Hideo Matsuda - RankMe

59 papers A 2B 3C 3Misc 1Journal 25Unranked 25

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Learning from Similarity Proportion Loss for Classifying Skeletal Muscle Recovery Stages. CoRR Yu Yamaoka, Weng Ian Chan, Shigeto Seno, Soichiro Fukada, Hideo Matsuda
2024	—	`conf`	Accurate Detection of Fusion Genes in Long-Read Transcriptome Datasets from Multiple Cancer Cell Lines. ICBBB Keigo Masuda, Yoshiaki Sota, Hideo Matsuda
2024	—	`conf`	Communication Analysis between Human Hair-Follicles and Immune Cells with Single-cell RNA-seq. ICBBE Ayaka Mori-Ichioka, Hironori Shigeta, Shigeto Seno, Hideo Matsuda
2024	J	`jnl`	Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach. Biosyst. Kazufumi Hosoda, Shigeto Seno, Naomi Murakami, Hideo Matsuda, Yutaka Osada, Rikuto Kamiura, Michio Kondoh
2023	—	`conf`	Cell Tracking via Reinforcement Learning with Microscopic Image Simulator. ICBET Toru Nagamura, Shigeto Seno, Hironori Shigeta, Tomohiro Mashita, Hideo Matsuda
2023	—	`conf`	Pseudotime-based Deep Learning of Gene Regulatory Relationships from Single-Cell Expression Data. ICBET Koki Nishi, Junko Yoshida, Shigeto Seno, Kyoji Horie, Hideo Matsuda
2022	—	`conf`	A Method for Detection of Markers for Epithelial-Mesenchymal Transition based on Single Cell Transcriptomic Data. ICBBB Kosho Murayama, Hideo Matsuda
2022	—	`conf`	A Novel Method for Fusion Gene Detection using Both End-Fragment Sequences of Long Reads. ICBBE Keigo Masuda, Yoshiaki Sota, Hideo Matsuda
2022	—	`conf`	Inference of Cell-Cell Communication for Detecting Immune Disease-Associated Signaling Pathways using Single-Cell RNA-seq. ICBBE Akihiro Nomura, Hideo Matsuda
2021	—	`conf`	A CNN-based cell tracking method for multi-slice intravital imaging data. BCB Kenji Fujimoto, Tsubasa Mizugaki, Utkrisht Rajkumar, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Masaru Ishii, Vineet Bafna, Hideo Matsuda
2019	C	`conf`	Analyzing Leukocyte Migration Trajectories by Deformable Image Matching. BIBE Hironori Shigeta, Shigeto Seno, Shino Nishizawa, Yutaka Uchida, Junichi Kikuta, Masaru Ishii, Hideo Matsuda
2019	J	`jnl`	Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. Viacheslav Kapilevich, Shigeto Seno, Hideo Matsuda, Yoichi Takenaka
2019	J	`jnl`	Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads. J. Bioinform. Comput. Biol. Yoshiaki Sota, Shigeto Seno, Hironori Shigeta, Naoki Osato, Masafumi Shimoda, Shinzaburo Noguchi, Hideo Matsuda
2019	—	`conf`	Single-cell Transcriptome Analysis of Mouse Leukocytes in Inflammatory Stimulation. BIBM Naoki Osato, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Junichi Kikuta, Masaru Ishii, Hideo Matsuda
2018	—	`conf`	Asymmetric Integration of Single-Cell Transcriptomic Data using Latent Dirichlet Allocation and Procrustes Analysis. BIBM Mitsuhiro Eto, Wataru Hirota, Shigeto Seno, Hideo Matsuda
2018	J	`jnl`	Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells. BMC Bioinform. Yoichi Takenaka, Kazuma Mikami, Shigeto Seno, Hideo Matsuda
2018	C	`conf`	Detection of Fusion Genes from Human Breast Cancer Cell-Line RNA-Seq Data Using Shifted Short Read Clustering. BIBE Yoshiaki Sota, Shigeto Seno, Hironori Shigeta, Naoki Osato, Masafumi Shimoda, Shinzaburo Noguchi, Hideo Matsuda
2017	J	`jnl`	Bone marrow cavity segmentation using graph-cuts with wavelet-based texture feature. J. Bioinform. Comput. Biol. Hironori Shigeta, Tomohiro Mashita, Junichi Kikuta, Shigeto Seno, Haruo Takemura, Masaru Ishii, Hideo Matsuda
2016	B	`conf`	A bone marrow cavity segmentation method using wavelet-based texture feature. ICPR Hironori Shigeta, Tomohiro Mashita, Junichi Kikuta, Shigeto Seno, Haruo Takemura, Hideo Matsuda, Masaru Ishii
2016	C	`conf`	Comparative Analysis of Transformation Methods for Gene Expression Profiles in Breast Cancer Datasets. BIBE Yoshiaki Sota, Shigeto Seno, Yoichi Takenaka, Shinzaburo Noguchi, Hideo Matsuda
2015	J	`jnl`	Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution. J. Bioinform. Comput. Biol. Yoichi Takenaka, Shigeto Seno, Hideo Matsuda
2014	—	`conf`	A Graph Cuts Image Segmentation Method for Quantifying Barrier Permeation in Bone Tissue. I3A@ICPR Hironori Shigeta, Tomohiro Mashita, Takeshi Kaneko, Junichi Kikuta, Shigeto Seno, Haruo Takemura, Hideo Matsuda, Masaru Ishii
2014	—	`conf`	A Segmentation Method for Bone Marrow Cavity Imaging Using Graph Cuts. I3A@ICPR Tomohiro Mashita, Jun Usam, Hironori Shigeta, Yoshihiro Kuroda, Junichi Kikuta, Shigeto Seno, Masaru Ishii, Hideo Matsuda, Haruo Takemura
2012	J	`jnl`	A Method for Isoform Prediction from RNA-Seq Data by Iterative Mapping. Inf. Media Technol. Tomoshige Ohno, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
2012	J	`jnl`	An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems. BMC Genom. Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
2010	J	`jnl`	Improved Prediction Method for Protein Interactions Using Both Structural and Functional Characteristics of Proteins. Inf. Media Technol. Tatsuya Yoshikawa, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
2009	J	`jnl`	Gendoo: Functional profiling of gene and disease features using MeSH vocabulary. Nucleic Acids Res. Takeru Nakazato, Hidemasa Bono, Hideo Matsuda, Toshihisa Takagi
2008	J	`jnl`	BioCompass: A Novel Functional Inference Tool that Utilizes MeSH Hierarchy to Analyze Groups of Genes. Silico Biol. Takeru Nakazato, Toru Takinaka, Hironori Mizuguchi, Hideo Matsuda, Hidemasa Bono, Minoru Asogawa
2007	J	`jnl`	Tissue-specific functions based on information content of gene ontology using cap analysis gene expression. Medical Biol. Eng. Comput. Sami Maekawa, Atsuko Matsumoto, Yoichi Takenaka, Hideo Matsuda
2005	B	`conf`	A Grid Environment for Data Integration of Scientific Databases. e-Science Hideo Matsuda
2005	—	`conf`	A Grid-based Information Integration System for Drug Discovery. ICDE Workshops Gen Kawamura, Masato Kitajima, Kentaro Wakatsuki, Takehiro Furudate, Takahiro Kosaka, Kazuto Yamazaki, Reiji Teramoto, Susumu Date, Shinji Shimojo, Hideo Matsuda
2005	—	`conf`	Designing a Rule-Based Environment to Interoperate Life-Scientific Ontologies for Drug Discovery. SAINT Workshops Takahiro Kosaka, Susumu Date, Hideo Matsuda, Shinji Shimojo
2004	J	`jnl`	A Challenge towards Next-Generation Research Infrastructure for Advanced Life Science. New Gener. Comput. Haruki Nakamura, Susumu Date, Hideo Matsuda, Shinji Shimojo
2004	—	`conf`	A Graph Analysis Method to Detect Metabolic Sub-Networks Based on Phylogenetic Profile. CSB Shoko Miyake, Yoichi Takenaka, Hideo Matsuda
2004	J	`jnl`	FREP: a database of functional repeats in mouse cDNAs. Nucleic Acids Res. Takeshi Nagashima, Hideo Matsuda, Diego G. Silva, Nikolai Petrovsky, Akihiko Konagaya, Christian Schönbach
2004	J	`jnl`	Graph-based clustering for finding distant relationships in a large set of protein sequences. Bioinform. Hideya Kawaji, Yoichi Takenaka, Hideo Matsuda
2004	—	`conf`	Heterogeneous Database Federation Using Grid Technology for Drug Discovery Process. LSGRID Yukako Tohsato, Takahiro Kosaka, Susumu Date, Shinji Shimojo, Hideo Matsuda
2004	—	`conf`	Inference of Gene Regulatory Network Based on Module Network Model with Gene Functional Classifications. CSB Kohei Taki, Reiji Teramoto, Yoichi Takenaka, Hideo Matsuda
2003	B	`conf`	Clustering Method for Comparative Analysis between Genomes and Pathways. DASFAA Shoko Miyake, Yukako Tohsato, Yoichi Takenaka, Hideo Matsuda
2003	J	`jnl`	MaXML: mouse annotation XML. Silico Biol. Takeya Kasukawa, Hidemasa Bono, Yoshihide Hayashizaki, Yasushi Okazaki, Hideo Matsuda
2002	—	`conf`	An Application of a Pathway Alignment Method to Comparative Analysis between Genome and Pathways. CSB Shoko Miyake, Yukako Tohsato, Hideo Matsuda
2002	—	`conf`	P-quasi Complete Linkage Analysis for Gene-Expression Data. CSB Shigeto Seno, Reiji Teramoto, Hideo Matsuda
2002	J	`jnl`	Using Data Compression for Multidimensional Distribution Analysis. IEEE Intell. Syst. Kentaro Onizuka, Tamotsu Noguchi, Yutaka Akiyama, Hideo Matsuda
2001	J	`jnl`	PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB). Nucleic Acids Res. Tamotsu Noguchi, Hideo Matsuda, Yutaka Akiyama
2000	A	`conf`	A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy. ISMB Yukako Tohsato, Hideo Matsuda, Akihiro Hashimoto
2000	J	`jnl`	An efficient procedure for maintaining materialized views on distributed database systems. Syst. Comput. Jpn. Takeya Kasukawa, Michio Nakanishi, Hideo Matsuda, Akihiro Hashimoto
2000	Misc	`conf`	Hierarchical Approach to Parallel Tree Search for Protein Conformational Analysis. PDPTA Makoto Ando, Yutaka Akiyama, Hideo Matsuda
2000	J	`jnl`	Quick selection of representative protein chain sets based on customizable requirements. Bioinform. Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando, Hideo Matsuda, Yutaka Akiyama
1999	J	`jnl`	Classifying Molecular Sequences Using a Linkage Graph With Their Pairwise Similarities. Theor. Comput. Sci. Hideo Matsuda, T. Ishihara, Akihiro Hashimoto
1995	—	`conf`	High Performance I/O System of the Distributed Shared-Memory Massively Parallel Computer JUMP-1. Parallel and Distributed Computing and Systems Hironori Nakajo, Takashi Matsumoto, Masaki Kohata, Hideo Matsuda, Kei Hiraki, Yukio Kaneda
1994	J	`jnl`	An Application of an OR-Parallel Prolog Systemto Phylogenetic Analysis. LISP Symb. Comput. Hideo Matsuda, Yukio Kaneda
1994	A	`conf`	Fast phylogenetic analysis on a massively parallel machine. International Conference on Supercomputing Hideo Matsuda, Gary J. Olsen, Ross A. Overbeek, Yukio Kaneda
1994	—	`conf`	Overview of the JUMP-1, an MPP prototype for general-purpose parallel computations. ISPAN Kei Hiraki, Hideharu Amano, Morihiro Kuga, Toshinori Sueyoshi, Tomohiro Kudoh, Hiroshi Nakashima, Hironori Nakajo, Hideo Matsuda, Takashi Matsumoto, Shin-ichiro Mori
1994	J	`jnl`	fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. Gary J. Olsen, Hideo Matsuda, Ray Hagstrom, Ross A. Overbeek
1992	—	`conf`	A Priority Control System for OR-Parallel Prolog and Its Performance Evaluation. Parallel Symbolic Computing Yukio Kaneda, Hideo Matsuda, Shigeo Suzuka
1987	—	`conf`	Implementing Parallel Prolog System on Multiprocessor System PARK. IWDM Hideo Matsuda, M. Kohata, T. Masuo, Yukio Kaneda, Sadao Maekawa
1986	J	`jnl`	Sequential Prolog Machine PEK. New Gener. Comput. Yukio Kaneda, Naoyuki Tamura, Koichi Wada, Hideo Matsuda, Shumin Kuo, Sadao Maekawa
1985	—	`conf`	Parallel Prolog Machine PARK: Its Hardware Structure and Prolog System. LP Hideo Matsuda, M. Kohata, T. Masuo, Yukio Kaneda, Sadao Maekawa
1984	—	`conf`	Sequential Prolog Machine PEK. FGCS Naoyuki Tamura, Koichi Wada, Hideo Matsuda, Yukio Kaneda, Sadao Maekawa