Hong Yu - RankMe

228 papers A* 18A 1B 3Misc 26Journal 122Unranked 57

Year	Rank	Type	Title / Venue / Authors
2026	A*	`conf`	ChatCLIDS: Simulating Persuasive AI Dialogues to Promote Closed-Loop Insulin Adoption in Type 1 Diabetes Care. AAAI Zonghai Yao, Talha Chafekar, Junda Wang, Shuo Han, Feiyun Ouyang, Junhui Qian, Lingxi Li, Hong Yu
2026	—	`conf`	Knowing When to Abstain: Medical LLMs Under Clinical Uncertainty. EACL (Volume 1: Long Papers) Sravanthi Machcha, Sushrita Yerra, Sahil Gupta, Aishwarya Sahoo, Sharmin Sultana, Hong Yu, Zonghai Yao
2026	J	`jnl`	Knowing When to Abstain: Medical LLMs Under Clinical Uncertainty. CoRR Sravanthi Machcha, Sushrita Yerra, Sahil Gupta, Aishwarya Sahoo, Sharmin Sultana, Hong Yu, Zonghai Yao
2026	—	`conf`	MedQA-CS: Objective Structured Clinical Examination (OSCE)-Style Benchmark for Evaluating LLM Clinical Skills. EACL (Volume 1: Long Papers) Zonghai Yao, Zihao Zhang, Chaolong Tang, Xingyu Bian, Youxia Zhao, Zhichao Yang, Junda Wang, Huixue Zhou, Won Seok Jang, Feiyun Ouyang, Hong Yu
2026	A*	`conf`	PRIME: Planning and Retrieval-Integrated Memory for Enhanced Reasoning. AAAI Hieu Tran, Zonghai Yao, Nguyen Luong Tran, Zhichao Yang, Feiyun Ouyang, Shuo Han, Razieh Rahimi, Hong Yu
2026	J	`jnl`	TARSE: Test-Time Adaptation via Retrieval of Skills and Experience for Reasoning Agents. CoRR Junda Wang, Zonghai Tao, Hansi Zeng, Zhichao Yang, Hamed Zamani, Hong Yu
2025	J	`jnl`	CARE-AD: a multi-agent large language model framework for Alzheimer's disease prediction using longitudinal clinical notes. npj Digit. Medicine Rumeng Li, Xun Wang, Dan Berlowitz, Jesse Mez, Honghuang Lin, Hong Yu
2025	J	`jnl`	ChatCLIDS: Simulating Persuasive AI Dialogues to Promote Closed-Loop Insulin Adoption in Type 1 Diabetes Care. CoRR Zonghai Yao, Talha Chafekar, Junda Wang, Shuo Han, Feiyun Ouyang, Junhui Qian, Lingxi Li, Hong Yu
2025	J	`jnl`	ChatThero: An LLM-Supported Chatbot for Behavior Change and Therapeutic Support in Addiction Recovery. CoRR Junda Wang, Zonghai Yao, Zhichao Yang, Lingxi Li, Junhui Qian, Hong Yu
2025	—	`conf`	Chatbot To Help Patients Understand Their Health. EMNLP (Findings) Won Seok Jang, Hieu Tran, Manav Mistry, SaiKiran Gandluri, Yifan Zhang, Sharmin Sultana, Sunjae Kwon, Yuan Zhang, Zonghai Yao, Hong Yu
2025	J	`jnl`	Chatbot To Help Patients Understand Their Health. CoRR Won Seok Jang, Hieu Tran, Manav Mistry, SaiKiran Gandluri, Yifan Zhang, Sharmin Sultana, Sunjae Kown, Yuan Zhang, Zonghai Yao, Hong Yu
2025	A*	`conf`	DischargeSim: A Simulation Benchmark for Educational Doctor-Patient Communication at Discharge. EMNLP Zonghai Yao, Michael Sun, Won Seok Jang, Sunjae Kwon, Soie Kwon, Hong Yu
2025	J	`jnl`	DischargeSim: A Simulation Benchmark for Educational Doctor-Patient Communication at Discharge. CoRR Zonghai Yao, Michael Sun, Won Seok Jang, Sunjae Kwon, Soie Kwon, Hong Yu
2025	J	`jnl`	Enhancing LLMs for Identifying and Prioritizing Important Medical Jargons from Electronic Health Record Notes Utilizing Data Augmentation. CoRR Won Seok Jang, Sharmin Sultana, Zonghai Yao, Hieu Tran, Zhichao Yang, Sunjae Kwon, Hong Yu
2025	—	`conf`	Enhancing Multilingual Medical Summarization via Contextual Keyword Augmentation. CLEF (Working Notes) Md. Shahidul Salim, Lianne Fu, Arav Adikesh Ramakrishnan, Sunjae Kwon, Zonghai Yao, Hong Yu
2025	J	`jnl`	Exploiting Tree Structure for Credit Assignment in RL Training of LLMs. CoRR Hieu Tran, Zonghai Yao, Hong Yu
2025	A*	`conf`	From Scores to Steps: Diagnosing and Improving LLM Performance in Evidence-Based Medical Calculations. EMNLP Benlu Wang, Iris Xia, Yifan Zhang, Junda Wang, Feiyun Ouyang, Shuo Han, Arman Cohan, Hong Yu, Zonghai Yao
2025	J	`jnl`	From Scores to Steps: Diagnosing and Improving LLM Performance in Evidence-Based Medical Calculations. CoRR Benlu Wang, Iris Xia, Yifan Zhang, Junda Wang, Feiyun Ouyang, Shuo Han, Arman Cohan, Hong Yu, Zonghai Yao
2025	A	`conf`	Improving Rare and Common ICD Coding via a Multi-Agent LLM-Based Approach. CIKM Rumeng Li, Xun Wang, Hong Yu
2025	—	`conf`	LEAF: Learning and Evaluation Augmented by Fact-Checking to Improve Factualness in Large Language Models. EMNLP (Industry Track) Hieu Tran, Junda Wang, Yujan Ting, Hong Yu, Weijing Huang, Terrence Chen
2025	—	`conf`	MCQG-SRefine: Multiple Choice Question Generation and Evaluation with Iterative Self-Critique, Correction, and Comparison Feedback. NAACL (Long Papers) Zonghai Yao, Aditya Parashar, Huixue Zhou, Won Seok Jang, Feiyun Ouyang, Zhichao Yang, Hong Yu
2025	—	`conf`	MedCOD: Enhancing English-to-Spanish Medical Translation of Large Language Models Using Enriched Chain-of-Dictionary Framework. EMNLP (Findings) Md. Shahidul Salim, Lian Fu, Arav Adikesh Ramakrishnan, Zonghai Yao, Hong Yu
2025	J	`jnl`	MedCOD: Enhancing English-to-Spanish Medical Translation of Large Language Models Using Enriched Chain-of-Dictionary Framework. CoRR Md. Shahidul Salim, Lian Fu, Arav Adikesh Ramakrishnan, Zonghai Yao, Hong Yu
2025	J	`jnl`	MedReadCtrl: Personalizing medical text generation with readability-controlled instruction learning. CoRR Hieu Tran, Zonghai Yao, Won Seok Jang, Sharmin Sultana, Allen Chang, Yuan Zhang, Hong Yu
2025	J	`jnl`	PRIME: Planning and Retrieval-Integrated Memory for Enhanced Reasoning. CoRR Hieu Tran, Zonghai Yao, Nguyen Luong Tran, Zhichao Yang, Feiyun Ouyang, Shuo Han, Razieh Rahimi, Hong Yu
2025	J	`jnl`	RADAR: Benchmarking Language Models on Imperfect Tabular Data. CoRR Ken Gu, Zhihan Zhang, Kate Lin, Yuwei Zhang, Akshay Paruchuri, Hong Yu, Mehran Kazemi, Kumar Ayush, A. Ali Heydari, Maxwell A. Xu, Girish Narayanswamy, Yun Liu, Ming-Zher Poh, Yuzhe Yang, Mark Malhotra, Shwetak N. Patel, Hamid Palangi, Xuhai Xu, Daniel McDuff, Tim Althoff, Xin Liu
2025	—	`conf`	RARE: Retrieval-Augmented Reasoning Enhancement for Large Language Models. ACL (1) Hieu Tran, Zonghai Yao, Zhichao Yang, Junda Wang, Yifan Zhang, Shuo Han, Feiyun Ouyang, Hong Yu
2025	A*	`conf`	Synth-SBDH: A Synthetic Dataset of Social and Behavioral Determinants of Health for Clinical Text. EMNLP Avijit Mitra, Zhichao Yang, Emily Druhl, Raelene Goodwin, Hong Yu
2025	J	`jnl`	SynthEHR-Eviction: Enhancing Eviction SDoH Detection with LLM-Augmented Synthetic EHR Data. CoRR Zonghai Yao, Youxia Zhao, Avijit Mitra, David A. Levy, Emily Druhl, Jack Tsai, Hong Yu
2025	J	`jnl`	The Anatomy of a Personal Health Agent. CoRR A. Ali Heydari, Ken Gu, Vidya Srinivas, Hong Yu, Zhihan Zhang, Yuwei Zhang, Akshay Paruchuri, Qian He, Hamid Palangi, Nova Hammerquist, Ahmed A. Metwally, Brent Winslow, Yubin Kim, Kumar Ayush, Yuzhe Yang, Girish Narayanswamy, Maxwell A. Xu, Jake Garrison, Amy A. Lee, Jenny Vafeiadou, Benjamin Graef, Isaac R. Galatzer-Levy, Erik Schenck, Andrew Barakat, Javier Perez Matos, Jacqueline Shreibati, John Hernandez, Anthony Z. Faranesh, Javier L. Prieto, Conor Heneghan, Yun Liu, Jiening Zhan, Mark Malhotra, Shwetak N. Patel, Tim Althoff, Xin Liu, Daniel McDuff, Xuhai Xu
2024	J	`jnl`	A Psychology-based Unified Dynamic Framework for Curriculum Learning. CoRR Guangyu Meng, Qingkai Zeng, John P. Lalor, Hong Yu
2024	J	`jnl`	BioInstruct: instruction tuning of large language models for biomedical natural language processing. J. Am. Medical Informatics Assoc. Hieu Tran, Zhichao Yang, Zonghai Yao, Hong Yu
2024	J	`jnl`	Blocks Architecture (BloArk): Efficient, Cost-Effective, and Incremental Dataset Architecture for Wikipedia Revision History. CoRR Lingxi Li, Zonghai Yao, Sunjae Kwon, Hong Yu
2024	—	`conf`	ClinicalMamba: A Generative Clinical Language Model on Longitudinal Clinical Notes. ClinicalNLP@NAACL Zhichao Yang, Avijit Mitra, Sunjae Kwon, Hong Yu
2024	J	`jnl`	ClinicalMamba: A Generative Clinical Language Model on Longitudinal Clinical Notes. CoRR Zhichao Yang, Avijit Mitra, Sunjae Kwon, Hong Yu
2024	J	`jnl`	Data Extraction Attacks in Retrieval-Augmented Generation via Backdoors. CoRR Yuefeng Peng, Junda Wang, Hong Yu, Amir Houmansadr
2024	—	`conf`	Do Clinicians Know How to Prompt? The Need for Automatic Prompt Optimization Help in Clinical Note Generation. BioNLP@ACL Zonghai Yao, Ahmed Jaafar, Beining Wang, Zhichao Yang, Hong Yu
2024	J	`jnl`	Exploring Interdisciplinary Team Collaboration in Clinical NLP Projects Through the Lens of Activity Theory. CoRR Bingsheng Yao, Yao Du, Yue Fu, Xuhai Xu, Yanjun Gao, Hong Yu, Dakuo Wang
2024	J	`jnl`	Exploring LLM Multi-Agents for ICD Coding. CoRR Rumeng Li, Xun Wang, Hong Yu
2024	J	`jnl`	JMLR: Joint Medical LLM and Retrieval Training for Enhancing Reasoning and Professional Question Answering Capability. CoRR Junda Wang, Zhichao Yang, Zonghai Yao, Hong Yu
2024	J	`jnl`	Large Language Model-based Role-Playing for Personalized Medical Jargon Extraction. CoRR Jung Hoon Lim, Sunjae Kwon, Zonghai Yao, John P. Lalor, Hong Yu
2024	—	`conf`	Large Language Models are In-context Teachers for Knowledge Reasoning. EMNLP (Findings) Jiachen Zhao, Zonghai Yao, Zhichao Yang, Hong Yu
2024	—	`conf`	LlamaCare: An Instruction Fine-Tuned Large Language Model for Clinical NLP. LREC/COLING Rumeng Li, Xun Wang, Hong Yu
2024	—	`conf`	LocalTweets to LocalHealth: A Mental Health Surveillance Framework Based on Twitter Data. LREC/COLING Vijeta Deshpande, Minhwa Lee, Zonghai Yao, Zihao Zhang, Jason Brian Gibbons, Hong Yu
2024	J	`jnl`	LocalTweets to LocalHealth: A Mental Health Surveillance Framework Based on Twitter Data. CoRR Vijeta Deshpande, Minhwa Lee, Zonghai Yao, Zihao Zhang, Jason Brian Gibbons, Hong Yu
2024	J	`jnl`	MCQG-SRefine: Multiple Choice Question Generation and Evaluation with Iterative Self-Critique, Correction, and Comparison Feedback. CoRR Zonghai Yao, Aditya Parashar, Huixue Zhou, Won Seok Jang, Feiyun Ouyang, Zhichao Yang, Hong Yu
2024	J	`jnl`	MedQA-CS: Benchmarking Large Language Models Clinical Skills Using an AI-SCE Framework. CoRR Zonghai Yao, Zihao Zhang, Chaolong Tang, Xingyu Bian, Youxia Zhao, Zhichao Yang, Junda Wang, Huixue Zhou, Won Seok Jang, Feiyun Ouyang, Hong Yu
2024	J	`jnl`	Mental-LLM: Leveraging Large Language Models for Mental Health Prediction via Online Text Data. Proc. ACM Interact. Mob. Wearable Ubiquitous Technol. Xuhai Xu, Bingsheng Yao, Yuanzhe Dong, Saadia Gabriel, Hong Yu, James A. Hendler, Marzyeh Ghassemi, Anind K. Dey, Dakuo Wang
2024	—	`conf`	NoteChat: A Dataset of Synthetic Patient-Physician Conversations Conditioned on Clinical Notes. ACL (Findings) Junda Wang, Zonghai Yao, Zhichao Yang, Huixue Zhou, Rumeng Li, Xun Wang, Yucheng Xu, Hong Yu
2024	—	`conf`	ODD: A Benchmark Dataset for the Natural Language Processing Based Opioid Related Aberrant Behavior Detection. NAACL-HLT Sunjae Kwon, Xun Wang, Weisong Liu, Emily Druhl, Minhee L. Sung, Joel I. Reisman, Wenjun Li, Robert D. Kerns, William Becker, Hong Yu
2024	J	`jnl`	RARE: Retrieval-Augmented Reasoning Enhancement for Large Language Models. CoRR Hieu Tran, Zonghai Yao, Junda Wang, Yifan Zhang, Zhichao Yang, Hong Yu
2024	—	`conf`	README: Bridging Medical Jargon and Lay Understanding for Patient Education through Data-Centric NLP. EMNLP (Findings) Zonghai Yao, Nandyala Siddharth Kantu, Guanghao Wei, Hieu Tran, Zhangqi Duan, Sunjae Kwon, Zhichao Yang, README annotation team, Hong Yu
2024	J	`jnl`	ReadCtrl: Personalizing text generation with readability-controlled instruction learning. CoRR Hieu Tran, Zonghai Yao, Lingxi Li, Hong Yu
2024	J	`jnl`	RiTeK: A Dataset for Large Language Models Complex Reasoning over Textual Knowledge Graphs. CoRR Jiatan Huang, Mingchen Li, Zonghai Yao, Zhichao Yang, Yongkang Xiao, Feiyun Ouyang, Xiaohan Li, Shuo Han, Hong Yu
2024	A*	`conf`	SYNFAC-EDIT: Synthetic Imitation Edit Feedback for Factual Alignment in Clinical Summarization. EMNLP Prakamya Mishra, Zonghai Yao, Parth Vashisht, Feiyun Ouyang, Beining Wang, Vidhi Dhaval Mody, Hong Yu
2024	J	`jnl`	SYNFAC-EDIT: Synthetic Imitation Edit Feedback for Factual Alignment in Clinical Summarization. CoRR Prakamya Mishra, Zonghai Yao, Parth Vashisht, Feiyun Ouyang, Beining Wang, Vidhi Dhaval Mody, Hong Yu
2024	J	`jnl`	SemiHVision: Enhancing Medical Multimodal Models with a Semi-Human Annotated Dataset and Fine-Tuned Instruction Generation. CoRR Junda Wang, Yujan Ting, Eric Z. Chen, Hieu Tran, Hong Yu, Weijing Huang, Terrence Chen
2024	J	`jnl`	Synth-SBDH: A Synthetic Dataset of Social and Behavioral Determinants of Health for Clinical Text. CoRR Avijit Mitra, Emily Druhl, Raelene Goodwin, Hong Yu
2024	J	`jnl`	Two Directions for Clinical Data Generation with Large Language Models: Data-to-Label and Label-to-Data. CoRR Rumeng Li, Xun Wang, Hong Yu
2024	—	`conf`	UMass-BioNLP at MEDIQA-M3G 2024: DermPrompt - A Systematic Exploration of Prompt Engineering with GPT-4V for Dermatological Diagnosis. ClinicalNLP@NAACL Parth Vashisht, Abhilasha Lodha, Mukta Maddipatla, Zonghai Yao, Avijit Mitra, Zhichao Yang, Sunjae Kwon, Junda Wang, Hong Yu
2024	J	`jnl`	UMass-BioNLP at MEDIQA-M3G 2024: DermPrompt - A Systematic Exploration of Prompt Engineering with GPT-4V for Dermatological Diagnosis. CoRR Parth Vashisht, Abhilasha Lodha, Mukta Maddipatla, Zonghai Yao, Avijit Mitra, Zhichao Yang, Junda Wang, Sunjae Kwon, Hong Yu
2023	J	`jnl`	Automated identification of eviction status from electronic health record notes. J. Am. Medical Informatics Assoc. Zonghai Yao, Jack Tsai, Weisong Liu, David A. Levy, Emily Druhl, Joel I. Reisman, Hong Yu
2023	J	`jnl`	BioInstruct: Instruction Tuning of Large Language Models for Biomedical Natural Language Processing. CoRR Hieu Tran, Zhichao Yang, Zonghai Yao, Hong Yu
2023	J	`jnl`	Do Physicians Know How to Prompt? The Need for Automatic Prompt Optimization Help in Clinical Note Generation. CoRR Zonghai Yao, Ahmed Jaafar, Beining Wang, Yue Zhu, Zhichao Yang, Hong Yu
2023	J	`jnl`	EHR Interaction Between Patients and AI: NoteAid EHR Interaction. CoRR Xiaocheng Zhang, Zonghai Yao, Hong Yu
2023	J	`jnl`	EHRTutor: Enhancing Patient Understanding of Discharge Instructions. CoRR Zihao Zhang, Zonghai Yao, Huixue Zhou, Feiyun Ouyang, Hong Yu
2023	J	`jnl`	Early Prediction of Alzheimers Disease Leveraging Symptom Occurrences from Longitudinal Electronic Health Records of US Military Veterans. CoRR Rumeng Li, Xun Wang, Dan Berlowitz, Brian Silver, Wen Hu, Heather Keating, Raelene Goodwin, Weisong Liu, Honghuang Lin, Hong Yu
2023	J	`jnl`	Evaluating the efficacy of NoteAid on EHR note comprehension among US Veterans through Amazon Mechanical Turk. Int. J. Medical Informatics John P. Lalor, Hao Wu, Kathleen M. Mazor, Hong Yu
2023	—	`conf`	Generating User-Engaging News Headlines. ACL (1) Pengshan Cai, Kaiqiang Song, Sangwoo Cho, Hongwei Wang, Xiaoyang Wang, Hong Yu, Fei Liu, Dong Yu
2023	—	`conf`	Intent-based Web Page Summarization with Structure-Aware Chunking and Generative Language Models. WWW (Companion Volume) Huan-Yuan Chen, Hong Yu
2023	J	`jnl`	Leveraging Large Language Models for Mental Health Prediction via Online Text Data. CoRR Xuhai Xu, Bingshen Yao, Yuanzhe Dong, Hong Yu, James A. Hendler, Anind K. Dey, Dakuo Wang
2023	A*	`conf`	Multi-Label Few-Shot ICD Coding as Autoregressive Generation with Prompt. AAAI Zhichao Yang, Sunjae Kwon, Zonghai Yao, Hong Yu
2023	J	`jnl`	NoteChat: A Dataset of Synthetic Doctor-Patient Conversations Conditioned on Clinical Notes. CoRR Junda Wang, Zonghai Yao, Zhichao Yang, Huixue Zhou, Rumeng Li, Xun Wang, Yucheng Xu, Hong Yu
2023	J	`jnl`	ODD: A Benchmark Dataset for the NLP-based Opioid Related Aberrant Behavior Detection. CoRR Sunjae Kwon, Xun Wang, Weisong Liu, Emily Druhl, Minhee L. Sung, Joel I. Reisman, Wenjun Li, Robert D. Kerns, William Becker, Hong Yu
2023	J	`jnl`	PaniniQA: Enhancing Patient Education Through Interactive Question Answering. CoRR Pengshan Cai, Zonghai Yao, Fei Liu, Dakuo Wang, Meghan Reilly, Huixue Zhou, Lingxi Li, Yi Cao, Alok Kapoor, Adarsha Bajracharya, Dan Berlowitz, Hong Yu
2023	J	`jnl`	PaniniQA: Enhancing Patient Education Through Interactive Question Answering. Trans. Assoc. Comput. Linguistics Pengshan Cai, Zonghai Yao, Fei Liu, Dakuo Wang, Meghan Reilly, Huixue Zhou, Lingxi Li, Yi Cao, Alok Kapoor, Adarsha Bajracharya, Dan Berlowitz, Hong Yu
2023	J	`jnl`	README: Bridging Medical Jargon and Lay Understanding for Patient Education through Data-Centric NLP. CoRR Zonghai Yao, Nandyala Siddharth Kantu, Guanghao Wei, Hieu Tran, Zhangqi Duan, Sunjae Kwon, Zhichao Yang, README annotation team, Hong Yu
2023	—	`conf`	Revisiting the Architectures like Pointer Networks to Efficiently Improve the Next Word Distribution, Summarization Factuality, and Beyond. ACL (Findings) Haw-Shiuan Chang, Zonghai Yao, Alolika Gon, Hong Yu, Andrew McCallum
2023	J	`jnl`	Revisiting the Architectures like Pointer Networks to Efficiently Improve the Next Word Distribution, Summarization Factuality, and Beyond. CoRR Haw-Shiuan Chang, Zonghai Yao, Alolika Gon, Hong Yu, Andrew McCallum
2023	J	`jnl`	SELF-EXPLAIN: Teaching Large Language Models to Reason Complex Questions by Themselves. CoRR Jiachen Zhao, Zonghai Yao, Zhichao Yang, Hong Yu
2023	J	`jnl`	Synthetic Imitation Edit Feedback for Factual Alignment in Clinical Summarization. CoRR Prakamya Mishra, Zonghai Yao, Shuwei Chen, Beining Wang, Rohan Mittal, Hong Yu
2023	—	`conf`	Two Directions for Clinical Data Generation with Large Language Models: Data-to-Label and Label-to-Data. EMNLP (Findings) Rumeng Li, Xun Wang, Hong Yu
2023	—	`conf`	UMASS_BioNLP at MEDIQA-Chat 2023: Can LLMs generate high-quality synthetic note-oriented doctor-patient conversations? ClinicalNLP@ACL Junda Wang, Zonghai Yao, Avijit Mitra, Samuel Osebe, Zhichao Yang, Hong Yu
2023	J	`jnl`	UMASS_BioNLP at MEDIQA-Chat 2023: Can LLMs generate high-quality synthetic note-oriented doctor-patient conversations? CoRR Junda Wang, Zonghai Yao, Avijit Mitra, Samuel Osebe, Zhichao Yang, Hong Yu
2023	—	`conf`	Vision Meets Definitions: Unsupervised Visual Word Sense Disambiguation Incorporating Gloss Information. ACL (1) Sunjae Kwon, Rishabh Garodia, Minhwa Lee, Zhichao Yang, Hong Yu
2023	J	`jnl`	Vision Meets Definitions: Unsupervised Visual Word Sense Disambiguation Incorporating Gloss Information. CoRR Sunjae Kwon, Rishabh Garodia, Minhwa Lee, Zhichao Yang, Hong Yu
2023	A*	`conf`	Web Information Extraction for Social Good: Food Pantry Answering As an Example. WWW Huan-Yuan Chen, Hong Yu
2022	J	`jnl`	An Automatic SOAP Classification System Using Weakly Supervision And Transfer Learning. CoRR Sunjae Kwon, Zhichao Yang, Hong Yu
2022	Misc	`conf`	An Investigation of the Representation of Social Determinants of Health in the UMLS. AMIA Bhanu Pratap Singh Rawat, Hong Yu, Heather Keating, Raelene Goodwin, Emily Druhl
2022	J	`jnl`	Associations Between Natural Language Processing (NLP) Enriched Social Determinants of Health and Suicide Death among US Veterans. CoRR Avijit Mitra, Richeek Pradhan, Rachel D. Melamed, Kun Chen, David C. Hoaglin, Katherine L. Tucker, Joel I. Reisman, Zhichao Yang, Weisong Liu, Jack Tsai, Hong Yu
2022	J	`jnl`	Automated Identification of Eviction Status from Electronic Health Record Notes. CoRR Zonghai Yao, Jack Tsai, Weisong Liu, David A. Levy, Emily Druhl, Joel I. Reisman, Hong Yu
2022	J	`jnl`	Context Variance Evaluation of Pretrained Language Models for Prompt-based Biomedical Knowledge Probing. CoRR Zonghai Yao, Yi Cao, Zhichao Yang, Hong Yu
2022	J	`jnl`	Enhancing the prediction of disease outcomes using electronic health records and pretrained deep learning models. CoRR Zhichao Yang, Weisong Liu, Dan Berlowitz, Hong Yu
2022	Misc	`conf`	Extracting Biomedical Factual Knowledge Using Pretrained Language Model and Electronic Health Record Context. AMIA Zonghai Yao, Yi Cao, Zhichao Yang, Vijeta Deshpande, Hong Yu
2022	J	`jnl`	Extracting Biomedical Factual Knowledge Using Pretrained Language Model and Electronic Health Record Context. CoRR Zonghai Yao, Yi Cao, Zhichao Yang, Vijeta Deshpande, Hong Yu
2022	B	`conf`	Generation of Patient After-Visit Summaries to Support Physicians. COLING Pengshan Cai, Fei Liu, Adarsha Bajracharya, Joe Sills, Alok Kapoor, Weisong Liu, Dan Berlowitz, David A. Levy, Richeek Pradhan, Hong Yu
2022	—	`conf`	Knowledge Injected Prompt Based Fine-tuning for Multi-label Few-shot ICD Coding. EMNLP (Findings) Zhichao Yang, Shufan Wang, Bhanu Pratap Singh Rawat, Avijit Mitra, Hong Yu
2022	J	`jnl`	Knowledge Injected Prompt Based Fine-tuning for Multi-label Few-shot ICD Coding. CoRR Zhichao Yang, Shufan Wang, Bhanu Pratap Singh Rawat, Avijit Mitra, Hong Yu
2022	—	`conf`	Learning as Conversation: Dialogue Systems Reinforced for Information Acquisition. NAACL-HLT Pengshan Cai, Hui Wan, Fei Liu, Mo Yu, Hong Yu, Sachindra Joshi
2022	J	`jnl`	Learning as Conversation: Dialogue Systems Reinforced for Information Acquisition. CoRR Pengshan Cai, Hui Wan, Fei Liu, Mo Yu, Hong Yu, Sachindra Joshi
2022	A*	`conf`	MedJEx: A Medical Jargon Extraction Model with Wiki's Hyperlink Span and Contextualized Masked Language Model Score. EMNLP Sunjae Kwon, Zonghai Yao, Harmon S. Jordan, David A. Levy, Brian Corner, Hong Yu
2022	J	`jnl`	MedJEx: A Medical Jargon Extraction Model with Wiki's Hyperlink Span and Contextualized Masked Language Model Score. CoRR Sunjae Kwon, Zonghai Yao, Harmon S. Jordan, David A. Levy, Brian Corner, Hong Yu
2022	J	`jnl`	Multi-label Few-shot ICD Coding as Autoregressive Generation with Prompt. CoRR Zhichao Yang, Sunjae Kwon, Zonghai Yao, Hong Yu
2022	—	`conf`	Parameter Efficient Transfer Learning for Suicide Attempt and Ideation Detection. LOUHI@EMNLP Bhanu Pratap Singh Rawat, Hong Yu
2022	—	`conf`	ScAN: Suicide Attempt and Ideation Events Dataset. NAACL-HLT Bhanu Pratap Singh Rawat, Samuel Kovaly, Hong Yu, Wilfred R. Pigeon
2022	J	`jnl`	ScAN: Suicide Attempt and Ideation Events Dataset. CoRR Bhanu Pratap Singh Rawat, Samuel Kovaly, Wilfred R. Pigeon, Hong Yu
2021	—	`conf`	Epinoter: A Natural Language Processing Tool for Epidemiological Studies. HEALTHINF Weisong Liu, Fei Li, Yonghao Jin, Edgard Granillo, Jorge Yarzebski, Wenjun Li, Hong Yu
2021	—	`conf`	Improving Formality Style Transfer with Context-Aware Rule Injection. ACL/IJCNLP (1) Zonghai Yao, Hong Yu
2021	J	`jnl`	Improving Formality Style Transfer with Context-Aware Rule Injection. CoRR Zonghai Yao, Hong Yu
2021	J	`jnl`	Membership Inference Attack Susceptibility of Clinical Language Models. CoRR Abhyuday Jagannatha, Bhanu Pratap Singh Rawat, Hong Yu
2021	J	`jnl`	Neural data-to-text generation with dynamic content planning. Knowl. Based Syst. Kai Chen, Fayuan Li, Baotian Hu, Weihua Peng, Qingcai Chen, Hong Yu, Yang Xiang
2020	—	`conf`	BENTO: A Visual Platform for Building Clinical NLP Pipelines Based on CodaLab. ACL (demo) Yonghao Jin, Fei Li, Hong Yu
2020	Misc	`conf`	Bleeding Entity Recognition in Electronic Health Records: A Comprehensive Analysis of End-to-End Systems. AMIA Avijit Mitra, Bhanu Pratap Singh Rawat, David McManus, Alok Kapoor, Hong Yu
2020	A*	`conf`	Calibrating Structured Output Predictors for Natural Language Processing. ACL Abhyuday Jagannatha, Hong Yu
2020	J	`jnl`	Calibrating Structured Output Predictors for Natural Language Processing. CoRR Abhyuday Jagannatha, Hong Yu
2020	B	`conf`	Conversational Machine Comprehension: a Literature Review. COLING Somil Gupta, Bhanu Pratap Singh Rawat, Hong Yu
2020	—	`conf`	Dynamic Data Selection for Curriculum Learning via Ability Estimation. EMNLP (Findings) John P. Lalor, Hong Yu
2020	J	`jnl`	Dynamic Data Selection for Curriculum Learning via Ability Estimation. CoRR John P. Lalor, Hong Yu
2020	—	`conf`	Generating Accurate EHR Assessment from Medical Graph. EMNLP (Findings) Zhichao Yang, Hong Yu
2020	A*	`conf`	ICD Coding from Clinical Text Using Multi-Filter Residual Convolutional Neural Network. AAAI Fei Li, Hong Yu
2020	J	`jnl`	Improved Pretraining for Domain-specific Contextual Embedding Models. CoRR Subendhu Rongali, Abhyuday Jagannatha, Bhanu Pratap Singh Rawat, Hong Yu
2020	Misc	`conf`	Inferring ADR causality by predicting the Naranjo Score from Clinical Notes. AMIA Bhanu Pratap Singh Rawat, Abhyuday Jagannatha, Feifan Liu, Hong Yu
2020	A*	`conf`	MetaMT, a Meta Learning Method Leveraging Multiple Domain Data for Low Resource Machine Translation. AAAI Rumeng Li, Xun Wang, Hong Yu
2020	J	`jnl`	Neural Data-to-Text Generation with Dynamic Content Planning. CoRR Kai Chen, Fayuan Li, Baotian Hu, Weihua Peng, Qingcai Chen, Hong Yu
2020	Misc	`conf`	Neural Multi-Task Learning for Adverse Drug Reaction Extraction. AMIA Feifan Liu, Xiaoyu Zheng, Hong Yu, Jennifer Tjia
2019	J	`jnl`	A Neural Abstractive Summarization Model Guided with Topic Sentences. Aust. J. Intell. Inf. Process. Syst. Kai Chen, Baotian Hu, Qingcai Chen, Hong Yu
2019	J	`jnl`	An investigation of single-domain and multidomain medication and adverse drug event relation extraction from electronic health record notes using advanced deep learning models. J. Am. Medical Informatics Assoc. Fei Li, Hong Yu
2019	—	`conf`	Bacteria Biotope Relation Extraction via Lexical Chains and Dependency Graphs. BioNLP-OST@EMNLP-IJNCLP Wuti Xiong, Fei Li, Ming Cheng, Hong Yu, Donghong Ji
2019	—	`conf`	Clinical Judgement Study using Question Answering from Electronic Health Records. MLHC Bhanu Pratap Singh Rawat, Fei Li, Hong Yu
2019	—	`conf`	Extracting Drug-drug Interactions with a Dependency-based Graph Convolution Neural Network. BIBM Wuti Xiong, Fei Li, Hong Yu, Donghong Ji
2019	—	`conf`	Generating Classical Chinese Poems from Vernacular Chinese. EMNLP/IJCNLP (1) Zhichao Yang, Pengshan Cai, Yansong Feng, Fei Li, Weijiang Feng, Elena Suet-Ying Chiu, Hong Yu
2019	J	`jnl`	Generating Classical Chinese Poems from Vernacular Chinese. CoRR Zhichao Yang, Pengshan Cai, Yansong Feng, Fei Li, Weijiang Feng, Elena Suet-Ying Chiu, Hong Yu
2019	J	`jnl`	ICD Coding from Clinical Text Using Multi-Filter Residual Convolutional Neural Network. CoRR Fei Li, Hong Yu
2019	—	`conf`	Learning Latent Parameters without Human Response Patterns: Item Response Theory with Artificial Crowds. EMNLP/IJCNLP (1) John P. Lalor, Hao Wu, Hong Yu
2019	J	`jnl`	Learning Latent Parameters without Human Response Patterns: Item Response Theory with Artificial Crowds. CoRR John P. Lalor, Hao Wu, Hong Yu
2019	J	`jnl`	Learning to detect and understand drug discontinuation events from clinical narratives. J. Am. Medical Informatics Assoc. Feifan Liu, Richeek Pradhan, Emily Druhl, Elaine T. Freund, Weisong Liu, Brian C. Sauer, Fran Cunningham, Adam J. Gordon, Celena B. Peters, Hong Yu
2019	J	`jnl`	MetaMT, a MetaLearning Method Leveraging Multiple Domain Data for Low Resource Machine Translation. CoRR Rumeng Li, Xun Wang, Hong Yu
2019	A*	`conf`	Naranjo Question Answering using End-to-End Multi-task Learning Model. KDD Bhanu Pratap Singh Rawat, Fei Li, Hong Yu
2018	Misc	`conf`	Accuracy of International Classification of Disease Clinical Modification Codes for Detecting Bleeding Events in Electronic Health Records and When to Use Them. AMIA Victoria J. Wang, Richeek Pradhan, Harmon S. Jordan, Arlene S. Ash, David McManus, Hong Yu
2018	Misc	`conf`	Detecting Hypoglycemia Incidents from Patients' Secure Messages. AMIA Jinying Chen, John P. Lalor, Hong Yu
2018	J	`jnl`	HYPE: A High Performing NLP System for Automatically Detecting Hypoglycemia Events from Electronic Health Record Notes. CoRR Yonghao Jin, Fei Li, Hong Yu
2018	Misc	`conf`	Reference Standard Development to Train Natural Language Processing Algorithms to Detect Problematic Buprenorphine-Naloxone Therapy. AMIA Celena B. Peters, Fran Cunningham, Hong Yu, Adam J. Gordon, Cedric L. Salone, Jessica Zacher, Ronald Carico, Jianwei Leng, Nikolh Smith-Nemard, Weisong Liu, Sophia Lu, Emily Druhl, Tina Huynh, Zachary Burningham, Feifan Liu, Brian C. Sauer
2018	—	`conf`	Sentence Simplification with Memory-Augmented Neural Networks. NAACL-HLT (2) Tu Vu, Baotian Hu, Tsendsuren Munkhdalai, Hong Yu
2018	J	`jnl`	Sentence Simplification with Memory-Augmented Neural Networks. CoRR Tu Vu, Baotian Hu, Tsendsuren Munkhdalai, Hong Yu
2018	A*	`conf`	Understanding Deep Learning Performance through an Examination of Test Set Difficulty: A Psychometric Case Study. EMNLP John Lalor, Hao Wu, Tsendsuren Munkhdalai, Hong Yu
2017	Misc	`conf`	A hybrid Neural Network Model for Joint Prediction of Medical Presence and Period Assertions in Clinical Notes. AMIA Rumeng Li, Abhyuday Jagannatha, Hong Yu
2017	J	`jnl`	An Analysis of Machine Learning Intelligence. CoRR John P. Lalor, Hao Wu, Tsendsuren Munkhdalai, Hong Yu
2017	Misc	`conf`	Assessing Electronic Health Record Readability. AMIA Jiaping Zheng, Hong Yu
2017	Misc	`conf`	Detecting Opioid-Related Aberrant Behavior using Natural Language Processing. AMIA Jesse M. Lingeman, Priscilla Wang, William Becker, Hong Yu
2017	—	`conf`	Exploiting PubMed for Protein Molecular Function Prediction via NMF Based Multi-label Classification. ICDM Workshops Samah J. Fodeh, Aditya Tiwari, Hong Yu
2017	Misc	`conf`	Generating a Test of Electronic Health Record Narrative Comprehension with Item Response Theory. AMIA John P. Lalor, Hao Wu, Li Chen, Kathleen M. Mazor, Hong Yu
2017	J	`jnl`	Improving Machine Learning Ability with Fine-Tuning. CoRR John P. Lalor, Hao Wu, Hong Yu
2017	A*	`conf`	Meta Networks. ICML Tsendsuren Munkhdalai, Hong Yu
2017	J	`jnl`	Meta Networks. CoRR Tsendsuren Munkhdalai, Hong Yu
2017	—	`conf`	Neural Semantic Encoders. EACL (1) Tsendsuren Munkhdalai, Hong Yu
2017	—	`conf`	Neural Tree Indexers for Text Understanding. EACL (1) Tsendsuren Munkhdalai, Hong Yu
2017	—	`conf`	Reasoning with Memory Augmented Neural Networks for Language Comprehension. ICLR (Poster) Tsendsuren Munkhdalai, Hong Yu
2017	J	`jnl`	Unsupervised Ensemble Ranking of Terms in Electronic Health Record Notes Based on Their Importance to Patients. CoRR Jinying Chen, Hong Yu
2017	J	`jnl`	Unsupervised ensemble ranking of terms in electronic health record notes based on their importance to patients. J. Biomed. Informatics Jinying Chen, Hong Yu
2016	J	`jnl`	Beyond Majority Voting: Generating Evaluation Scales using Item Response Theory. CoRR John P. Lalor, Hao Wu, Hong Yu
2016	—	`conf`	Bidirectional RNN for Medical Event Detection in Electronic Health Records. HLT-NAACL Abhyuday N. Jagannatha, Hong Yu
2016	J	`jnl`	Bidirectional Recurrent Neural Networks for Medical Event Detection in Electronic Health Records. CoRR Abhyuday Jagannatha, Hong Yu
2016	A*	`conf`	Building an Evaluation Scale using Item Response Theory. EMNLP John P. Lalor, Hao Wu, Hong Yu
2016	—	`conf`	Citation Analysis with Neural Attention Models. Louhi@EMNLP Tsendsuren Munkhdalai, John Lalor, Hong Yu
2016	J	`jnl`	Learning for Biomedical Information Extraction: Methodological Review of Recent Advances. CoRR Feifan Liu, Jinying Chen, Abhyuday Jagannatha, Hong Yu
2016	J	`jnl`	Learning to Rank Scientific Documents from the Crowd. CoRR Jesse M. Lingeman, Hong Yu
2016	J	`jnl`	Methods for linking EHR notes to education materials. Inf. Retr. J. Jiaping Zheng, Hong Yu
2016	J	`jnl`	Neural Semantic Encoders. CoRR Tsendsuren Munkhdalai, Hong Yu
2016	J	`jnl`	Neural Tree Indexers for Text Understanding. CoRR Tsendsuren Munkhdalai, Hong Yu
2016	J	`jnl`	Ranking medical jargon in electronic health record notes by adapted distant supervision. CoRR Jinying Chen, Abhyuday N. Jagannatha, Samah J. Jarad, Hong Yu
2016	J	`jnl`	Reasoning with Memory Augmented Neural Networks for Language Comprehension. CoRR Tsendsuren Munkhdalai, Hong Yu
2016	A*	`conf`	Structured prediction models for RNN based sequence labeling in clinical text. EMNLP Abhyuday Jagannatha, Hong Yu
2016	J	`jnl`	Structured prediction models for RNN based sequence labeling in clinical text. CoRR Abhyuday Jagannatha, Hong Yu
2015	—	`conf`	Identifying Key Concepts from EHR Notes Using Domain Adaptation. Louhi@EMNLP Jiaping Zheng, Hong Yu
2015	A*	`conf`	Key Concept Identification for Medical Information Retrieval. EMNLP Jiaping Zheng, Hong Yu
2015	—	`conf`	Mining and Ranking Biomedical Synonym Candidates from Wikipedia. Louhi@EMNLP Abhyuday Jagannatha, Jinying Chen, Hong Yu
2015	Misc	`conf`	Rethinking Document Retrieval for Scientific Literature: A Learning to Rank Approach. AMIA Jesse M. Lingeman, Hong Yu
2014	Misc	`conf`	Automatically Detecting Acute Myocardial Infarction Events from EHR Text: A Preliminary Study. AMIA Jiaping Zheng, Jorge Yarzebski, Balaji Polepalli Ramesh, Robert Goldberg, Hong Yu
2013	—	`conf`	Automatically Identifying Health- and Clinical-Related Content in Wikipedia. MedInfo Feifan Liu, Soheil Moosavinasab, Shashank Agarwal, Andrew S. Bennett, Hong Yu
2013	—	`conf`	CiteGraph: A Citation Network System for MEDLINE Articles and Analysis. MedInfo Qing Zhang, Hong Yu
2013	—	`conf`	Improving Patients' Electronic Health Record Comprehension with NoteAid. MedInfo Balaji Polepalli Ramesh, Thomas K. Houston, Cynthia Brandt, Hua Fang, Hong Yu
2012	J	`jnl`	Automatic discourse connective detection in biomedical text. J. Am. Medical Informatics Assoc. Balaji Polepalli Ramesh, Rashmi Prasad, Tim Miller, Brian Harrington, Hong Yu
2012	Misc	`conf`	MedTxting: Learning based and Knowledge Rich SMS-style Medical Text Contraction. AMIA Feifan Liu, Soheil Moosavinasab, Thomas K. Houston, Hong Yu
2011	J	`jnl`	AskHERMES: An online question answering system for complex clinical questions. J. Biomed. Informatics Yonggang Cao, Feifan Liu, Pippa Simpson, Lamont D. Antieau, Andrew S. Bennett, James J. Cimino, John W. Ely, Hong Yu
2011	J	`jnl`	Automatic figure classification in bioscience literature. J. Biomed. Informatics Daehyun Kim, Balaji Polepalli Ramesh, Hong Yu
2011	J	`jnl`	BioNOT: A searchable database of biomedical negated sentences. BMC Bioinform. Shashank Agarwal, Hong Yu, Isaac S. Kohane
2011	J	`jnl`	Figure summarizer browser extensions for PubMed Central. Bioinform. Shashank Agarwal, Hong Yu
2011	J	`jnl`	Parsing citations in biomedical articles using conditional random fields. Comput. Biol. Medicine Qing Zhang, Yonggang Cao, Hong Yu
2011	J	`jnl`	Simple and efficient machine learning frameworks for identifying protein-protein interaction relevant articles and experimental methods used to study the interactions. BMC Bioinform. Shashank Agarwal, Feifan Liu, Hong Yu
2011	J	`jnl`	The Biomedical Discourse Relation Bank. BMC Bioinform. Rashmi Prasad, Susan McRoy, Nadya Frid, Aravind K. Joshi, Hong Yu
2011	J	`jnl`	Toward automated consumer question answering: Automatically separating consumer questions from professional questions in the healthcare domain. J. Biomed. Informatics Feifan Liu, Lamont D. Antieau, Hong Yu
2011	J	`jnl`	Towards spoken clinical-question answering: evaluating and adapting automatic speech-recognition systems for spoken clinical questions. J. Am. Medical Informatics Assoc. Feifan Liu, Gökhan Tür, Dilek Hakkani-Tür, Hong Yu
2010	J	`jnl`	An IR-Aided Machine Learning Framework for the BioCreative II.5 Challenge. IEEE ACM Trans. Comput. Biol. Bioinform. Yonggang Cao, Zuofeng Li, Feifan Liu, Shashank Agarwal, Qing Zhang, Hong Yu
2010	J	`jnl`	Automatically extracting information needs from complex clinical questions. J. Biomed. Informatics Yonggang Cao, James J. Cimino, John W. Ely, Hong Yu
2010	J	`jnl`	Biomedical negation scope detection with conditional random fields. J. Am. Medical Informatics Assoc. Shashank Agarwal, Hong Yu
2010	J	`jnl`	Detecting hedge cues and their scope in biomedical text with conditional random fields. J. Biomed. Informatics Shashank Agarwal, Hong Yu
2010	J	`jnl`	Lancet: a high precision medication event extraction system for clinical text. J. Am. Medical Informatics Assoc. Zuofeng Li, Feifan Liu, Lamont D. Antieau, Yonggang Cao, Hong Yu
2009	J	`jnl`	Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion. Bioinform. Shashank Agarwal, Hong Yu
2009	—	`conf`	Evaluation of the Clinical Question Answering Presentation. BioNLP@HLT-NAACL Yonggang Cao, John W. Ely, Lamont D. Antieau, Hong Yu
2009	Misc	`conf`	FigSum: Automatically Generating Structured Text Summaries for Figures in Biomedical Literature. AMIA Shashank Agarwal, Hong Yu
2009	Misc	`conf`	Hierarchical Image Classification in the Bioscience Literature. AMIA Daehyun Kim, Hong Yu
2008	—	`conf`	A Pilot Annotation to Investigate Discourse Connectivity in Biomedical Text. BioNLP Hong Yu, Nadya Frid, Susan McRoy, Rashmi Prasad, Alan Lee, Aravind K. Joshi
2008	Misc	`conf`	Automatically Extracting Information Needs from Ad Hoc Clinical Questions. AMIA Hong Yu, Yonggang Cao
2008	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing K. Bretonnel Cohen, Hong Yu, Philip E. Bourne, Lynette Hirschman
2007	J	`jnl`	Development, implementation, and a cognitive evaluation of a definitional question answering system for physicians. J. Biomed. Informatics Hong Yu, Minsuk Lee, David R. Kaufman, John W. Ely, Jerome A. Osheroff, George Hripcsak, James J. Cimino
2007	J	`jnl`	Frontiers of biomedical text mining: current progress. Briefings Bioinform. Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin Bretonnel Cohen
2007	J	`jnl`	Natural language processing and visualization in the molecular imaging domain. J. Biomed. Informatics P. Karina Tulipano, Ying Tao, William S. Millar, Pat Zanzonico, Katherine Kolbert, Hua Xu, Hong Yu, Lifeng Chen, Yves A. Lussier, Carol Friedman
2007	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, K. Bretonnel Cohen
2007	J	`jnl`	Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles. J. Biomed. Informatics Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur
2006	J	`jnl`	A large scale, corpus-based approach for automatically disambiguating biomedical abbreviations. ACM Trans. Inf. Syst. Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur
2006	—	`conf`	Accessing bioscience images from abstract sentences. ISMB (Supplement of Bioinformatics) Hong Yu, Minsuk Lee
2006	Misc	`conf`	Beyond Information Retrieval - Medical Question Answering. AMIA Minsuk Lee, James J. Cimino, Hai Ran Zhu, Carl L. Sable, Vijay Shanker, John W. Ely, Hong Yu
2006	—	`conf`	BioEx: A Novel User-Interface that Accesses Images from Abstract Sentences. HLT-NAACL Hong Yu, Minsuk Lee
2006	—	`conf`	Exploring Text and Image Features to Classify Images in Bioscience Literature. BioNLP@NAACL-HLT Barry Rafkind, Minsuk Lee, Shih-Fu Chang, Hong Yu
2006	J	`jnl`	Exploring supervised and unsupervised methods to detect topics in biomedical text. BMC Bioinform. Minsuk Lee, Weiqing Wang, Hong Yu
2006	—	`ch.`	Extracting Opinion Propositions and Opinion Holders using Syntactic and Lexical Cues. Computing Attitude and Affect in Text Steven Bethard, Hong Yu, Ashley Thornton, Vasileios Hatzivassiloglou, Dan Jurafsky
2005	Misc	`conf`	Question Analysis for Biomedical Question Answering. AMIA Carl L. Sable, Minsuk Lee, Hai Ran Zhu, Hong Yu
2004	J	`jnl`	GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. J. Biomed. Informatics Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur
2004	B	`conf`	Using MEDLINE as a Knowledge Source for Disambiguating Abbreviations in Full-Text Biomedical Journal Articles. CBMS Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur
2002	Misc	`conf`	Automatic extraction of gene and protein synonyms from MEDLINE and journal articles. AMIA Hong Yu, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky, W. John Wilbur
2002	J	`jnl`	Automatically identifying gene/protein terms in MEDLINE abstracts. J. Biomed. Informatics Hong Yu, Vasileios Hatzivassiloglou, Andrey Rzhetsky, W. John Wilbur
2002	—	`conf`	Building a Foundation System for Producing Short Answers to Factual Questions. TREC Sameer S. Pradhan, Valerie Krugler, Steven Bethard, Wayne H. Ward, Daniel Jurafsky, James H. Martin, Sasha Blair-Goldensohn, Andrew Hazen Schlaikjer, Elena Filatova, Pablo Ariel Duboue, Hong Yu, Rebecca J. Passonneau, Vasileios Hatzivassiloglou, Kathleen R. McKeown, Gabriel Illouz
2002	J	`jnl`	Research Paper: Mapping Abbreviations to Full Forms in Biomedical Articles. J. Am. Medical Informatics Assoc. Hong Yu, George Hripcsak, Carol Friedman
2001	—	`conf`	GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. ISMB (Supplement of Bioinformatics) Carol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky
2001	—	`conf`	GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman
2000	Misc	`conf`	A Large Scale, Cross-disease Family Health History Data Set. AMIA Hong Yu, George Hripcsak
2000	Misc	`conf`	Hereditary Disease Discovery from a Clinical Data Warehouse. AMIA Hong Yu, George Hripcsak
1999	Misc	`conf`	Representing genomic knowledge in the UMLS semantic network. AMIA Hong Yu, Carol Friedman, Andrey Rzhetsky, Pauline Kra