Herman J. C. Berendsen

13 papers Misc 1Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2013 — conf
MPI Parallelization of Innovative DPD Thermostats.
ICHI
Nicolae Goga, Herman J. C. Berendsen, Svetlana Baoukina, Sunita Andreea Moga, George Dragoi, Anton Hadar, B. Paviloiu
2011 J jnl
Determining equilibrium constants for dimerization reactions from molecular dynamics simulations.
J. Comput. Chem.
Djurre H. De Jong, Lars V. Schäfer, Alex H. de Vries, Siewert J. Marrink, Herman J. C. Berendsen, Helmut Grubmüller
2005 J jnl
GROMACS: Fast, flexible, and free.
J. Comput. Chem.
David van der Spoel, Erik Lindahl, Berk Hess, Gerrit Groenhof, Alan E. Mark, Herman J. C. Berendsen
1999 J jnl
Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems.
J. Comput. Chem.
K. Anton Feenstra, Berk Hess, Herman J. C. Berendsen
1999 — ch.
Molecular Dynamics Simulations: The Limits and Beyond.
Computational Molecular Dynamics
Herman J. C. Berendsen
1999 J jnl
Simulation of slow reaction with quantum character: Neutral hydrolysis of carboxylic ester.
J. Comput. Chem.
Marc F. Lensink, Janez Mavri, Herman J. C. Berendsen
1997 J jnl
A comparison of techniques for calculating protein essential dynamics.
J. Comput. Chem.
Daan M. F. van Aalten, Bert L. de Groot, John B. C. Findlay, Herman J. C. Berendsen, Andrea Amadei
1997 J jnl
LINCS: A linear constraint solver for molecular simulations.
J. Comput. Chem.
Berk Hess, Henk Bekker, Herman J. C. Berendsen, Johannes G. E. M. Fraaije
1996 J jnl
Simultaneous integration of mixed quantum-classical systems by density matrix evolution equations using interaction representation and adaptive time step integrator.
J. Comput. Chem.
Marc F. Lensink, Janez Mavri, Herman J. C. Berendsen
1996 Misc conf
The Amfisbaena: A Parallel Sup computer System Based on i860 as a Generic Platform for Molecular Dynamics Simulation.
PDPTA
Rudi van Drunen, Cees van Teylingen, Marcel Kroontje, Herman J. C. Berendsen
1992 J jnl
Conformational search by potential energy annealing: Algorithm and application to cyclosporin A.
J. Comput. Aided Mol. Des.
René C. van Schaik, Wilfred F. van Gunsteren, Herman J. C. Berendsen
1988 J jnl
Dynamic simulation as an essential tool in molecular modeling.
J. Comput. Aided Mol. Des.
Herman J. C. Berendsen
1987 J jnl
Thermodynamic cycle integration by computer simulation as a tool for obtaining free energy differences in molecular chemistry.
J. Comput. Aided Mol. Des.
Wilfred F. van Gunsteren, Herman J. C. Berendsen