Hong-Dong Li

43 papers A* 1A 1Journal 29Unranked 12
YearRankTypeTitle / Venue / Authors
2026 J jnl
VC-Bench: Pioneering the Video Connecting Benchmark with a Dataset and Evaluation Metrics.
CoRR
Zhiyu Yin, Zhipeng Liu, Kehai Chen, Lemao Liu, Jin Liu, Hong-Dong Li, Yang Xiang, Min Zhang
2025 A* conf
A Survey on the Feedback Mechanism of LLM-based AI Agents.
IJCAI
Zhipeng Liu, Xuefeng Bai, Kehai Chen, Xinyang Chen, Xiucheng Li, Yang Xiang, Jin Liu, Hong-Dong Li, Yaowei Wang, Liqiang Nie, Min Zhang
2025 J jnl
CrossIsoFun: predicting isoform functions using the integration of multi-omics data.
Bioinform.
Yiwei Liu, Hong-Dong Li, Jianxin Wang
2025 J jnl
Inspired by pathogenic mechanisms: A novel gradual multi-modal fusion framework for mild cognitive impairment diagnosis.
Neural Networks
Xu Tian, Hong-Dong Li, Hanhe Lin, Chao Li, Yu-Ping Wang, Harrison X. Bai, Wei Lan, Jin Liu
2025 J jnl
LIMO-GCN: a linear model-integrated graph convolutional network for predicting Alzheimer disease genes.
Briefings Bioinform.
Cui-Xiang Lin, Hong-Dong Li, Jianxin Wang
2025 — conf
MFC-GCN: Identifying Disease Driver Genes via Graph Neural Networks and Multi-Network Fusion Contrastive Learning.
BIBM
Hao Wang, Cui-Xiang Lin, Si-Han Zhu, Hong-Dong Li
2024 J jnl
Graph-Based Fusion of Imaging, Genetic and Clinical Data for Degenerative Disease Diagnosis.
IEEE ACM Trans. Comput. Biol. Bioinform.
Rui Guo, Xu Tian, Hanhe Lin, Stephen J. McKenna, Hong-Dong Li, Fei Guo, Jin Liu
2024 J jnl
Identifying new cancer genes based on the integration of annotated gene sets via hypergraph neural networks.
Bioinform.
Chao Deng, Hong-Dong Li, Li-Shen Zhang, Yiwei Liu, Yaohang Li, Jianxin Wang
2024 — conf
MVFormer: Predicting the pathogenicity of missense variants using gated transformers.
BCB
Zongxuan Li, Wenkui Huang, Hong-Dong Li
2024 J jnl
Multi-Task Learning for Alzheimer's Disease Diagnosis and Mini-Mental State Examination Score Prediction.
Big Data Min. Anal.
Jin Liu, Xu Tian, Hanhe Lin, Hong-Dong Li, Yi Pan
2024 A conf
Pre-trained Feature Fusion and Matching for Mild Cognitive Impairment Detection.
INTERSPEECH
Junwen Duan, Fangyuan Wei, Hong-Dong Li, Jin Liu
2023 J jnl
A Comparison of Topologically Associating Domain Callers Based on Hi-C Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Kun Liu, Hong-Dong Li, Yaohang Li, Jun Wang, Jianxin Wang
2023 J jnl
A Gene Set-Integrated Approach for Predicting Disease-Associated Genes.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hong-Dong Li, Chao Deng, Xiao-Qi Zhang, Cui-Xiang Lin
2023 J jnl
CellBRF: a feature selection method for single-cell clustering using cell balance and random forest.
Bioinform.
Yunpei Xu, Hong-Dong Li, Cui-Xiang Lin, Ruiqing Zheng, Yaohang Li, Jinhui Xu, Jianxin Wang
2023 J jnl
Computational approaches for detecting disease-associated alternative splicing events.
Briefings Bioinform.
Jiashu Liu, Cui-Xiang Lin, Xiaoqi Zhang, Zongxuan Li, Wenkui Huang, Jin Liu, Yuanfang Guan, Hong-Dong Li
2023 J jnl
DeepRetention: A Deep Learning Approach for Intron Retention Detection.
Big Data Min. Anal.
Zhenpeng Wu, Jiantao Zheng, Jiashu Liu, Cuixiang Lin, Hong-Dong Li
2023 J jnl
FEED: a feature selection method based on gene expression decomposition for single cell clustering.
Briefings Bioinform.
Chao Zhang, Zhi-Wei Duan, Yun-Pei Xu, Jin Liu, Hong-Dong Li
2023 J jnl
IsoCell: An Approach to Enhance Single Cell Clustering by Integrating Isoform-Level Expression Through Orthogonal Projection.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yingyi Liu, Hong-Dong Li, Yunpei Xu, Yi-Wei Liu, Xiaoqing Peng, Jianxin Wang
2023 J jnl
IsoFrog: a reversible jump Markov Chain Monte Carlo feature selection-based method for predicting isoform functions.
Bioinform.
Yiwei Liu, Changhuo Yang, Hong-Dong Li, Jianxin Wang
2023 — conf
Training Methods of Innovative Talents in Medical Imaging Informatics Under the Background of New Engineering.
ICCSE (3)
Jin Liu, Qian Bi, Ping Zhong, Hong-Dong Li, Fei Guo, Junwen Duan
2022 J jnl
A comparison of computational approaches for intron retention detection.
Big Data Min. Anal.
Jiantao Zheng, Cuixiang Lin, Zhenpeng Wu, Hong-Dong Li
2022 J jnl
AlzCode: a platform for multiview analysis of genes related to Alzheimer's disease.
Bioinform.
Cui-Xiang Lin, Hong-Dong Li, Chao Deng, Shannon Erhardt, Jun Wang, Xiaoqing Peng, Jianxin Wang
2022 — conf
An Alzheimer's disease gene prediction method based on ensemble of genome-wide association study summary statistics.
BIBM
Jia-Hao Song, Cui-Xiang Lin, Hong-Dong Li
2022 J jnl
An integrated brain-specific network identifies genes associated with neuropathologic and clinical traits of Alzheimer's disease.
Briefings Bioinform.
Cui-Xiang Lin, Hong-Dong Li, Chao Deng, Weisheng Liu, Shannon Erhardt, Fang-Xiang Wu, Xing-Ming Zhao, Yuanfang Guan, Jun Wang, Daifeng Wang, Bin Hu, Jianxin Wang
2022 J jnl
GTFtools: a software package for analyzing various features of gene models.
Bioinform.
Hong-Dong Li, Cui-Xiang Lin, Jiantao Zheng
2022 — conf
KL-RF: Predicting disease-gene associations with model fusion.
BIBM
Hai Liu, Hong-Dong Li
2022 J jnl
TissueNexus: a database of human tissue functional gene networks built with a large compendium of curated RNA-seq data.
Nucleic Acids Res.
Cui-Xiang Lin, Hong-Dong Li, Chao Deng, Yuanfang Guan, Jianxin Wang
2021 J jnl
A Gene Rank Based Approach for Single Cell Similarity Assessment and Clustering.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yunpei Xu, Hong-Dong Li, Yi Pan, Feng Luo, Fang-Xiang Wu, Jianxin Wang
2021 — conf
GraphIsoFun: a graph neural network based approach for splice isoform function prediction.
BIBM
Shuo Zhang, Changhuo Yang, Hong-Dong Li, Jianxin Wang
2021 J jnl
Identifying the tissues-of-origin of circulating cell-free DNAs is a promising way in noninvasive diagnostics.
Briefings Bioinform.
Xiaoqing Peng, Hong-Dong Li, Fang-Xiang Wu, Jianxin Wang
2021 — conf
Improving the Prediction of Disease-associated Genes by Integrating Annotated Gene Sets.
BIBM
Chao Deng, Cui-Xiang Lin, Hong-Dong Li
2021 J jnl
IsoResolve: predicting splice isoform functions by integrating gene and isoform-level features with domain adaptation.
Bioinform.
Hong-Dong Li, Changhuo Yang, Zhimin Zhang, Mengyun Yang, Fang-Xiang Wu, Gilbert S. Omenn, Jianxin Wang
2021 J jnl
REBET: a method to determine the number of cell clusters based on batch effect removal.
Briefings Bioinform.
Zhao-Yu Fang, Cui-Xiang Lin, Yun-Pei Xu, Hong-Dong Li, Qing-Song Xu
2020 J jnl
A network enhancement-based method for clustering of single cell RNA-seq data.
Int. J. Data Min. Bioinform.
Xiaoshu Zhu, Lilu Guo, Rongyuan Li, Yunpei Xu, Fang-Xiang Wu, Xiaoqing Peng, Hong-Dong Li
2020 J jnl
ClusterMine: A knowledge-integrated clustering approach based on expression profiles of gene sets.
J. Bioinform. Comput. Biol.
Hong-Dong Li, Yunpei Xu, Xiaoshu Zhu, Quan Liu, Gilbert S. Omenn, Jianxin Wang
2020 — conf
Identification of Disease-Associated Genes Based on Differential Intron Retention.
BIBM
Zhenpeng Wu, Jiantao Zheng, Hong-Dong Li
2020 — conf
Joint Learning of Primary and Secondary Labels based on Multi-scale Representation for Alzheimer's Disease Diagnosis.
BIBM
Hong-Dong Li, Rui Guo, Junjian Li, Jianxin Wang, Yi Pan, Jin Liu
2019 — conf
A Global Similarity Learning for Clustering of Single-Cell RNA-Seq Data.
BIBM
Xiaoshu Zhu, Lilu Guo, Yunpei Xu, Hong-Dong Li, Xingyu Liao, Fang-Xiang Wu, Xiaoqing Peng
2019 J jnl
BaiHui: cross-species brain-specific network built with hundreds of hand-curated datasets.
Bioinform.
Hong-Dong Li, Tianjian Bai, Erin Sandford, Margit Burmeister, Yuanfang Guan
2018 — conf
BioRank: A Similarity Assessment Method for Single Cell Clustering.
BIBM
Yunpei Xu, Hong-Dong Li, Yi Pan, Feng Luo, Jianxin Wang
2017 — conf
An interpretable model for predicting side effects of analgesics for osteoarthritis.
BIBM
Liangliang Liu, Jianxin Wang, Min Li, Fang-Xiang Wu, Hong-Dong Li, Ying Yu, Zhihui Fei
2011 J jnl
Recipe for Uncovering Predictive Genes Using Support Vector Machines Based on Model Population Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hong-Dong Li, Yi-Zeng Liang, Qing-Song Xu, Dong-Sheng Cao, Bin-Bin Tan, Bai-Chuan Deng, Chen-Chen Lin
2010 J jnl
A new strategy of outlier detection for QSAR/QSPR.
J. Comput. Chem.
Dong-Sheng Cao, Yi-Zeng Liang, Qing-Song Xu, Hong-Dong Li, Xian Chen