Hongwu Ma

20 papers Journal 18Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
GO-HKP: A Gene Ontology hierarchy-driven framework for enzyme k cat prediction.
Softw. Impacts
Qinghan Meng, Zhitao Mao, Hao Chen, Yuanyuan Huang, Hongwu Ma
2026 J jnl
RXNRECer Enables Fine-grained Enzymatic Function Annotation through Active Learning and Protein Language Models.
CoRR
Zhenkun Shi, Jun Zhu, Dehang Wang, Boyu Chen, Qianqian Yuan, Zhitao Mao, Fan Wei, Weining Wu, Xiaoping Liao, Hongwu Ma
2023 J jnl
CAVE: a cloud-based platform for analysis and visualization of metabolic pathways.
Nucleic Acids Res.
Zhitao Mao, Qianqian Yuan, Haoran Li, Yue Zhang, Yuanyuan Huang, Chunhe Yang, Ruoyu Wang, Yongfu Yang, Yalun Wu, Shihui Yang, Xiaoping Liao, Hongwu Ma
2022 J jnl
AutoESD: a web tool for automatic editing sequence design for genetic manipulation of microorganisms.
Nucleic Acids Res.
Yi Yang, Yufeng Mao, Ruoyu Wang, Haoran Li, Ye Liu, Haijiao Cheng, Zhenkun Shi, Yu Wang, Meng Wang, Ping Zheng, Xiaoping Liao, Hongwu Ma
2022 J jnl
ECRECer: Enzyme Commission Number Recommendation and Benchmarking based on Multiagent Dual-core Learning.
CoRR
Zhenkun Shi, Qianqian Yuan, Ruoyu Wang, Hoaran Li, Xiaoping Liao, Hongwu Ma
2022 J jnl
ERMer: a serverless platform for navigating, analyzing, and visualizing
Nucleic Acids Res.
Zhitao Mao, Ruoyu Wang, Haoran Li, Yixin Huang, Qiang Zhang, Xiaoping Liao, Hongwu Ma
2015 J jnl
Taxonomic and functional metagenomic analysis of anodic communities in two pilot-scale microbial fuel cells treating different industrial wastewaters.
J. Integr. Bioinform.
Larisa Kiseleva, Sofya K. Garushyants, Hongwu Ma, David J. W. Simpson, Viatcheslav Fedorovich, Michael F. Cohen, Igor Goryanin
2013 J jnl
A semi-automated genome annotation comparison and integration scheme.
BMC Bioinform.
Zhe Liu, Hongwu Ma, Igor Goryanin
2010 J jnl
Compartmentalization of the Edinburgh Human Metabolic Network.
BMC Bioinform.
Tong Hao, Hongwu Ma, Xue-Ming Zhao, Igor Goryanin
2009 — conf
BioDiVinE: A Framework for Parallel Analysis of Biological Models
COMPMOD
Jiri Barnat, Lubos Brim, Ivana Cerná, Sven Drazan, Jana Fabriková, Jan Láník, David Safránek, Hongwu Ma
2008 J jnl
Centrality, Network Capacity, and Modularity as Parameters to Analyze the Core-Periphery Structure in Metabolic Networks.
Proc. IEEE
Marcio Rosa da Silva, Hongwu Ma, An-Ping Zeng
2007 J jnl
Arsenic biosenseor: a step further.
BMC Syst. Biol.
Chris French, Judith Nicholson, Farid Bizzari, Jelena Aleksic, Yizhi Cai, Sreemati Seshasayee, Sergii Ivakhno, Bryony Davidson, Jen Wilson, Kim de Mora, Hongwu Ma, Laszlo Kozma-Bognar, Alistair Elfick
2007 J jnl
Metabolic network properties help assign weights to elementary modes to understand physiological flux distributions.
Bioinform.
Qingzhao Wang, Yudi Yang, Hongwu Ma, Xue-Ming Zhao
2007 J jnl
Modeling the arsenic biosensor system.
BMC Syst. Biol.
Yizhi Cai, Bryony Davidson, Hongwu Ma, Chris French
2006 J jnl
SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms.
BMC Bioinform.
Tim Van den Bulcke, Koen Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, Kathleen Marchal
2004 J jnl
Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph.
Bioinform.
Hongwu Ma, Xue-Ming Zhao, Ying-Jin Yuan, An-Ping Zeng
2004 J jnl
Hierarchical structure and modules in the
BMC Bioinform.
Hongwu Ma, Jan Buer, An-Ping Zeng
2003 J jnl
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms.
Bioinform.
Hongwu Ma, An-Ping Zeng
2003 J jnl
The Connectivity Structure, Giant Strong Component and Centrality of Metabolic Networks.
Bioinform.
Hongwu Ma, An-Ping Zeng
2001 — conf
Pathway Analysis of Bacillus subtillis Metabolic Network Based on Genomic Information.
German Conference on Bioinformatics
Hongwu Ma, Xiaofeng Guo, Xue-Ming Zhao