Hongyu Zheng

11 papers B 2C 1Journal 8
YearRankTypeTitle / Venue / Authors
2023 J jnl
Creating and Using Minimizer Sketches in Computational Genomics.
J. Comput. Biol.
Hongyu Zheng, Guillaume Marçais, Carl Kingsford
2022 B conf
DeepMinimizer: A Differentiable Framework for Optimizing Sequence-Specific Minimizer Schemes.
RECOMB
Minh Hoang, Hongyu Zheng, Carl Kingsford
2022 J jnl
Deriving Ranges of Optimal Estimated Transcript Expression due to Nonidentifiability.
J. Comput. Biol.
Hongyu Zheng, Cong Ma, Carl Kingsford
2022 J jnl
Differentiable Learning of Sequence-Specific Minimizer Schemes with DeepMinimizer.
J. Comput. Biol.
Minh Hoang, Hongyu Zheng, Carl Kingsford
2021 J jnl
Exact transcript quantification over splice graphs.
Algorithms Mol. Biol.
Cong Ma, Hongyu Zheng, Carl Kingsford
2021 J jnl
Lower Density Selection Schemes via Small Universal Hitting Sets with Short Remaining Path Length.
J. Comput. Biol.
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
2021 J jnl
Sequence-specific minimizers via polar sets.
Bioinform.
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
2020 C conf
Exact Transcript Quantification Over Splice Graphs.
WABI
Cong Ma, Hongyu Zheng, Carl Kingsford
2020 J jnl
Improved design and analysis of practical minimizers.
Bioinform.
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
2020 B conf
Lower Density Selection Schemes via Small Universal Hitting Sets with Short Remaining Path Length.
RECOMB
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
2020 J jnl
Lower density selection schemes via small universal hitting sets with short remaining path length.
CoRR
Hongyu Zheng, Carl Kingsford, Guillaume Marçais