Hongkai Ji

15 papers Journal 14
YearRankTypeTitle / Venue / Authors
2022 J jnl
EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing.
Bioinform.
Xin Wei, Ziyi Li, Hongkai Ji, Hao Wu
2021 J jnl
Profiling Chromatin Accessibility at Single-cell Resolution.
Genom. Proteom. Bioinform.
Sarthak Sinha, Ansuman T. Satpathy, Weiqiang Zhou, Hongkai Ji, Jo A. Stratton, Arzina Jaffer, Nizar Bahlis, Sorana Morrissy, Jeff A. Biernaskie
2017 J jnl
Single-cell regulome data analysis by SCRAT.
Bioinform.
Zhicheng Ji, Weiqiang Zhou, Hongkai Ji
2016 J jnl
Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes.
PLoS Comput. Biol.
Jie Wang, Shuli Xia, Brian Arand, Heng Zhu, Raghu Machiraju, Kun Huang, Hongkai Ji, Jiang Qian
2013 J jnl
ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data.
Bioinform.
George Wu, Jason T. Yustein, Matthew N. McCall, Michael J. Zilliox, Rafael A. Irizarry, Karen Zeller, Chi V. Dang, Hongkai Ji
2013 J jnl
ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking.
BMC Bioinform.
George Wu, Hongkai Ji
2013 J jnl
Gene set bagging for estimating the probability a statistically significant result will replicate.
BMC Bioinform.
Andrew E. Jaffe, John D. Storey, Hongkai Ji, Jeffrey T. Leek
2012 J jnl
iASeq: integrating multiple chip-seq datasets for detecting allele-specific binding.
BMC Bioinform.
Yingying Wei, Xia Li, Qianfei Wang, Hongkai Ji
2011 — ch.
Computational Analysis of ChIP-chip Data.
Handbook of Statistical Bioinformatics
Hongkai Ji
2011 J jnl
hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.
Bioinform.
Li Chen, George Wu, Hongkai Ji
2010 J jnl
JAMIE: joint analysis of multiple ChIP-chip experiments.
Bioinform.
Hao Wu, Hongkai Ji
2009 J jnl
TileProbe: modeling tiling array probe effects using publicly available data.
Bioinform.
Jennifer Toolan Judy, Hongkai Ji
2006 J jnl
An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse.
BMC Bioinform.
Ryung S. Kim, Hongkai Ji, Wing Hung Wong
2005 J jnl
TileMap: create chromosomal map of tiling array hybridizations.
Bioinform.
Hongkai Ji, Wing Hung Wong
2001 J jnl
AsMamDB: an alternative splice database of mammals.
Nucleic Acids Res.
Hongkai Ji, Qing Zhou, Fang Wen, Huiyu Xia, Xin Lu, Yanda Li