Hirak Sarkar

19 papers B 3Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2025 B conf
Joint Imputation and Deconvolution of Gene Expression Across Spatial Transcriptomics Platforms.
RECOMB
Hongyu Zheng, Hirak Sarkar, Benjamin J. Raphael
2024 J jnl
A count-based model for delineating cell-cell interactions in spatial transcriptomics data.
Bioinform.
Hirak Sarkar, Uthsav Chitra, Julian Gold, Benjamin J. Raphael
2024 B conf
Mapping the Topography of Spatial Gene Expression with Interpretable Deep Learning.
RECOMB
Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, Cong Ma, Sereno Lopez-Darwin, Kohei Sanno, Benjamin J. Raphael
2022 J jnl
Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets.
Bioinform.
Wancen Mu, Hirak Sarkar, Avi Srivastava, Kwangbom Choi, Rob Patro, Michael I. Love
2021 J jnl
Compression of quantification uncertainty for scRNA-seq counts.
Bioinform.
Scott Van Buren, Hirak Sarkar, Avi Srivastava, Naim U. Rashid, Rob Patro, Michael I. Love
2020 J jnl
A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification.
Bioinform.
Avi Srivastava, Laraib Malik, Hirak Sarkar, Rob Patro
2020 — —
Computational approaches for improving the accuracy and efficiency of RNA-seq analysis.
Hirak Sarkar
2020 — conf
Social Media Attributions in the Context of Water Crisis.
EMNLP (1)
Rupak Sarkar, Sayantan Mahinder, Hirak Sarkar, Ashiqur R. KhudaBukhsh
2020 J jnl
Social Media Attributions in the Context of Water Crisis.
CoRR
Rupak Sarkar, Hirak Sarkar, Sayantan Mahinder, Ashiqur R. KhudaBukhsh
2020 J jnl
Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data.
Bioinform.
Hirak Sarkar, Avi Srivastava, Héctor Corrada Bravo, Michael I. Love, Rob Patro
2019 J jnl
Minnow: a principled framework for rapid simulation of dscRNA-seq data at the read level.
Bioinform.
Hirak Sarkar, Avi Srivastava, Rob Patro
2018 J jnl
A space and time-efficient index for the compacted colored de Bruijn graph.
Bioinform.
Fatemeh Almodaresi, Hirak Sarkar, Avi Srivastava, Rob Patro
2018 — conf
Towards Selective-Alignment: Bridging the Accuracy Gap between Alignment-Based and Alignment-Free Transcript Quantification.
BCB
Hirak Sarkar, Mohsen Zakeri, Laraib Malik, Rob Patro
2017 J jnl
Quark enables semi-reference-based compression of RNA-seq data.
Bioinform.
Hirak Sarkar, Rob Patro
2016 J jnl
Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes.
CoRR
Avi Srivastava, Hirak Sarkar, Laraib Malik, Rob Patro
2016 J jnl
RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.
Bioinform.
Avi Srivastava, Hirak Sarkar, Nitish Gupta, Rob Patro
2015 J jnl
Voronoi game on graphs.
Theor. Comput. Sci.
Sayan Bandyapadhyay, Aritra Banik, Sandip Das, Hirak Sarkar
2014 J jnl
Voronoi Game on Graphs.
CoRR
Sayan Bandyapadhyay, Aritra Banik, Sandip Das, Hirak Sarkar
2013 B conf
Voronoi Game on Graphs.
WALCOM
Sayan Bandyapadhyay, Aritra Banik, Sandip Das, Hirak Sarkar