Hidetoshi Kono

16 papers B 2Journal 14
YearRankTypeTitle / Venue / Authors
2025 J jnl
Mechanistic Insights into HP1α CSD Oligomerization and the Role of
J. Chem. Inf. Model.
Amarjeet Kumar, Shun Sakuraba, Nitika Gaurav, Karthik Selvam, Tatiana G. Kutateladze, Hidetoshi Kono
2022 J jnl
Extended ensemble simulations of a SARS-CoV-2 nsp1-5'-UTR complex.
PLoS Comput. Biol.
Shun Sakuraba, Qilin Xie, Kota Kasahara, Junichi Iwakiri, Hidetoshi Kono
2019 J jnl
Correction: Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA.
PLoS Comput. Biol.
Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida
2018 J jnl
Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA.
PLoS Comput. Biol.
Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida
2016 J jnl
H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation.
PLoS Comput. Biol.
Jinzen Ikebe, Shun Sakuraba, Hidetoshi Kono
2014 J jnl
Adaptive lambda square dynamics simulation: An efficient conformational sampling method for biomolecules.
J. Comput. Chem.
Jinzen Ikebe, Shun Sakuraba, Hidetoshi Kono
2008 J jnl
coliSNP database server mapping nsSNPs on protein structures.
Nucleic Acids Res.
Hidetoshi Kono, Tomo Yuasa, Shinya Nishiue, Kei Yura
2006 B conf
Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach.
APBC
Marcos J. Araúzo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai
2006 J jnl
ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition.
Nucleic Acids Res.
Shandar Ahmad, Hidetoshi Kono, Marcos J. Araúzo-Bravo, Akinori Sarai
2005 J jnl
Integration of Bioinformatics and Computational Biology to Understand Protein-dna Recognition Mechanism.
J. Bioinform. Comput. Biol.
Akinori Sarai, Jorg Siebers, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono
2005 J jnl
Progress in the development and application of computational methods for probabilistic protein design.
Comput. Chem. Eng.
Sheldon Park, Hidetoshi Kono, Wei Wang, Eric T. Boder, Jeffery G. Saven
2004 B conf
Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors.
APBC
Akinori Sarai, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono
2001 J jnl
Thermodynamic database for protein-nucleic acid interactions (ProNIT).
Bioinform.
Ponraj Prabakaran, Jianghong An, M. Michael Gromiha, Samuel Selvaraj, Hatsuho Uedaira, Hidetoshi Kono, Akinori Sarai
2000 J jnl
Multicanonical Monte Carlo calculation of the free-energy map of the base-amino acid interaction.
J. Comput. Chem.
Kenji Sayano, Hidetoshi Kono, M. Michael Gromiha, Akinori Sarai
2000 J jnl
ProTherm, version 2.0: thermodynamic database for proteins and mutants.
Nucleic Acids Res.
M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Ponraj Prabakaran, Akinori Sarai
1999 J jnl
ProTherm: Thermodynamic Database for Proteins and Mutants.
Nucleic Acids Res.
M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Akinori Sarai