Hong-Jie Dai - RankMe

81 papers A* 1A 1B 1C 1Misc 6Journal 47Unranked 22

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Hierarchical Temporal Attention Networks for Cancer Registry Abstraction: Leveraging Longitudinal Clinical Data With Interpretability. IEEE J. Biomed. Health Informatics Hong-Jie Dai, Han-Hsiang Wu
2025	—	`conf`	Blind Testing Method to Validate the Efficiency of ICD-10-CM Artificial Intelligence Coding Modules. MedInfo Chih-Yen Sun, Zheng-Hao Li, Ming-Ju Tsai, Chung-Cheng Tsai, Hong-Jie Dai
2025	J	`jnl`	Leveraging large language models for the deidentification and temporal normalization of sensitive health information in electronic health records. npj Digit. Medicine Hong-Jie Dai, Tatheer Hussain Mir, Ching-Tai Chen, Chien-Chang Chen, Hao-Ping Yang, Chung-Hong Lee, Yi-Yun Chou, Yu-Chin Teng, Shalini Gupta, Omkar Panchal, Divyabharathy Ramesh Nadar, Wei-Hsiang Liao, Yu-Chuan Lin, Zi-Rui Zhao, Richard Tzong-Han Tsai, Yung-Chun Chang, Jitendra Jonnagaddala
2025	J	`jnl`	Model selection meets clinical semantics: Optimizing ICD-10-CM prediction via LLM-as-Judge evaluation, redundancy-aware sampling, and section-aware fine-tuning. CoRR Hong-Jie Dai, Zheng-Hao Li, An-Tai Lu, Bo-Tsz Shain, Ming-Ta Li, Tatheer Hussain Mir, Kuang-Te Wang, Min-I Su, Pei-Kang Liu, Ming-Ju Tsai
2025	J	`jnl`	Multi-label advertising image classification using traditional deep neural networks and vision language models: dataset and annotation agreement method. Multim. Tools Appl. Tatheer Hussain Mir, Jui-Cheng Wei, Mutiara Simanjuntak, Wan-Shu Cheng, Yi-Hsun Lee, You-Chen Zhang, Jia-Bin Chen, Hong-Jie Dai
2023	J	`jnl`	Augmenting DSM-5 diagnostic criteria with self-attention-based BiLSTM models for psychiatric diagnosis. Artif. Intell. Medicine Chi-Shin Wu, Chien-Hung Chen, Chu-Hsien Su, Yi-Ling Chien, Hong-Jie Dai, Hsin-Hsi Chen
2023	J	`jnl`	Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
2022	J	`jnl`	Principle-Based Approach for the De-Identification of Code-Mixed Electronic Health Records. IEEE Access Chen-Kai Wang, Feng-Duo Wang, You-Qian Lee, Pei-Tsz Chen, Bo-Hong Wang, Chu-Hsien Su, Joseph Chin-Chi Kuo, Chi-Shin Wu, Yi-Ling Chien, Hong-Jie Dai, Vincent S. Tseng, Wen-Lian Hsu
2021	J	`jnl`	Cancer Registry Coding via Hybrid Neural Symbolic Systems in the Cross-Hospital Setting. IEEE Access Hong-Jie Dai, Yi-Hsin Connie Yang, Ti-Hao Wang, Yan-Jie Lin, Pin-Jou Lu, Chung-Yang Wu, Yu-Cheng Chang, You-Qian Lee, You-Chen Zhang, Yuan-Chi Hsu, Han-Hsiang Wu, Cheng-Rong Ke, Chih-Jen Huang, Yu-Tsang Wang, Sheau-Fang Yang, Kuan-Chung Hsiao, Ko-Jiunn Liu, Li-Tzong Chen, I-Shou Chang, K. S. Clifford Chao, Tsang-Wu Liu
2021	—	`conf`	Protected Health Information Recognition of Unstructured Code-Mixed Electronic Health Records in Taiwan. MedInfo You-Qian Lee, Bo-Hong Wang, Chu-Hsien Su, Pei-Tsz Chen, Wu-Qing Lin, Chi-Shin Wu, Hong-Jie Dai
2020	J	`jnl`	Adverse drug event and medication extraction in electronic health records via a cascading architecture with different sequence labeling models and word embeddings. J. Am. Medical Informatics Assoc. Hong-Jie Dai, Chu-Hsien Su, Chi-Shin Wu
2020	—	`conf`	Cancer Registry Information Extraction via Transfer Learning. ClinicalNLP@EMNLP Yan-Jie Lin, Hong-Jie Dai, You-Chen Zhang, Chung-Yang Wu, Yu-Cheng Chang, Pin-Jou Lu, Chih-Jen Huang, Yu-Tsang Wang, Hui-Min Hsieh, Kun-San Chao, Tsang-Wu Liu, I-Shou Chang, Yi-Hsin Connie Yang, Ti-Hao Wang, Ko-Jiunn Liu, Li-Tzong Chen, Sheau-Fang Yang
2020	J	`jnl`	Cohort selection for clinical trials using multiple instance learning. J. Biomed. Informatics Hong-Jie Dai, Feng-Duo Wang, Chih-Wei Chen, Chu-Hsien Su, Chi-Shin Wu, Jitendra Jonnagaddala
2020	—	`conf`	ISLab System for SMM4H Shared Task 2020. SMM4H@COLING Chen-Kai Wang, Hong-Jie Dai, You-Chen Zhang, Bo-Chun Xu, Bo-Hong Wang, You-Ning Xu, Po-Hao Chen, Chung-Hong Lee
2019	—	`conf`	BIGODM System in the Social Media Mining for Health Applications Shared Task 2019. SMM4H@ACL Chen-Kai Wang, Hong-Jie Dai, Bo-Hung Wang
2019	J	`jnl`	Classifying adverse drug reactions from imbalanced twitter data. Int. J. Medical Informatics Hong-Jie Dai, Chen-Kai Wang
2019	Misc	`conf`	Depressive Symptoms and Functional Impairments Extraction From Electronic Health Records. ICMLC You-Chen Zhang, Chung-Hong Lee, Tyng-Yeu Liang, Wei-Che Chung, Kuei-Han Li, Cheng-Chieh Huang, Hong-Jie Dai, Chi-Shin Wu, Chian-Jue Kuo, Chu-Hsien Su, Horng-Chang Yang
2019	J	`jnl`	Family member information extraction via neural sequence labeling models with different tag schemes. BMC Medical Informatics Decis. Mak. Hong-Jie Dai
2019	J	`jnl`	Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. Database J. Biol. Databases Curation Rezarta Islamaj Dogan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C. Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C. Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altinel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang, Hong-Jie Dai, Tung Tran, Ramakanth Kavuluru, Ling Luo, Albert Steppi, Jinfeng Zhang, Jinchan Qu, Zhiyong Lu
2019	J	`jnl`	Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature. Database J. Biol. Databases Curation Hong-Jie Dai, Chen-Kai Wang, Nai-Wen Chang, Ming-Siang Huang, Jitendra Jonnagaddala, Feng-Duo Wang, Wen-Lian Hsu
2019	—	`ch.`	Translational Bioinformatics Databases. Encyclopedia of Bioinformatics and Computational Biology (2) Onkar Singh, Nai-Wen Chang, Hong-Jie Dai, Jitendra Jonnagaddala
2018	—	`conf`	Adverse Drug Reaction Post Classification with Imbalanced Classification Techniques. TAAI Chen-Kai Wang, Hong-Jie Dai, Feng-Duo Wang, Emily Chia-Yu Su
2018	—	`conf`	An Ensemble Neural Network Model for Benefiting Pregnancy Health Stats from Mining Social Media. AIRS Neha Warikoo, Yung-Chun Chang, Hong-Jie Dai, Wen-Lian Hsu
2018	J	`jnl`	SPRENO: a BioC module for identifying organism terms in figure captions. Database J. Biol. Databases Curation Hong-Jie Dai, Onkar Singh
2017	J	`jnl`	Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy. Database J. Biol. Databases Curation Nai-Wen Chang, Hong-Jie Dai, Yung-Yu Shih, Chi-Yang Wu, Mira Anne C. dela Rosa, Rofeamor P. Obena, Yu-Ju Chen, Wen-Lian Hsu, Yen-Jen Oyang
2017	—	`conf`	Incorporating Dependency Trees Improve Identification of Pregnant Women on Social Media Platforms. DDDSM@IJCNLP Yi-Jie Huang, Chu-Hsien Su, Yi-Chun Chang, Tseng-Hsin Ting, Tzu-Yuan Fu, Rou-Min Wang, Hong-Jie Dai, Yung-Chun Chang, Jitendra Jonnagaddala, Wen-Lian Hsu
2017	—	`conf`	NTTMU System in the 2nd Social Media Mining for Health Applications Shared Task. SMM4H@AMIA Chen-Kai Wang, Nai-Wun Chang, Emily Chia-Yu Su, Hong-Jie Dai
2017	—	`conf`	Principle Base Approach for Classifying Tweets with Flu-related Information in NTCIR-13 MedWeb Task. NTCIR Josan Wei-San Lin, Hong-Jie Dai, Joni Yu-Hsuan Shao
2017	—	`ed.`	Proceedings of the International Workshop on Digital Disease Detection using Social Media, DDDSM@IJCNLP 2017, Taipei, Taiwan, November 27, 2017 DDDSM@IJCNLP Jitendra Jonnagaddala, Hong-Jie Dai, Yung-Chun Chang
2017	—	`conf`	Using a Recurrent Neural Network Model for Classification of Tweets Conveyed Influenza-related Information. DDDSM@IJCNLP Chen-Kai Wang, Onkar Singh, Zhao-Li Tang, Hong-Jie Dai
2016	J	`jnl`	BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database J. Biol. Databases Curation Sun Kim, Rezarta Islamaj Dogan, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su, Chun-Han Chu, Chien Chin Chen, Wen-Lian Hsu, Yifan Peng, Cecilia N. Arighi, Cathy H. Wu, K. Vijay-Shanker, Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür, Soo-Yong Shin, Dongseop Kwon, Kara Dolinski, Mike Tyers, W. John Wilbur, Donald C. Comeau
2016	—	`conf`	Combining Multiple Classifiers Using Global Ranking for ReachOut.com Post Triage. CLPsych@HLT-NAACL Chen-Kai Wang, Hong-Jie Dai, Chih-Wei Chen, Jitendra Jonnagaddala, Nai-Wen Chang
2016	J	`jnl`	Feature Engineering for Recognizing Adverse Drug Reactions from Twitter Posts. Inf. Hong-Jie Dai, Musa Touray, Jitendra Jonnagaddala, Syed Abdul Shabbir
2016	J	`jnl`	Improving the dictionary lookup approach for disease normalization using enhanced dictionary and query expansion. Database J. Biol. Databases Curation Jitendra Jonnagaddala, Toni Rose Jue, Nai-Wen Chang, Hong-Jie Dai
2016	J	`jnl`	MET network in PubMed: a text-mined network visualization and curation system. Database J. Biol. Databases Curation Hong-Jie Dai, Chu-Hsien Su, Po-Ting Lai, Ming-Siang Huang, Jitendra Jonnagaddala, Toni Rose Jue, Shruti Rao, Hui-Jou Chou, Marija Milacic, Onkar Singh, Syed Abdul Shabbir, Wen-Lian Hsu
2016	J	`jnl`	NTTMUNSW BioC modules for recognizing and normalizing species and gene/protein mentions. Database J. Biol. Databases Curation Hong-Jie Dai, Onkar Singh, Jitendra Jonnagaddala, Emily Chia-Yu Su
2016	J	`jnl`	Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi
2016	C	`conf`	Statistical Principle-Based Approach for Detecting miRNA-Target Gene Interaction Articles. BIBE Nai-Wen Chang, Hong-Jie Dai, Yu-Lun Hsieh, Wen-Lian Hsu
2015	J	`jnl`	A context-aware approach for progression tracking of medical concepts in electronic medical records. J. Biomed. Informatics Nai-Wen Chang, Hong-Jie Dai, Jitendra Jonnagaddala, Chih-Wei Chen, Richard Tzong-Han Tsai, Wen-Lian Hsu
2015	—	`conf`	A preliminary study on automatic identification of patient smoking status in unstructured electronic health records. BioNLP@IJCNLP Jitendra Jonnagaddala, Hong-Jie Dai, Pradeep Ray, Siaw-Teng Liaw
2015	J	`jnl`	Coronary artery disease risk assessment from unstructured electronic health records using text mining. J. Biomed. Informatics Jitendra Jonnagaddala, Siaw-Teng Liaw, Pradeep Ray, Manish Kumar, Nai-Wen Chang, Hong-Jie Dai
2015	J	`jnl`	Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization. J. Cheminformatics Hong-Jie Dai, Po-Ting Lai, Yung-Chun Chang, Richard Tzong-Han Tsai
2015	—	`conf`	TMUNSW: Identification of Disorders and Normalization to SNOMED-CT Terminology in Unstructured Clinical Notes. SemEval@NAACL-HLT Jitendra Jonnagaddala, Siaw-Teng Liaw, Pradeep Kumar Ray, Manish Kumar, Hong-Jie Dai
2015	J	`jnl`	The CHEMDNER corpus of chemicals and drugs and its annotation principles. J. Cheminformatics Martin Krallinger, Obdulia Rabal, Florian Leitner, Miguel Vazquez, David Salgado, Zhiyong Lu, Robert Leaman, Yanan Lu, Donghong Ji, Daniel M. Lowe, Roger A. Sayle, Riza Theresa Batista-Navarro, Rafal Rak, Torsten Huber, Tim Rocktäschel, Sérgio Matos, David Campos, Buzhou Tang, Hua Xu, Tsendsuren Munkhdalai, Keun Ho Ryu, S. V. Ramanan, P. Senthil Nathan, Slavko Zitnik, Marko Bajec, Lutz Weber, Matthias Irmer, Saber A. Akhondi, Jan A. Kors, Shuo Xu, Xin An, Utpal Kumar Sikdar, Asif Ekbal, Masaharu Yoshioka, Thaer M. Dieb, Miji Choi, Karin Verspoor, Madian Khabsa, C. Lee Giles, Hongfang Liu, Ravikumar Komandur Elayavilli, Andre Lamurias, Francisco M. Couto, Hong-Jie Dai, Richard Tzong-Han Tsai, Caglar Ata, Tolga Can, Anabel Usie, Rui Alves, Isabel Segura-Bedmar, Paloma Martínez, Julen Oyarzabal, Alfonso Valencia
2015	—	`conf`	Utilizing different word representation methods for twitter data in adverse drug reactions extraction. TAAI Josan Wei-San Lin, Hong-Jie Dai, Jitendra Jonnagaddala, Nai-Wun Chang, Toni Rose Jue, Usman Iqbal, Joni Yu-Hsuan Shao, I-Jen Chiang, Yu-Chuan Li
2014	J	`jnl`	BioC interoperability track overview. Database J. Biol. Databases Curation Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
2014	—	`conf`	HTNSystem: Hypertension Information Extraction System for Unstructured Clinical Notes. TAAI Jitendra Jonnagaddala, Siaw-Teng Liaw, Pradeep Ray, Manish Kumar, Hong-Jie Dai
2014	J	`jnl`	Joint Learning of Entity Linking Constraints Using a Markov-Logic Network. Int. J. Comput. Linguistics Chin. Lang. Process. Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu
2014	J	`jnl`	LiverCancerMarkerRIF: a liver cancer biomarker interactive curation system combining text mining and expert annotations. Database J. Biol. Databases Curation Hong-Jie Dai, Johnny Chi-Yang Wu, Josan Wei-San Lin, Aaron James F. Reyes, Mira Anne C. dela Rosa, Syed Abdul Shabbir, Richard Tzong-Han Tsai, Wen-Lian Hsu
2014	J	`jnl`	Overview of the gene ontology task at BioCreative IV. Database J. Biol. Databases Curation Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N. Arighi, Peter McQuilton, G. Thomas Hayman, Susan Tweedie, Mary L. Schaeffer, Stanley J. F. Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-Jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu, Yanpeng Li, Hong Yu, Ehsan Emadzadeh, Graciela Gonzalez, Jian-Ming Chen, Hong-Jie Dai, Zhiyong Lu
2014	—	`conf`	Section Heading Recognition in Electronic Health Records Using Conditional Random Fields. TAAI Chih-Wei Chen, Nai-Wen Chang, Yung-Chun Chang, Hong-Jie Dai
2014	—	`conf`	TMUNSW: Disorder Concept Recognition and Normalization in Clinical Notes for SemEval-2014 Task 7. SemEval@COLING Jitendra Jonnagaddala, Manish Kumar, Hong-Jie Dai, Enny Rachmani, Chien-Yeh Hsu
2013	J	`jnl`	T-HOD: a literature-based candidate gene database for hypertension, obesity and diabetes. Database J. Biol. Databases Curation Hong-Jie Dai, Chi-Yang Wu, Richard Tzong-Han Tsai, Wen-Harn Pan, Wen-Lian Hsu
2013	J	`jnl`	TEMPTING system: A hybrid method of rule and machine learning for temporal relation extraction in patient discharge summaries. J. Biomed. Informatics Yung-Chun Chang, Hong-Jie Dai, Johnny Chi-Yang Wu, Jian-Ming Chen, Richard Tzong-Han Tsai, Wen-Lian Hsu
2012	J	`jnl`	Coreference resolution of medical concepts in discharge summaries by exploiting contextual information. J. Am. Medical Informatics Assoc. Hong-Jie Dai, Chun-Yu Chen, Chi-Yang Wu, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu
2011	A*	`conf`	Enhancing Search Results with Semantic Annotation Using Augmented Browsing. IJCAI Hong-Jie Dai, Wei-Chi Tsai, Richard Tzong-Han Tsai, Wen-Lian Hsu
2011	B	`conf`	Entity Disambiguation Using a Markov-Logic Network. IJCNLP Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu
2011	J	`jnl`	Integration of gene normalization stages and co-reference resolution using a Markov logic network. Bioinform. Hong-Jie Dai, Yen-Ching Chang, Richard Tzong-Han Tsai, Wen-Lian Hsu
2011	J	`jnl`	MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature. BMC Bioinform. Yu-Ching Fang, Po-Ting Lai, Hong-Jie Dai, Wen-Lian Hsu
2011	J	`jnl`	The gene normalization task in BioCreative III. BMC Bioinform. Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin M. Livingston, W. John Wilbur
2010	—	`conf`	Global Ranking via Data Fusion. COLING (Posters) Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu
2010	J	`jnl`	Multistage Gene Normalization and SVM-Based Ranking for Protein Interactor Extraction in Full-Text Articles. IEEE ACM Trans. Comput. Biol. Bioinform. Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai
2009	J	`jnl`	A supervised learning approach to biological question answering. Integr. Comput. Aided Eng. Ryan T. K. Lin, Justin Liang-Te Chiu, Hong-Jie Dai, Richard Tzong-Han Tsai, Min-Yuh Day, Wen-Lian Hsu
2009	J	`jnl`	HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features. BMC Bioinform. Richard Tzong-Han Tsai, Po-Ting Lai, Hong-Jie Dai, Chi-Hsin Huang, Yue-Yang Bow, Yen-Ching Chang, Wen-Harn Pan, Wen-Lian Hsu
2009	J	`jnl`	New Challenges for Biological Text-Mining in the Next Decade. J. Comput. Sci. Technol. Hong-Jie Dai, Yen-Ching Chang, Richard Tzong-Han Tsai, Wen-Lian Hsu
2009	J	`jnl`	PubMed-EX: a web browser extension to enhance PubMed search with text mining features. Bioinform. Richard Tzong-Han Tsai, Hong-Jie Dai, Po-Ting Lai, Chi-Hsin Huang
2009	Misc	`conf`	Using Contextual Information to Clarify Gene Normalization Ambiguity. IRI Po-Ting Lai, Yue-Yang Bow, Chi-Hsin Huang, Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu
2009	J	`jnl`	Using conditional random fields for result identification in biomedical abstracts. Integr. Comput. Aided Eng. Ryan T. K. Lin, Hong-Jie Dai, Yue-Yang Bow, Justin Liang-Te Chiu, Richard Tzong-Han Tsai
2008	—	`conf`	A Survey of State of the Art Biomedical Text Mining Techniques for Semantic Analysis. SUTC Hong-Jie Dai, Chi-Hsin Huang, Jaimie Yi-Wen Lin, Pei-Hsuan Chou, Richard Tzong-Han Tsai, Wen-Lian Hsu
2008	J	`jnl`	BIOSMILE web search: a web application for annotating biomedical entities and relations. Nucleic Acids Res. Hong-Jie Dai, Chi-Hsin Huang, Ryan T. K. Lin, Richard Tzong-Han Tsai, Wen-Lian Hsu
2008	Misc	`conf`	Biological question answering with syntactic and semantic feature matching and an improved mean reciprocal ranking measurement. IRI Ryan T. K. Lin, Justin Liang-Te Chiu, Hong-Jie Dai, Min-Yuh Day, Richard Tzong-Han Tsai, Wen-Lian Hsu
2008	J	`jnl`	Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles. BMC Bioinform. Richard Tzong-Han Tsai, Hsi-Chuan Hung, Hong-Jie Dai, Yi-Wen Lin, Wen-Lian Hsu
2008	Misc	`conf`	Result identification for biomedical abstracts using Conditional Random Fields. IRI Ryan T. K. Lin, Hong-Jie Dai, Yue-Yang Bow, Min-Yuh Day, Richard Tzong-Han Tsai, Wen-Lian Hsu
2008	J	`jnl`	Semi-automatic conversion of BioProp semantic annotation to PASBio annotation. BMC Bioinform. Richard Tzong-Han Tsai, Hong-Jie Dai, Chi-Hsin Huang, Wen-Lian Hsu
2007	Misc	`conf`	BESearch: A Supervised Learning Approach to Search for Molecular Event Participants. IRI Richard Tzong-Han Tsai, Hong-Jie Dai, Hsi-Chuan Hung, Ryan T. K. Lin, Wen-Chi Chou, Ying-Shan Su, Min-Yuh Day, Wen-Lian Hsu
2007	J	`jnl`	BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features. BMC Bioinform. Richard Tzong-Han Tsai, Wen-Chi Chou, Ying-Shan Su, Yu-Chun Lin, Cheng-Lung Sung, Hong-Jie Dai, Irene Tzu-Hsuan Yeh, Wei Ku, Ting-Yi Sung, Wen-Lian Hsu
2007	A	`conf`	Exploiting unlabeled internal data in conditional random fields to reduce word segmentation errors for Chinese texts. INTERSPEECH Richard Tzong-Han Tsai, Hsi-Chuan Hung, Hong-Jie Dai, Wen-Lian Hsu
2007	—	`conf`	Protein-Protein Interaction Abstract Identification with Contextual Bag of Words. LBM (Short Papers) Richard Tzong-Han Tsai, Hsieh-Chuan Hung, Hong-Jie Dai, Yi-Wen Lin
2006	Misc	`conf`	Chinese word segmentation with minimal linguistic knowledge: An improved conditional random fields coupled with character clustering and automatically discovered template matching. IRI Richard Tzong-Han Tsai, Hong-Jie Dai, Hsieh-Chuan Hung, Cheng-Lung Sung, Min-Yuh Day, Wen-Lian Hsu
2006	J	`jnl`	NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition. BMC Bioinform. Richard Tzong-Han Tsai, Cheng-Lung Sung, Hong-Jie Dai, Hsieh-Chuan Hung, Ting-Yi Sung, Wen-Lian Hsu
2006	—	`conf`	On Closed Task of Chinese Word Segmentation: An Improved CRF Model Coupled with Character Clustering and Automatically Generated Template Matching. SIGHAN@COLING/ACL Richard Tzong-Han Tsai, Hsieh-Chuan Hung, Cheng-Lung Sung, Hong-Jie Dai, Wen-Lian Hsu