Hongliang Duan

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2026 J jnl
RA2M-UNet: Efficient medical image segmentation via reparameterized convolution, dual-domain attention and 2D state-space modeling.
Biomed. Signal Process. Control.
Chao Zhang, Lei Yang, Sai Zhang, Hongliang Duan, Jingjing Guo
2025 J jnl
Accurate structure prediction of cyclic peptides containing unnatural amino acids using HighFold3.
Briefings Bioinform.
Sen Cao, Cheng Zhu, Qingyi Mao, Jingjing Guo, Ning Zhu, Hongliang Duan
2025 J jnl
AlphaFold3 for Noncanonical Cyclic Peptide Modeling: Hierarchical Benchmarking Reveals Accuracy and Practical Guidelines.
J. Chem. Inf. Model.
Chengyun Zhang, Wentong Wang, Ning Zhu, Zhigang Cao, Yaling Wu, Qingyi Mao, Cheng Zhu, Chenhao Zhang, Jingjing Guo, Hongliang Duan
2025 J jnl
BridgeNet: a high-efficiency framework integrating sequence and structure for protein and enzyme function prediction.
Briefings Bioinform.
Yilin Ye, Hongliang Duan, Yuguang Mu, Lei Wu, Jingjing Guo
2025 J jnl
CycleDesigner: Leveraging CycRFdiffusion and HighFold to Design Cyclic Peptide Binders for Specific Targets.
J. Chem. Inf. Model.
Chenhao Zhang, Zhenyu Xu, Kang Lin, Ning Zhu, Chengyun Zhang, Wen Xu, Jingjing Guo, An Su, Chengxi Li, Hongliang Duan
2025 J jnl
HighFold-MeD: a Rosetta distillation model to accelerate structure prediction of cyclic peptides with backbone N-methylation and d-amino acids.
J. Cheminformatics
Zhigang Cao, Sen Cao, Linghong Wang, Zhiguo Wang, Qingyi Mao, Jingjing Guo, Hongliang Duan
2025 J jnl
Predicting the structures of cyclic peptides containing unnatural amino acids by HighFold2.
Briefings Bioinform.
Cheng Zhu, Sen Cao, Tianfeng Shang, Jingjing Guo, An Su, Chengxi Li, Hongliang Duan
2024 J jnl
GAPS: a geometric attention-based network for peptide binding site identification by the transfer learning approach.
Briefings Bioinform.
Cheng Zhu, Chengyun Zhang, Tianfeng Shang, Chenhao Zhang, Silong Zhai, Lujing Cao, Zhenyu Xu, Zhihao Su, Ying Song, An Su, Chengxi Li, Hongliang Duan
2024 J jnl
HighFold: accurately predicting structures of cyclic peptides and complexes with head-to-tail and disulfide bridge constraints.
Briefings Bioinform.
Chenhao Zhang, Chengyun Zhang, Tianfeng Shang, Ning Zhu, Xinyi Wu, Hongliang Duan
2024 J jnl
NanoCon: contrastive learning-based deep hybrid network for nanopore methylation detection.
Bioinform.
Chenglin Yin, Ruheng Wang, Jianbo Qiao, Hua Shi, Hongliang Duan, Xinbo Jiang, Saisai Teng, Leyi Wei
2024 J jnl
Transfer learning across different chemical domains: virtual screening of organic materials with deep learning models pretrained on small molecule and chemical reaction data.
J. Cheminformatics
Chengwei Zhang, Yushuang Zhai, Ziyang Gong, Hongliang Duan, Yuan-Bin She, Yun-Fang Yang, An Su
2023 J jnl
Efficient Computational Framework for Target-Specific Active Peptide Discovery: A Case Study on IL-17C Targeting Cyclic Peptides.
J. Chem. Inf. Model.
Zhipeng Wu, Yejian Wu, Cheng Zhu, Xinyi Wu, Silong Zhai, Xinqiao Wang, Zhihao Su, Hongliang Duan
2022 J jnl
From theory to experiment: transformer-based generation enables rapid discovery of novel reactions.
J. Cheminformatics
Xinqiao Wang, Chuansheng Yao, Yun Zhang, Jiahui Yu, Haoran Qiao, Chengyun Zhang, Yejian Wu, Renren Bai, Hongliang Duan
2022 J jnl
Self-Supervised Molecular Pretraining Strategy for Low-Resource Reaction Prediction Scenarios.
J. Chem. Inf. Model.
Zhipeng Wu, Xiang Cai, Chengyun Zhang, Haoran Qiao, Yejian Wu, Yun Zhang, Xinqiao Wang, Haiying Xie, Feng Luo, Hongliang Duan
2021 J jnl
Outage Performance of Full-Duplex Relay Networks Powered by RF Power Station in Ubiquitous Electric Internet of Things.
Wirel. Commun. Mob. Comput.
Yu Zhang, Xiaofei Di, Hongliang Duan, Xi Yang, Peng Wu, Baoguo Shan
2019 J jnl
Retrosynthesis with Attention-Based NMT Model and Chemical Analysis of the "Wrong" Predictions.
CoRR
Hongliang Duan, Ling Wang, Chengyun Zhang, Jianjun Li