Hilal Kazan

16 papers Journal 15
YearRankTypeTitle / Venue / Authors
2025 J jnl
SCITUNA: single-cell data integration tool using network alignment.
BMC Bioinform.
Aissa Houdjedj, Yacine Marouf, Mekan Myradov, Süleyman Onur Dogan, Burak Onur Erten, Oznur Tastan, Cesim Erten, Hilal Kazan
2023 J jnl
Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ibrahim Berber, Cesim Erten, Hilal Kazan
2022 J jnl
PersonaDrive: a method for the identification and prioritization of personalized cancer drivers.
Bioinform.
Cesim Erten, Aissa Houdjedj, Hilal Kazan, Ahmed Amine Taleb Bahmed
2021 J jnl
Ranking cancer drivers via betweenness-based outlier detection and random walks.
BMC Bioinform.
Cesim Erten, Aissa Houdjedj, Hilal Kazan
2021 J jnl
Sparse data embedding and prediction by tropical matrix factorization.
BMC Bioinform.
Amra Omanovic, Hilal Kazan, Polona Oblak, Tomaz Curk
2020 J jnl
Data embedding and prediction by sparse tropical matrix factorization.
CoRR
Amra Omanovic, Hilal Kazan, Polona Oblak, Tomaz Curk
2020 J jnl
MEXCOwalk: mutual exclusion and coverage based random walk to identify cancer modules.
Bioinform.
Rafsan Ahmed, Ilyes Baali, Cesim Erten, Evis Hoxha, Hilal Kazan
2019 J jnl
RBPSponge: genome-wide identification of lncRNAs that sponge RBPs.
Bioinform.
Saber HafezQorani, Aissa Houdjedj, Mehmet Arici, Abdesselam Said, Hilal Kazan
2016 J jnl
A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer).
BMC Bioinform.
Nathan D. Berkowitz, Ian M. Silverman, Daniel M. Childress, Hilal Kazan, Li-San Wang, Brian D. Gregory
2016 J jnl
JBASE: Joint Bayesian Analysis of Subphenotypes and Epistasis.
Bioinform.
Recep Colak, TaeHyung Kim, Hilal Kazan, Yoomi Oh, Miguel Cruz, Adan Valladares-Salgado, Jesus Peralta, Jorge Escobedo, Esteban J. Parra, Philip M. Kim, Anna Goldenberg
2014 J jnl
Target-Independent Prediction of Drug Synergies Using Only Drug Lipophilicity.
J. Chem. Inf. Model.
Kaan Yilancioglu, Zohar B. Weinstein, Cem Meydan, Azat Akhmetov, Isil Toprak, Arda Durmaz, Ivan Iossifov, Hilal Kazan, Frederick P. Roth, Murat Cokol
2013 J jnl
A compendium of RNA-binding motifs for decoding gene regulation.
Nat.
Debashish Ray, Hilal Kazan, Kate B. Cook, Matthew T. Weirauch, Hamed S. Najafabadi, Xiao Li, Serge Gueroussov, Mihai Albu, Hong Zheng, Ally Yang, Hong Na, Manuel Irimia, Leah H. Matzat, Ryan K. Dale, Sarah A. Smith, Christopher A. Yarosh, Seth M. Kelly, Behnam Nabet, Desirea Mecenas, Weimin Li, Rakesh S. Laishram, Mei Qiao, Howard D. Lipshitz, Fabio Piano, Anita H. Corbett, Russ P. Carstens, Brendan J. Frey, Richard A. Anderson, Kristen W. Lynch, Luiz O. F. Penalva, Elissa P. Lei, Andrew G. Fraser, Benjamin J. Blencowe, Quaid Morris, Timothy R. Hughes
2013 J jnl
RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins.
Nucleic Acids Res.
Hilal Kazan, Quaid Morris
2012 — —
Inferring the Binding Preferences of RNA-binding Proteins.
Hilal Kazan
2011 J jnl
RBPDB: a database of RNA-binding specificities.
Nucleic Acids Res.
Kate B. Cook, Hilal Kazan, Khalid Zuberi, Quaid Morris, Timothy R. Hughes
2010 J jnl
RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins.
PLoS Comput. Biol.
Hilal Kazan, Debashish Ray, Esther T. Chan, Timothy R. Hughes, Quaid Morris