Hong Cui

52 papers C 1Journal 24Unranked 25
YearRankTypeTitle / Venue / Authors
2025 J jnl
Adopting Maximum Pupil Diameter to Detect Subtle Usability Issues of a Smartphone Application, Conflict Solver.
Int. J. Hum. Comput. Interact.
Limin Zhang, Hong Cui
2025 J jnl
Helping authors produce FAIR taxonomic data: evaluation of an author-driven phenotype data production prototype.
Database J. Biol. Databases Curation
Limin Zhang, Julian R. Starr, Bruce Ford, Anton Reznicek, Yuxuan Zhou, Étienne Léveillé-Bourret, Étienne Lacroix-Carignan, Jacques Cayouette, Tyler W. Smith, Donald Sutherland, Paul Catling, Jeffery M. Saarela, Hong Cui, James A. Macklin
2024 — conf
PenLab: Towards Understanding of Active Collaboration for Solid Geometry Teaching.
CHI Extended Abstracts
Dehui Kong, Hongyue Wang, Sijie Zhou, Hong Cui, Zhiquan Feng
2023 — conf
From Noisy Data to Useful Color Palettes: One Step in Making Biodiversity Data FAIR.
iConference (1)
Hong Cui, Noah Giebink, Julian R. Starr, Dylan Longert, Bruce Ford, Étienne Léveillé-Bourret
2023 J jnl
MAG: a smart gloves system based on multimodal fusion perception.
CCF Trans. Pervasive Comput. Interact.
Hong Cui, Zhiquan Feng, Jinglan Tian, Dehui Kong, Zishuo Xia, Weina Li
2022 J jnl
Authors' attitude toward adopting a new workflow to improve the computability of phenotype publications.
Database J. Biol. Databases Curation
Hong Cui, Bruce Ford, Julian R. Starr, Anton Reznicek, Limin Zhang, James A. Macklin
2021 — conf
A Peek into the US Informal STEM Landscape through Theconnectory.org.
ASIST
Sebastian Deimen, Hong Cui, Michelle Higgins
2021 — conf
Internet of Samples.
ASIST
Stephen M. Richard, David Vieglais, Hong Cui, Neil Davies, John Deck, Quan Gan, Eric C. Kansa, Sarah Whitcher Kansa, John A. Kunze, Danny Mandel, Christopher Meyer, Thomas Orrell, Sarah Ramdeen, Rebecca Snyder, Ramona L. Walls, Yuxuan Zhou, Kerstin A. Lehnert
2021 J jnl
P3H4 Overexpression Serves as a Prognostic Factor in Lung Adenocarcinoma.
Comput. Math. Methods Medicine
Xiangfeng Jin, Haiqing Zhou, Jianfang Song, Hong Cui, Yiren Luo, Haiping Jiang
2021 J jnl
Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study.
Database J. Biol. Databases Curation
Limin Zhang, Xingyi Yang, Zuleima Cota, Hong Cui, Bruce Ford, Hsin-liang Oliver Chen, James A. Macklin, Anton Reznicek, Julian R. Starr
2020 — conf
Enabling Authors to Produce Computable Phenotype Measurements: Usability Studies on the Measurement Recorder.
HCI (48)
Limin Zhang, Hong Cui, Bruce Ford, Hsin-liang Cheng, James A. Macklin, Anton Reznicek, Julian R. Starr
2020 J jnl
Innovative UX Methods for Information Access Based on Interdisciplinary Approaches: Practical Lessons from Academia and Industry.
Data Inf. Manag.
Fei Yu, Laura Ruel, Ryan Tyler, Qian Xu, Hong Cui, Stan Karanasios, Ba Xuan Nguyen, Anna Keilbach, Javed Mostafa
2019 — conf
Developing community phenotype ontologies: Understanding users' preferences.
ASIST
Limin Zhang, Zuleima Cota, Hong Cui, Hsin-liang Oliver Chen, Bruce Ford, Joel Sach, Jocelyn E. Pender, James A. Macklin, Anton Reznicek, Julian R. Starr
2018 — conf
A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants.
ICBO
Lorena Endara, J. Gordon Burleigh, Laurel Cooper, Pankaj Jaiswal, Marie-Angélique Laporte, Hong Cui
2018 — ch.
Accelerating the Large-Scale Study of Prokaryotic Phenotypes and Niche Space Evolution Through Time Using the MicrO Ontology, MicroPIE, and MicroPIEDigester Software.
Application of Semantic Technology in Biodiversity Science
Carrine E. Blank, Hong Cui, Jin Mao, Lisa R. Moore, Robert W. Thacker, Ramona L. Walls
2018 J jnl
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.
Database J. Biol. Databases Curation
Wasila M. Dahdul, Prashanti Manda, Hong Cui, James P. Balhoff, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Todd J. Vision, Paula M. Mabee
2018 J jnl
Identifying bacterial biotope entities using sequence labeling: Performance and feature analysis.
J. Assoc. Inf. Sci. Technol.
Jin Mao, Hong Cui
2018 — conf
Using Shallow Semantic Analysis to Implement Automated Quality Assessment of Web Health Care Information.
CICLing (2)
Yanjun Zhang, Robert E. Mercer, Jacquelyn A. Burkell, Hong Cui
2018 — conf
Where Are iSchools Heading?
iConference
Vikas Yadav, Farig Sadeque, P. Bryan Heidorn, Hong Cui
2016 J jnl
Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building.
BMC Bioinform.
Hong Cui, Dongfang Xu, Steven S. Chong, Martin Ramirez, Thomas Rodenhausen, James A. Macklin, Bertram Ludäscher, Robert A. Morris, Eduardo M. Soto, Nicolás Mongiardino Koch
2016 J jnl
MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions.
J. Biomed. Semant.
Carrine E. Blank, Hong Cui, Lisa R. Moore, Ramona L. Walls
2016 J jnl
Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources.
BMC Bioinform.
Jin Mao, Lisa R. Moore, Carrine E. Blank, Elvis Hsin-Hui Wu, Marcia Ackerman, Sonali Ranade, Hong Cui
2016 — conf
MultiLayerMatrix: Visualizing Large Taxonomic Datasets.
EuroVA@EuroVis
Dang Tuan Nhon, Hong Cui, Angus G. Forbes
2015 — conf
CharaParser+EQ: Performance evaluation without gold standard.
ASIST
Hong Cui, Wasila M. Dahdul, T. Alexander Dececchi, Nizar Ibrahim, Paula M. Mabee, James P. Balhoff, Hariharan Gopalakrishnan
2015 J jnl
OTO: Ontology Term Organizer.
BMC Bioinform.
Fengqiong Huang, James A. Macklin, Hong Cui, Heather A. Cole, Lorena Endara
2014 J jnl
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.
J. Biomed. Semant.
Wasila M. Dahdul, Hong Cui, Paula M. Mabee, Christopher J. Mungall, David Osumi-Sutherland, Ramona L. Walls, Melissa A. Haendel
2013 J jnl
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
Database J. Biol. Databases Curation
Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin G. Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu
2012 J jnl
Applications of Natural Language Processing in Biodiversity Science.
Adv. Bioinformatics
Anne E. Thessen, Hong Cui, Dmitry Mozzherin
2012 J jnl
CharaParser for fine-grained semantic annotation of organism morphological descriptions.
J. Assoc. Inf. Sci. Technol.
Hong Cui
2012 — conf
Evaluating the botanical coverage of PATO using an unsupervised learning algorithm.
iConference
Alyssa Janning, Hong Cui
2012 — conf
Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources.
ICBO
Ramona L. Walls, Hong Cui, James A. Macklin, Chris Mungall, Laurel Cooper, Dennis W. Stevenson, Pankaj Jaiswal
2012 — conf
OTO: Ontology term organizer.
ASIST
Fengqiong Huang, James A. Macklin, Paul J. Morris, Partha Pratim Sanyal, Robert A. Morris, Hong Cui
2011 — conf
Combine unsupervised learning and heuristic rules to annotate organism morphological descriptions.
ASIST
Hong Cui, Sriramu Singaram, Alyssa Janning
2010 J jnl
Competency evaluation of plant character ontologies against domain literature.
J. Assoc. Inf. Sci. Technol.
Hong Cui
2010 — conf
From text to RDF triple store: An application for biodiversity literature.
ASIST
Hong Cui, Kenneth (Yang) Jiang, Partha Pratim Sanyal
2010 J jnl
Semantic annotation of biosystematics literature without training examples.
J. Assoc. Inf. Sci. Technol.
Hong Cui, David Boufford, Paul Selden
2010 J jnl
Semantic annotation of morphological descriptions: an overall strategy.
BMC Bioinform.
Hong Cui
2010 — conf
Tools for Semantic Annotation of Taxonomic Descriptions.
KES (4)
Hong Cui, Partha Pratim Sanyal, Chunshui Yu
2010 — conf
Unsupervised extraction of text segments from heterogeneous document collections.
ASIST
Hong Cui
2009 J jnl
An Application for Semantic Markup of Biodiversity Documents.
Bull. IEEE Tech. Comm. Digit. Libr.
Hong Cui
2009 — conf
Application of semantic annotation for quality insurance in biosystematics publishing.
ASIST
Hong Cui, Chunshui Yu, James A. Macklin
2009 C conf
Intelligent feature extraction and knowledge mining by multivariate analyses.
CIDM
Yisong Chen, Hong Cui
2008 — conf
An application for semantic markup of biodiversity documents.
JCDL
Hong Cui
2008 — conf
Unsupervised semantic markup of literature for biodiversity digital libraries.
JCDL
Hong Cui
2007 J jnl
The reusability of induced knowledge for the automatic semantic markup of taxonomic descriptions.
J. Assoc. Inf. Sci. Technol.
Hong Cui, P. Bryan Heidorn
2007 J jnl
Unsupervised Structure Discovery for Biodiversity Information.
Bull. IEEE Tech. Comm. Digit. Libr.
Hong Cui, Richard M. McCourt, Monique Feist
2006 — conf
Automated concept discovery in corpora of morphological descriptions.
ASIST
Hong Cui, Richard M. McCourt, Monique Feist
2006 — conf
Unsupervised structure discovery for biodiversity information.
JCDL
Hong Cui, Richard M. McCourt, Monique Feist
2005 — —
Automating Semantic Markup of Semi-Structured Text via an Induced Knowledge Base: A Case Study Using Floras
Hong Cui
2005 J jnl
How Do Search Engines Handle Chinese Queries?
Webology
Haidar Moukdad, Hong Cui
2005 — conf
MARTT: Using induced knowledge base to automatically mark up plant taxonomic descriptions with XML.
ASIST
Hong Cui
2002 — conf
An approach to automatic classification of text for information retrieval.
JCDL
Hong Cui, P. Bryan Heidorn, Hong Zhang