Hiroyuki Toh

22 papers Journal 19Unranked 2
YearRankTypeTitle / Venue / Authors
2019 — ch.
Phylogenetic Footprinting.
Encyclopedia of Bioinformatics and Computational Biology (2)
Hiroyuki Toh
2018 — conf
Implementing LOD Surfer as a Search System for the Annotation of Multiple Protein Sequence Alignment.
JIST
Atsuko Yamaguchi, Hiroyuki Toh
2016 J jnl
Profile comparison revealed deviation from structural constraint at the positively selected sites.
Biosyst.
Hiroyuki Oda, Motonori Ota, Hiroyuki Toh
2011 J jnl
DROP: an SVM domain linker predictor trained with optimal features selected by random forest.
Bioinform.
Teppei Ebina, Hiroyuki Toh, Yutaka Kuroda
2010 J jnl
A comparative study of conservation and variation scores.
BMC Bioinform.
Fredrik Johansson, Hiroyuki Toh
2010 J jnl
Parallelization of the MAFFT multiple sequence alignment program.
Bioinform.
Kazutaka Katoh, Hiroyuki Toh
2010 J jnl
Relative von Neumann Entropy for Evaluating amino acid conservation.
J. Bioinform. Comput. Biol.
Fredrik Johansson, Hiroyuki Toh
2008 J jnl
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.
BMC Bioinform.
Kazutaka Katoh, Hiroyuki Toh
2008 J jnl
Recent developments in the MAFFT multiple sequence alignment program.
Briefings Bioinform.
Kazutaka Katoh, Hiroyuki Toh
2007 J jnl
ASH structure alignment package: Sensitivity and selectivity in domain classification.
BMC Bioinform.
Daron M. Standley, Hiroyuki Toh, Haruki Nakamura
2007 — conf
Inference of Protein-Protein Interactions by Using Co-evolutionary Information.
AB
Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
2007 J jnl
PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences.
Bioinform.
Kazutaka Katoh, Hiroyuki Toh
2006 J jnl
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.
Bioinform.
Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
2005 J jnl
ASIAN: a web server for inferring a regulatory network framework from gene expression profiles.
Nucleic Acids Res.
Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Hiroyuki Toh, Katsuhisa Horimoto
2005 J jnl
GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures.
BMC Bioinform.
Daron M. Standley, Hiroyuki Toh, Haruki Nakamura
2005 J jnl
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.
Bioinform.
Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh
2004 J jnl
ASIAN: a website for network inference.
Bioinform.
Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Masaki Fumoto, Akira Imaizumi, Nobuyoshi Sugaya, Hiroo Murakami, Makihiko Sato, Hiroyuki Toh, Katsuhisa Horimoto
2003 J jnl
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling.
Signal Process.
Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto
2002 J jnl
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling.
Bioinform.
Hiroyuki Toh, Katsuhisa Horimoto
2001 J jnl
Statistical estimation of cluster boundaries in gene expression profile data.
Bioinform.
Katsuhisa Horimoto, Hiroyuki Toh
1998 J jnl
A method for comparing circular genomes from gene locations: application to mitochondrial genomes.
Bioinform.
Katsuhisa Horimoto, Mikita Suyama, Hiroyuki Toh, Kentaro Mori, Jinya Otsuka
1997 J jnl
Introduction of a distance cut-off into structural alignment by the double dynamic programming algorithm.
Comput. Appl. Biosci.
Hiroyuki Toh