Hisanori Kiryu

22 papers Journal 22
YearRankTypeTitle / Venue / Authors
2025 J jnl
CoSMIM: a covariance-based multi-scale framework for integrated spatial microenvironment analysis.
Briefings Bioinform.
Bairui Du, Hisanori Kiryu
2022 J jnl
MODEC: an unsupervised clustering method integrating omics data for identifying cancer subtypes.
Briefings Bioinform.
Yanting Zhang, Hisanori Kiryu
2020 J jnl
Estimation of population genetic parameters using an EM algorithm and sequence data from experimental evolution populations.
Bioinform.
Yasuhiro Kojima, Hirotaka Matsumoto, Hisanori Kiryu
2019 J jnl
TMRS: an algorithm for computing the time to the most recent substitution event from a multiple alignment column.
Algorithms Mol. Biol.
Hisanori Kiryu, Yuto Ichikawa, Yasuhiro Kojima
2019 J jnl
reactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure prediction.
BMC Bioinform.
Risa Karakida Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese
2017 J jnl
SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation.
Bioinform.
Hirotaka Matsumoto, Hisanori Kiryu, Chikara Furusawa, Minoru S. H. Ko, Shigeru B. H. Ko, Norio Gouda, Tetsutaro Hayashi, Itoshi Nikaido
2016 J jnl
Parallel computation of genome-scale RNA secondary structure to detect structural constraints on human genome.
BMC Bioinform.
Risa Karakida Kawaguchi, Hisanori Kiryu
2016 J jnl
Rtools: a web server for various secondary structural analyses on single RNA sequences.
Nucleic Acids Res.
Michiaki Hamada, Yukiteru Ono, Hisanori Kiryu, Kengo Sato, Yuki Kato, Tsukasa Fukunaga, Ryota Mori, Kiyoshi Asai
2016 J jnl
SCOUP: a probabilistic model based on the Ornstein-Uhlenbeck process to analyze single-cell expression data during differentiation.
BMC Bioinform.
Hirotaka Matsumoto, Hisanori Kiryu
2013 J jnl
Generalized Centroid Estimators in Bioinformatics
CoRR
Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, Kiyoshi Asai
2012 J jnl
Rchange: algorithms for computing energy changes of RNA secondary structures in response to base mutations.
Bioinform.
Hisanori Kiryu, Kiyoshi Asai
2011 J jnl
A detailed investigation of accessibilities around target sites of siRNAs and miRNAs.
Bioinform.
Hisanori Kiryu, Goro Terai, Osamu Imamura, Hiroyuki Yoneyama, Kenji Suzuki, Kiyoshi Asai
2011 J jnl
Sufficient statistics and expectation maximization algorithms in phylogenetic tree models.
Bioinform.
Hisanori Kiryu
2009 J jnl
CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
Bioinform.
Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai
2009 J jnl
Prediction of RNA secondary structure using generalized centroid estimators.
Bioinform.
Michiaki Hamada, Hisanori Kiryu, Kengo Sato, Toutai Mituyama, Kiyoshi Asai
2009 J jnl
Predictions of RNA secondary structure by combining homologous sequence information.
Bioinform.
Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai
2008 J jnl
A fast structural multiple alignment method for long RNA sequences.
BMC Bioinform.
Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
2008 J jnl
Rfold: an exact algorithm for computing local base pairing probabilities.
Bioinform.
Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
2008 J jnl
Software.ncrna.org: web servers for analyses of RNA sequences.
Nucleic Acids Res.
Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama
2007 J jnl
Murlet: a practical multiple alignment tool for structural RNA sequences.
Bioinform.
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, Kiyoshi Asai
2007 J jnl
Robust prediction of consensus secondary structures using averaged base pairing probability matrices.
Bioinform.
Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
2005 J jnl
Extracting relations between promoter sequences and their strengths from microarray data.
Bioinform.
Hisanori Kiryu, Taku Oshima, Kiyoshi Asai