Hosna Jabbari

25 papers C 6Misc 1Journal 14Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
CParty: hierarchically constrained partition function of RNA pseudoknots.
Bioinform.
Mateo Gray, Luke Trinity, Ulrike Stege, Yann Ponty, Sebastian Will, Hosna Jabbari
2025 C conf
Spark: Sparsified Hierarchical Energy Minimization of RNA Pseudoknots.
WABI
Mateo Gray, Sebastian Will, Hosna Jabbari
2024 J jnl
DinoKnot: Duplex Interaction of Nucleic Acids With PseudoKnots.
IEEE ACM Trans. Comput. Biol. Bioinform.
Tara Newman, Hiu Fung Kevin Chang, Hosna Jabbari
2024 J jnl
SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration.
Algorithms Mol. Biol.
Mateo Gray, Sebastian Will, Hosna Jabbari
2024 J jnl
Tying the knot: Unraveling the intricacies of the coronavirus frameshift pseudoknot.
PLoS Comput. Biol.
Luke Trinity, Ulrike Stege, Hosna Jabbari
2023 J jnl
Shapify: Paths to SARS-CoV-2 frameshifting pseudoknot.
PLoS Comput. Biol.
Luke Trinity, Ian Wark, Lance Lansing, Hosna Jabbari, Ulrike Stege
2023 C conf
SparseRNAFolD: Sparse RNA Pseudoknot-Free Folding Including Dangles.
WABI
Mateo Gray, Sebastian Will, Hosna Jabbari
2022 Misc conf
A QUBO model of the RNA folding problem optimized by variational hybrid quantum annealing.
QCE
Tristan Zaborniak, Juan Giraldo, Hausi A. Müller, Hosna Jabbari, Ulrike Stege
2022 J jnl
AI-powered aptamer generation.
Nat. Comput. Sci.
Majid Khabbazian, Hosna Jabbari
2022 J jnl
KnotAli: informed energy minimization through the use of evolutionary information.
BMC Bioinform.
Mateo Gray, Sean Chester, Hosna Jabbari
2022 J jnl
Supervised promoter recognition: a benchmark framework.
BMC Bioinform.
Raul I. Perez Martell, Alison Ziesel, Hosna Jabbari, Ulrike Stege
2021 — conf
Identification of conserved and evolving RNA secondary structures in SARS-CoV-2 and related viruses.
CASCON
Alison Ziesel, Hosna Jabbari
2021 — conf
In silico prediction of COVID-19 test efficiency with DinoKnot.
ICHI
Tara Newman, Hiu Fung Kevin Chang, Hosna Jabbari
2021 — conf
SARS-CoV-2 Ribosomal Frameshifting Pseudoknot: Detection of Inter-viral Structural Similarity.
ICHI
Luke Trinity, Lance Lansing, Hosna Jabbari, Ulrike Stege
2021 — conf
Viz23: web server for visualization of gene expression and locational information.
CASCON
Luke Trinity, Andrew Hollar, Haley Greenyer, Hosna Jabbari, Ulrike Stege
2018 J jnl
Knotty: efficient and accurate prediction of complex RNA pseudoknot structures.
Bioinform.
Hosna Jabbari, Ian Wark, Carlo Montemagno, Sebastian Will
2017 C conf
Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice.
WABI
Hosna Jabbari, Ian Wark, Carlo Montemagno, Sebastian Will
2016 J jnl
Sparse RNA folding revisited: space-efficient minimum free energy structure prediction.
Algorithms Mol. Biol.
Sebastian Will, Hosna Jabbari
2015 C conf
Sparse RNA Folding Revisited: Space-Efficient Minimum Free Energy Prediction.
WABI
Sebastian Will, Hosna Jabbari
2014 J jnl
A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures.
BMC Bioinform.
Hosna Jabbari, Anne Condon
2009 J jnl
An
J. Comput. Biol.
Ho-Lin Chen, Anne Condon, Hosna Jabbari
2009 J jnl
Computational prediction of nucleic acid secondary structure: Methods, applications, and challenges.
Theor. Comput. Sci.
Anne Condon, Hosna Jabbari
2008 J jnl
Novel and Efficient RNA Secondary Structure Prediction Using Hierarchical Folding.
J. Comput. Biol.
Hosna Jabbari, Anne Condon, Shelly Zhao
2007 C conf
A New Class of Cellular Automata.
DSD
Hosna Jabbari, Jon C. Muzio, Lin Sun
2007 C conf
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding.
WABI
Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop, Yinglei Zhao