Hojung Nam

37 papers A 1Journal 28Unranked 8
YearRankTypeTitle / Venue / Authors
2026 J jnl
DeepRNA-DTI: a deep learning approach for RNA-compound interaction prediction with binding site interpretability.
J. Cheminformatics
Haelee Bae, Hojung Nam
2025 J jnl
AI-guided discovery and optimization of antimicrobial peptides through species-aware language model.
Briefings Bioinform.
Daehun Bae, Minsang Kim, Jiwon Seo, Hojung Nam
2025 J jnl
DD-PRiSM: a deep learning framework for decomposition and prediction of synergistic drug combinations.
Briefings Bioinform.
Iljung Jin, Songyeon Lee, Martin Schmuhalek, Hojung Nam
2025 J jnl
Enhancing multi-task in vivo toxicity prediction via integrated knowledge transfer of chemical knowledge and in vitro toxicity information.
J. Cheminformatics
Minsu Park, Yewon Shin, Hyunho Kim, Hojung Nam
2025 J jnl
KG-SLomics: Synthetic Lethality Prediction Using Knowledge Graph and Cancer Type-Specific Multiomics Integrated Graph Neural Network.
IEEE Trans. Comput. Biol. Bioinform.
Songyeon Lee, Hojung Nam
2023 J jnl
LOGICS: Learning optimal generative distribution for designing de novo chemical structures.
J. Cheminformatics
Bongsung Bae, Haelee Bae, Hojung Nam
2022 J jnl
BayeshERG: a robust, reliable and interpretable deep learning model for predicting hERG channel blockers.
Briefings Bioinform.
Hyunho Kim, Minsu Park, Ingoo Lee, Hojung Nam
2022 J jnl
DeSIDE-DDI: interpretable prediction of drug-drug interactions using drug-induced gene expressions.
J. Cheminformatics
Eunyoung Kim, Hojung Nam
2022 J jnl
Infusing Linguistic Knowledge of SMILES into Chemical Language Models.
CoRR
Ingoo Lee, Hojung Nam
2022 J jnl
Sequence-based prediction of protein binding regions and drug-target interactions.
J. Cheminformatics
Ingoo Lee, Hojung Nam
2021 J jnl
HiDRA: Hierarchical Network for Drug Response Prediction with Attention.
J. Chem. Inf. Model.
Iljung Jin, Hojung Nam
2020 A conf
DTMBIO 2020: The Fourteenth International Workshop on Data and Text Mining in Biomedical Informatics.
CIKM
Hyojung Paik, Sunyong Yoo, Hojung Nam, Mark Stevenson, Albert No
2020 J jnl
Prediction model construction of mouse stem cell pluripotency using CpG and non-CpG DNA methylation markers.
BMC Bioinform.
Soobok Joe, Hojung Nam
2020 J jnl
hERG-Att: Self-attention-based deep neural network for predicting hERG blockers.
Comput. Biol. Chem.
Hyunho Kim, Hojung Nam
2019 J jnl
DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences.
PLoS Comput. Biol.
Ingoo Lee, Jongsoo Keum, Hojung Nam
2019 J jnl
Drug repositioning of herbal compounds via a machine-learning approach.
BMC Bioinform.
Eunyoung Kim, A.-Sol Choi, Hojung Nam
2018 J jnl
A Data-Driven Approach for Identifying Medicinal Combinations of Natural Products.
IEEE Access
Sunyong Yoo, Suhyun Ha, Moonshik Shin, Kyungrin Noh, Hojung Nam, Doheon Lee
2018 J jnl
DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences.
CoRR
Ingoo Lee, Jongsoo Keum, Hojung Nam
2018 J jnl
Identification of drug-target interaction by a random walk with restart method on an interactome network.
BMC Bioinform.
Ingoo Lee, Hojung Nam
2018 J jnl
Predicting the Absorption Potential of Chemical Compounds Through a Deep Learning Approach.
IEEE ACM Trans. Comput. Biol. Bioinform.
Moonshik Shin, Donjin Jang, Hojung Nam, Kwang Hyung Lee, Doheon Lee
2017 — conf
In Silico Simulation of Signal Cascades in Biomedical Networks Based on the Production Rule System.
ISBRA
Sangwoo Kim, Hojung Nam
2017 J jnl
Prediction models for drug-induced hepatotoxicity by using weighted molecular fingerprints.
BMC Bioinform.
Eunyoung Kim, Hojung Nam
2016 J jnl
Prediction of compound-target interactions of natural products using large-scale drug and protein information.
BMC Bioinform.
Jongsoo Keum, Sunyong Yoo, Doheon Lee, Hojung Nam
2016 J jnl
Prognostic factor analysis for breast cancer using gene expression profiles.
BMC Medical Informatics Decis. Mak.
Soobok Joe, Hojung Nam
2015 J jnl
Identification of genomic features in the classification of loss- and gain-of-function mutation.
BMC Medical Informatics Decis. Mak.
Seunghwan Jung, Sejoon Lee, Sangwoo Kim, Hojung Nam
2015 — conf
Prediction of Compound-Target Interactions of Natural Products Using Large-scale Drug and Protein Information.
DTMBIO@CIKM
Jongsoo Keum, Sunyong Yoo, Hojung Nam
2015 — conf
Prognostic Factor Analysis for Breast Cancer Using Gene Expression Profiles.
DTMBIO@CIKM
Soobok Joe, Hojung Nam
2015 J jnl
SoloDel: a probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data.
Bioinform.
Junho Kim, Sanghyeon Kim, Hojung Nam, Sangwoo Kim, Doheon Lee
2015 — conf
Toxicity Predictions using Compound Descriptions.
DTMBIO@CIKM
Eunyoung Kim, Sangwoo Kim, Suhyun Ha, Hojung Nam
2014 J jnl
A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks.
PLoS Comput. Biol.
Hojung Nam, Miguel Campodonico, Aarash Bordbar, Daniel R. Hyduke, Sangwoo Kim, Daniel C. Zielinski, Bernhard O. Palsson
2014 — conf
Identification of Genomic Features in the Classification of Loss- and Gain-of-Function Mutation: [Extended Abstract].
DTMBIO@CIKM
Seunghwan Jung, Sejoon Lee, Sangwoo Kim, Hojung Nam
2014 — conf
Identification of a Specific Base Sequence of Pathogenic E. Coli through a Genomic Analysis.
DTMBIO@CIKM
Soobok Joe, Hojung Nam
2014 — conf
Integrative Database for Exploring Compound Combinations of Natural Products for Medical Effects.
DTMBIO@CIKM
Suhyun Ha, Sunyong Yoo, Moonshik Shin, Jin Sook Kwak, Oran Kwon, Min Chang Choi, Keon Wook Kang, Hojung Nam, Doheon Lee
2011 J jnl
Exploring molecular links between lymph node invasion and cancer prognosis in human breast cancer.
BMC Syst. Biol.
Sangwoo Kim, Hojung Nam, Doheon Lee
2009 J jnl
Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification.
Bioinform.
Hojung Nam, Bong Chul Chung, Younghoon Kim, Ki Young Lee, Doheon Lee
2009 J jnl
Identification of temporal association rules from time-series microarray data sets.
BMC Bioinform.
Hojung Nam, Ki Young Lee, Doheon Lee
2008 — conf
Identification of temporal association rules from time-series microarray data set: temporal association rules.
DTMBIO
Hojung Nam, Ki Young Lee, Doheon Lee