Hongde Liu

14 papers Journal 10Unranked 4
YearRankTypeTitle / Venue / Authors
2023 J jnl
scAnno: a deconvolution strategy-based automatic cell type annotation tool for single-cell RNA-sequencing data sets.
Briefings Bioinform.
Hongjia Liu, Huamei Li, Amit Sharma, Wenjuan Huang, Duo Pan, Yu Gu, Lu Lin, Xiao Sun, Hongde Liu
2022 J jnl
Predicting hormone receptors and PAM50 subtypes of breast cancer from multi-scale lesion images of DCE-MRI with transfer learning technique.
Comput. Biol. Medicine
Wenlong Ming, Fuyu Li, Yanhui Zhu, Yunfei Bai, Wanjun Gu, Yun Liu, Xiao Sun, Xiaoan Liu, Hongde Liu
2021 J jnl
DeepSSV: detecting somatic small variants in paired tumor and normal sequencing data with convolutional neural network.
Briefings Bioinform.
Jing Meng, Brandon Victor, Zhen He, Hongde Liu, Taijiao Jiang
2019 J jnl
DNMHMM: An approach to identify the differential nucleosome regions in multiple cell types based on a Hidden Markov Model.
Biosyst.
Jiahao Xie, Yiran Cai, Huamei Li, Jiahui Wu, Xinlei Zhao, Kun Luo, Amit Sharma, Jianming Xie, Xiao Sun, Hongde Liu
2018 J jnl
Nucleosome Positioning of Intronless Genes in the Human Genome.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiangfei Cheng, Yue Hou, Yumin Nie, Yiru Zhang, Huan Huang, Hongde Liu, Xiao Sun
2017 J jnl
Histone modifications influence skipped exons inclusion.
J. Bioinform. Comput. Biol.
Yue Hou, Huan Huang, Wenqiao Hu, Hongde Liu, Xiao Sun
2012 — conf
Next-generation sequencing data processing: Analysis of unmapped reads and extremely high mapped peaks.
BMEI
Jiao Chen, Zuolei Dai, Chang-Chang Cao, Qianqian Zhang, Hongde Liu, Xiao Sun
2012 J jnl
Nucleosome organization in sequences of alternative events in human genome.
Biosyst.
Huan Huang, Shuangxin Yu, Hongde Liu, Xiao Sun
2012 J jnl
Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xin Ma, Jing Guo, Hongde Liu, Jianming Xie, Xiao Sun
2011 J jnl
Role of 10-11 bp periodicities of eukaryotic DNA sequence in nucleosome positioning.
Biosyst.
Hongde Liu, Shuhai Lin, Zongwei Cai, Xiao Sun
2010 — conf
Nucleosomes Are Well Positioned at Both Ends of Exons.
LSMS/ICSEE
Hongde Liu, Xiao Sun
2009 J jnl
Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature.
Bioinform.
Jiansheng Wu, Hongde Liu, Xueye Duan, Yan Ding, Hongtao Wu, Yunfei Bai, Xiao Sun
2009 — conf
SVM-Based Approach for Predicting DNA-Binding Residues in Proteins from Amino Acid Sequences.
IJCBS
Xin Ma, Jiansheng Wu, Hongde Liu, Xinan Yang, Jianming Xie, Xiao Sun
2007 — conf
Support Vector Machine for Prediction of DNA-Binding Domains in Protein-DNA Complexes.
LSMS (2)
Jiansheng Wu, Hongtao Wu, Hongde Liu, Haoyan Zhou, Xiao Sun