Hongwei Huo

49 papers A* 1A 1B 5C 5Misc 1Journal 25Unranked 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
RISK: Efficiently processing rich spatial-keyword queries on encrypted geo-textual data.
CoRR
Zhen Lv, Cong Cao, Hongwei Huo, Jiangtao Cui, Yanguo Peng, Hui Li, Yingfan Liu
2025 — conf
An Efficient Heuristic for Graph Edit Distance.
From Strings to Graphs, and Back Again
Xiaoyang Chen, Yujia Wang, Hongwei Huo, Jeffrey Scott Vitter
2025 — conf
FM-Adaptive: A Practical Data-Aware FM-Index.
The Expanding World of Compressed Data
Hongwei Huo, Zongtao He, Pengfei Liu, Jeffrey Scott Vitter
2025 A* conf
Indexing Labeled Property Multidigraphs in Entropy Space, with Applications.
ICDE
Hongwei Huo, Yongze Yu, Zongtao He, Jeffrey Scott Vitter
2025 J jnl
Panaln: indexing pangenome for read alignment.
Bioinform.
Lilu Guo, Zongtao He, Hongwei Huo
2025 J jnl
Quantization Range Estimation for Convolutional Neural Networks.
CoRR
Bingtao Yang, Yujia Wang, Mengzhi Jiao, Hongwei Huo
2025 B conf
RASKEE: A TEE-Assisted Secure Range Spatial Keyword Query in a Multi-user Setting.
TrustCom
Zhen Lv, Yaorong Tan, Hongwei Huo, Yanguo Peng, Youliang Tian
2024 J jnl
An efficient Burrows-Wheeler transform-based aligner for short read mapping.
Comput. Biol. Chem.
Lilu Guo, Hongwei Huo
2023 J jnl
Practical High-Order Entropy-Compressed Text Self-Indexing.
IEEE Trans. Knowl. Data Eng.
Hongwei Huo, Peng Long, Jeffrey Scott Vitter
2023 J jnl
RASK: Range Spatial Keyword Queries on Massive Encrypted Geo-Textual Data.
IEEE Trans. Serv. Comput.
Zhen Lv, Kaiyu Shang, Hongwei Huo, Ximeng Liu, Yanguo Peng, Xiangyu Wang, Yaorong Tan
2022 J jnl
CIndex: compressed indexes for fast retrieval of FASTQ files.
Bioinform.
Hongwei Huo, Pengfei Liu, Chenhui Wang, Hongbo Jiang, Jeffrey Scott Vitter
2022 J jnl
Optimal in-place suffix sorting.
Inf. Comput.
Zhize Li, Jian Li, Hongwei Huo
2021 J jnl
Efficient Compression and Indexing for Highly Repetitive DNA Sequence Collections.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hongwei Huo, Xiaoyang Chen, Xu Guo, Jeffrey Scott Vitter
2021 J jnl
MSQ-Index: A Succinct Index for Fast Graph Similarity Search.
IEEE Trans. Knowl. Data Eng.
Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter, Weiguo Zheng, Lei Zou
2020 J jnl
Feature reduction based on semantic similarity for graph classification.
Neurocomputing
Zhigang Sun, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter
2019 J jnl
A new algorithm for DNA motif discovery using multiple sample sequence sets.
J. Bioinform. Comput. Biol.
Qiang Yu, Xiang Zhao, Hongwei Huo
2019 J jnl
An efficient algorithm for graph edit distance computation.
Knowl. Based Syst.
Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter
2018 J jnl
Fast Top-K Graph Similarity Search Via Representative Matrices.
IEEE Access
Zhigang Sun, Hongwei Huo, Xiaoyang Chen
2018 B conf
Optimal In-Place Suffix Sorting.
DCC
Zhize Li, Jian Li, Hongwei Huo
2018 C conf
Optimal In-Place Suffix Sorting.
SPIRE
Zhize Li, Jian Li, Hongwei Huo
2018 B conf
Practical Succinct Text Indexes in External Memory.
DCC
Hongwei Huo, Xiaoyang Chen, Yuhao Zhao, Xiaojin Zhu, Jeffrey Scott Vitter
2018 J jnl
SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets.
BMC Bioinform.
Qiang Yu, Dingbang Wei, Hongwei Huo
2017 J jnl
Efficient Graph Similarity Search in External Memory.
IEEE Access
Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter
2017 J jnl
Fast Computation of Graph Edit Distance.
CoRR
Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter
2016 B conf
CS2A: A Compressed Suffix Array-Based Method for Short Read Alignment.
DCC
Hongwei Huo, Zhigang Sun, Shuangjiang Li, Jeffrey Scott Vitter, Xinkun Wang, Qiang Yu, Jun Huan
2016 J jnl
MSQ-Index: A Succinct Index for Fast Graph Similarity Search.
CoRR
Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter
2016 J jnl
Optimal In-Place Suffix Sorting.
CoRR
Zhize Li, Jian Li, Hongwei Huo
2016 J jnl
RefSelect: a reference sequence selection algorithm for planted (
BMC Bioinform.
Qiang Yu, Hongwei Huo, Ruixing Zhao, Dazheng Feng, Jeffrey Scott Vitter, Jun Huan
2015 A conf
A Data-Aware FM-index.
ALENEX
Hongwei Huo, Longgang Chen, Heng Zhao, Jeffrey Scott Vitter, Yakov Nekrich, Qiang Yu
2015 J jnl
An Efficient Exact Algorithm for the Motif Stem Search Problem over Large Alphabets.
IEEE ACM Trans. Comput. Biol. Bioinform.
Qiang Yu, Hongwei Huo, Jeffrey Scott Vitter, Jun Huan, Yakov Nekrich
2015 — conf
Reference sequence selection for motif searches.
BIBM
Qiang Yu, Hongwei Huo, Ruixing Zhao, Dazheng Feng, Jeffrey Scott Vitter, Jun Huan
2014 B conf
A Practical Implementation of Compressed Suffix Arrays with Applications to Self-Indexing.
DCC
Hongwei Huo, Longgang Chen, Jeffrey Scott Vitter, Yakov Nekrich
2014 — conf
An efficient motif finding algorithm for large DNA data sets.
BIBM
Qiang Yu, Hongwei Huo, Xiaoyang Chen, Haitao Guo, Jeffrey Scott Vitter, Jun Huan
2013 J jnl
A Heuristic Cluster-Based EM Algorithm for the Planted (L, d) Problem.
J. Bioinform. Comput. Biol.
Yipu Zhang, Hongwei Huo, Qiang Yu
2013 — conf
StemFinder: An efficient algorithm for searching motif stems over large alphabets.
BIBM
Qiang Yu, Hongwei Huo, Jeffrey Scott Vitter, Jun Huan, Yakov Nekrich
2012 — conf
A MapReduce-based Algorithm for Motif Search.
IPDPS Workshops
Hongwei Huo, Shuai Lin, Qiang Yu, Yipu Zhang, Vojislav Stojkovic
2010 J jnl
A Quantum-Inspired Genetic Algorithm Based on Probabilistic Coding for Multiple Sequence Alignment.
J. Bioinform. Comput. Biol.
Hongwei Huo, Vojislav Stojkovic, Qiao-Luan Xie
2010 J jnl
Optimizing genetic algorithm for motif discovery.
Math. Comput. Model.
Hongwei Huo, Zhenhua Zhao, Vojislav Stojkovic, Lifang Liu
2009 — conf
An Adaptive Suffix Tree Based Algorithm for Repeats Recognition in a DNA Sequence.
IJCBS
Hongwei Huo, Xiaowu Wang, Vojislav Stojkovic
2009 J jnl
Repeats identification using improved suffix trees.
Int. J. Comput. Biol. Drug Des.
Hongwei Huo, Xiaowu Wang, Vojislav Stojkovic
2008 — conf
A Greedy Two-stage Gibbs Sampling Method for Motif Discovery in Biological Sequences.
BMEI (1)
Lifang Liu, Licheng Jiao, Hongwei Huo
2007 C conf
A Suffix Tree Construction Algorithm for DNA Sequences.
BIBE
Hongwei Huo, Vojislav Stojkovic
2007 — conf
A simulated annealing algorithm for multiple sequence alignment with guaranteed accuracy.
ICNC (2)
Hongwei Huo, Vojislav Stojkovic
2006 — conf
A Maximum Weighted Path Approach to Multiple Alignments for DNA Sequences.
ICNC (2)
Hongwei Huo, Vojislav Stojkovic, Zhiwei Xiao
2006 C conf
Software Agents Action Securities.
CIS
Vojislav Stojkovic, Hongwei Huo
2006 C conf
Two-Phase Quantum Based Evolutionary Algorithm for Multiple Sequence Alignment.
CIS
Hongwei Huo, Vojislav Stojkovic
2005 Misc conf
A Novel Optimization of Profile HMM by a Hybrid Genetic Algorithm.
IWANN
Lifang Liu, Hongwei Huo, Bao-Shu Wang
2005 C conf
HGA-COFFEE : Aligning Multiple Sequences by Hybrid Genetic Algorithm.
ADMA
Lifang Liu, Hongwei Huo, Bao-Shu Wang
2005 — conf
Simulated Annealing with Injecting Star-Alignment for Multiple Sequence Alignments.
CIS (1)
Hongwei Huo, Hua Ming