Hiroaki Iwata - RankMe

17 papers C 1Journal 15Unranked 1

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Chemical genomics language model toward reliable and explainable compound-protein interaction exploration. J. Cheminformatics Takuto Koyama, Hayato Tsumura, Ryunosuke Okita, Kimihiro Yamazaki, Aki Hasegawa, Keiko Imamura, Takashi Kato, Hiroaki Iwata, Ryosuke Kojima, Haruhisa Inoue, Shigeyuki Matsumoto, Yasushi Okuno
2026	J	`jnl`	Empowering federated learning for robust compound-protein interaction prediction across heterogeneous cross-pharma domains. J. Cheminformatics Takuto Koyama, Hiroaki Iwata, Ryosuke Kojima, Takao Otsuka, Aki Hasegawa, Seungeon Lee, Hiroshi Ueda, Toshiharu Morimoto, Ryoko Sasaki, Nao Torimoto, Sei Murakami, Manabu Tojo, Teruki Honma, Shigeyuki Matsumoto, Yasushi Okuno
2025	J	`jnl`	Improving ADME Prediction with Multitask Graph Neural Networks and Assessing Explainability in Lead Optimization. J. Chem. Inf. Model. Shoma Ito, Takuto Koyama, Shigeyuki Matsumoto, Ryosuke Kojima, Yuji Okamoto, Masataka Kuroda, Hitoshi Kawashima, Reiko Watanabe, Tomoki Yonezawa, Takaaki Sumiyoshi, Kazuyoshi Ikeda, Kenji Mizuguchi, Hiroaki Iwata, Yasushi Okuno
2025	J	`jnl`	kMoL: an open-source machine and federated learning library for drug discovery. J. Cheminformatics Romeo Cozac, Haris Hasic, Jun Jin Choong, Vincent Richard, Loic Beheshti, Cyrille Froehlich, Takuto Koyama, Shigeyuki Matsumoto, Ryosuke Kojima, Hiroaki Iwata, Aki Hasegawa, Takao Otsuka, Yasushi Okuno
2023	J	`jnl`	Improving Compound-Protein Interaction Prediction by Self-Training with Augmenting Negative Samples. J. Chem. Inf. Model. Takuto Koyama, Shigeyuki Matsumoto, Hiroaki Iwata, Ryosuke Kojima, Yasushi Okuno
2023	J	`jnl`	VGAE-MCTS: A New Molecular Generative Model Combining the Variational Graph Auto-Encoder and Monte Carlo Tree Search. J. Chem. Inf. Model. Hiroaki Iwata, Taichi Nakai, Takuto Koyama, Shigeyuki Matsumoto, Ryosuke Kojima, Yasushi Okuno
2022	J	`jnl`	Predicting Total Drug Clearance and Volumes of Distribution Using the Machine Learning-Mediated Multimodal Method through the Imputation of Various Nonclinical Data. J. Chem. Inf. Model. Hiroaki Iwata, Tatsuru Matsuo, Hideaki Mamada, Takahisa Motomura, Mayumi Matsushita, Takeshi Fujiwara, Kazuya Maeda, Koichi Handa
2021	J	`jnl`	Structure-Based de Novo Molecular Generator Combined with Artificial Intelligence and Docking Simulations. J. Chem. Inf. Model. Biao Ma, Kei Terayama, Shigeyuki Matsumoto, Yuta Isaka, Yoko Sasakura, Hiroaki Iwata, Mitsugu Araki, Yasushi Okuno
2020	J	`jnl`	kGCN: a graph-based deep learning framework for chemical structures. J. Cheminformatics Ryosuke Kojima, Shoichi Ishida, Masateru Ohta, Hiroaki Iwata, Teruki Honma, Yasushi Okuno
2018	J	`jnl`	Improving the Accuracy of Protein-Ligand Binding Mode Prediction Using a Molecular Dynamics-Based Pocket Generation Approach. J. Comput. Chem. Mitsugu Araki, Hiroaki Iwata, Biao Ma, Atsuto Fujita, Kei Terayama, Yukari Sagae, Fumie Ono, Koji Tsuda, Narutoshi Kamiya, Yasushi Okuno
2018	J	`jnl`	Machine learning accelerates MD-based binding pose prediction between ligands and proteins. Bioinform. Kei Terayama, Hiroaki Iwata, Mitsugu Araki, Yasushi Okuno, Koji Tsuda
2015	J	`jnl`	Large-Scale Prediction of Beneficial Drug Combinations Using Drug Efficacy and Target Profiles. J. Chem. Inf. Model. Hiroaki Iwata, Ryusuke Sawada, Sayaka Mizutani, Masaaki Kotera, Yoshihiro Yamanishi
2015	J	`jnl`	Systematic Drug Repositioning for a Wide Range of Diseases with Integrative Analyses of Phenotypic and Molecular Data. J. Chem. Inf. Model. Hiroaki Iwata, Ryusuke Sawada, Sayaka Mizutani, Yoshihiro Yamanishi
2015	J	`jnl`	Target-Based Drug Repositioning Using Large-Scale Chemical-Protein Interactome Data. J. Chem. Inf. Model. Ryusuke Sawada, Hiroaki Iwata, Sayaka Mizutani, Yoshihiro Yamanishi
2013	C	`conf`	Forward obstacle detection in a lane by stereo vision. IECON Hiroaki Iwata, Keiji Saneyoshi
2013	J	`jnl`	Inferring protein domains associated with drug side effects based on drug-target interaction network. BMC Syst. Biol. Hiroaki Iwata, Sayaka Mizutani, Yasuo Tabei, Masaaki Kotera, Susumu Goto, Yoshihiro Yamanishi
2012	—	`conf`	Forward obstacle detection system by stereo vision. ROBIO Hiroaki Iwata, Keiji Saneyoshi