Hiroyuki Kurata

29 papers B 2C 3Journal 22Unranked 2

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Stack-DHUpred: Advancing the accuracy of dihydrouridine modification sites detection via stacking approach. Comput. Biol. Medicine Md. Harun-Or-Roshid, Kazuhiro Maeda, Le Thi Phan, Balachandran Manavalan, Hiroyuki Kurata
2022	J	`jnl`	BERT6mA: prediction of DNA N6-methyladenine site using deep learning-based approaches. Briefings Bioinform. Sho Tsukiyama, Md. Mehedi Hasan, Hong-Wen Deng, Hiroyuki Kurata
2022	J	`jnl`	MLAGO: machine learning-aided global optimization for Michaelis constant estimation of kinetic modeling. BMC Bioinform. Kazuhiro Maeda, Aoi Hatae, Yukie Sakai, Fred C. Boogerd, Hiroyuki Kurata
2022	J	`jnl`	iACVP: markedly enhanced identification of anti-coronavirus peptides using a dataset-specific word2vec model. Briefings Bioinform. Hiroyuki Kurata, Sho Tsukiyama, Balachandran Manavalan
2021	J	`jnl`	Fabrication and Characterisation of Organic EL Devices in the Presence of Cyclodextrin as an Interlayer. Sensors Michihiro Hara, Takao Umeda, Hiroyuki Kurata
2021	J	`jnl`	IRC-Fuse: improved and robust prediction of redox-sensitive cysteine by fusing of multiple feature representations. J. Comput. Aided Mol. Des. Md. Mehedi Hasan, Md. Ashad Alam, Watshara Shoombuatong, Hiroyuki Kurata
2021	J	`jnl`	LSTM-PHV: prediction of human-virus protein-protein interactions by LSTM with word2vec. Briefings Bioinform. Sho Tsukiyama, Md. Mehedi Hasan, Satoshi Fujii, Hiroyuki Kurata
2021	J	`jnl`	Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework. Briefings Bioinform. Md. Mehedi Hasan, Shaherin Basith, Mst. Shamima Khatun, Gwang Lee, Balachandran Manavalan, Hiroyuki Kurata
2021	J	`jnl`	NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning. Briefings Bioinform. Md. Mehedi Hasan, Md. Ashad Alam, Watshara Shoombuatong, Hong-Wen Deng, Balachandran Manavalan, Hiroyuki Kurata
2020	J	`jnl`	ProIn-Fuse: improved and robust prediction of proinflammatory peptides by fusing of multiple feature representations. J. Comput. Aided Mol. Des. Mst. Shamima Khatun, Md. Mehedi Hasan, Watshara Shoombuatong, Hiroyuki Kurata
2020	J	`jnl`	iLBE for Computational Identification of Linear B-cell Epitopes by Integrating Sequence and Evolutionary Features. Genom. Proteom. Bioinform. Md. Mehedi Hasan, Mst. Shamima Khatun, Hiroyuki Kurata
2019	J	`jnl`	Improvement of the memory function of a mutual repression network in a stochastic environment by negative autoregulation. BMC Bioinform. A. B. M. Shamim Ul Hasan, Hiroyuki Kurata, Sebastian Pechmann
2018	C	`conf`	SIPMA: A Systematic Identification of Protein-Protein Interactions in Zea mays Using Autocorrelation Features in a Machine-Learning Framework. BIBE Mst. Shamima Khatun, Md. Mehedi Hasan, Md. Nurul Haque Mollah, Hiroyuki Kurata
2018	C	`conf`	iLMS, Computational Identification of Lysine-Malonylation Sites by Combining Multiple Sequence Features. BIBE Md. Mehedi Hasan, Hiroyuki Kurata
2014	J	`jnl`	Analytical study of robustness of a negative feedback oscillator by multiparameter sensitivity. BMC Syst. Biol. Kazuhiro Maeda, Hiroyuki Kurata
2014	J	`jnl`	BioFNet: biological functional network database for analysis and synthesis of biological systems. Briefings Bioinform. Hiroyuki Kurata, Kazuhiro Maeda, Toshikazu Onaka, Takenori Takata
2013	J	`jnl`	Multi-Dimensional Shift Multiplexing Technique with Spherical Reference Waves. IEICE Trans. Electron. Shuhei Yoshida, Takaaki Matsubara, Hiroyuki Kurata, Shuma Horiuchi, Manabu Yamamoto
2012	J	`jnl`	Biological Design Principles of Complex Feedback Modules in the Artif. Life Koichi Masaki, Kazuhiro Maeda, Hiroyuki Kurata
2012	J	`jnl`	CADLIVE optimizer: web-based parameter estimation for dynamic models. Source Code Biol. Medicine Kentaro Inoue, Kazuhiro Maeda, Yuki Kato, Shinpei Tonami, Shogo Takagi, Hiroyuki Kurata
2009	J	`jnl`	Genetic modification of flux for flux prediction of mutants. Bioinform. Quanyu Zhao, Hiroyuki Kurata
2009	J	`jnl`	Two-phase Search (TPS) Method: Nonbiased and High-speed Parameter Search for Dynamic Models of Biochemical Networks. Inf. Media Technol. Kazuhiro Maeda, Hiroyuki Kurata
2007	J	`jnl`	Integration of enzyme activities into metabolic flux distributions by elementary mode analysis. BMC Syst. Biol. Hiroyuki Kurata, Quanyu Zhao, Ryuichi Okuda, Kazuyuki Shimizu
2006	B	`conf`	Effective and Fast Optimization for a Dynamic Model of the Drosophila Circadian Oscillator. SMC Tanaka Shin, Hiroyuki Kurata, Takeshi Ohashi
2006	J	`jnl`	Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System. PLoS Comput. Biol. Hiroyuki Kurata, Hana El-Samad, Rei Iwasaki, Hisao Ohtake, John C. Doyle, Irina Grigorova, Carol A. Gross, Mustafa Khammash
2005	J	`jnl`	A grid layout algorithm for automatic drawing of biochemical networks. Bioinform. Weijiang Li, Hiroyuki Kurata
2005	—	`conf`	Reverse Engineering for a Dynamic Model of the Drosophila Circadia Oscillator. CIMCA/IAWTIC Tanaka Shin, Hiroyuki Kurata, Takeshi Ohashi
2005	B	`conf`	Survival ratio GA for two-evaluation problem in parameter tuning of heat shock response in E. coli. SMC Tanaka Shin, Hiroyuki Kurata, Takeshi Ohashi
2002	C	`conf`	Robustness analysis of the heat shock response in E. coli. ACC Hana El-Samad, Mustafa Khammash, Hiroyuki Kurata, John Doyle
2001	—	`conf`	Feedback regulation of the heat shock response in E. coli. CDC Hiroyuki Kurata, Hana El-Samad, Tau-Mu Yi, Mustafa Khammash, John Doyle