Herbert M. Sauro

75 papers A 1C 1Misc 5Journal 65Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
PLoS Comput. Biol.
Janis Shin, James M. Carothers, Herbert M. Sauro
2025 J jnl
Bioinform.
Joseph L. Hellerstein, Lucian P. Smith, Lillian T. Tatka, Steven S. Andrews, Michael A. Kochen, Herbert M. Sauro
2025 J jnl
PLoS Comput. Biol.
Adel Heydarabadipour, Lucian P. Smith, Joseph L. Hellerstein, Herbert M. Sauro
2025 J jnl
PLoS Comput. Biol.
Lucian P. Smith, Rahuman S. Malik-Sheriff, Tung V. N. Nguyen, Henning Hermjakob, Jonathan R. Karr, Bilal Shaikh, Logan Drescher, Ion I. Moraru, James C. Schaff, Eran Agmon, Alexander A. Patrie, Michael L. Blinov, Joseph L. Hellerstein, Elebeoba E. May, David P. Nickerson, John H. Gennari, Herbert M. Sauro
2024 J jnl
J. Integr. Bioinform.
Bartholomew E. Jardine, Lucian P. Smith, Herbert M. Sauro
2024 J jnl
J. Integr. Bioinform.
Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König
2023 J jnl
Bioinform.
Woosub Shin, John H. Gennari, Joseph L. Hellerstein, Herbert M. Sauro
2023 J jnl
Biosyst.
Lillian T. Tatka, Wesley Luk, Timothy C. Elston, Joseph L. Hellerstein, Herbert M. Sauro
2023 J jnl
Bioinform.
Jin Xu, Jessie Jiang, Herbert M. Sauro
2023 J jnl
Biosyst.
Jin Xu, Gary Geng, Nhan D. Nguyen, Carmen Perena-Cortes, Claire Samuels, Herbert M. Sauro
2023 J jnl
PLoS Comput. Biol.
T. J. Sego, James P. Sluka, Herbert M. Sauro, James A. Glazier
2023 J jnl
Bioinform.
Steve Ma, Longxuan Fan, Sai Anish Konanki, Eva Liu, John H. Gennari, Lucian P. Smith, Joseph L. Hellerstein, Herbert M. Sauro
2023 J jnl
Biosyst.
Frank J. Bruggeman, Maaike Remeijer, Maarten Droste, Luis Salinas, Meike T. Wortel, Robert Planqué, Herbert M. Sauro, Bas Teusink, Hans V. Westerhoff
2023 J jnl
Bioinform.
Ciaran M. Welsh, Jin Xu, Lucian P. Smith, Matthias König, Kiri Choi, Herbert M. Sauro
2022 J jnl
CoRR
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
2022 J jnl
Nucleic Acids Res.
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
2022 J jnl
Bioinform.
Michael A. Kochen, H. Steven Wiley, Song Feng, Herbert M. Sauro
2022 J jnl
CoRR
Ciaran M. Welsh, Jin Xu, Lucian P. Smith, Matthias König, Kiri Choi, Herbert M. Sauro
2021 J jnl
Briefings Bioinform.
Veronica Porubsky, Lucian P. Smith, Herbert M. Sauro
2021 J jnl
J. Integr. Bioinform.
Hasan Baig, Pedro Fontanarosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Jihwan Lee, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers
2021 J jnl
J. Integr. Bioinform.
Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König
2021 J jnl
Bioinform.
Ciaran M. Welsh, David P. Nickerson, Anand K. Rampadarath, Maxwell Lewis Neal, Herbert M. Sauro, John H. Gennari
2020 J jnl
PLoS Comput. Biol.
J. Kyle Medley, Jonathan J. Y. Teo, Sung Sik Woo, Joseph L. Hellerstein, Rahul Sarpeshkar, Herbert M. Sauro
2020 J jnl
PLoS Comput. Biol.
Jason A. Papin, Feilim Mac Gabhann, Herbert M. Sauro, David P. Nickerson, Anand K. Rampadarath
2020 J jnl
J. Integr. Bioinform.
Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers
2020 J jnl
J. Integr. Bioinform.
Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik-Sheriff, David P. Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers
2020 J jnl
Biosyst.
J. Kyle Medley, Joseph L. Hellerstein, Herbert M. Sauro
2019 J jnl
CoRR
Parker S. Ruth, Herbert M. Sauro
2019 J jnl
Briefings Bioinform.
Maxwell Lewis Neal, Matthias König, David P. Nickerson, Goksel Misirli, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling, Daniel L. Cook, Sharon M. Crook, Miguel de Alba, Samuel H. Friedman, Alan Garny, John H. Gennari, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick S. Juty, Chris J. Myers, Brett G. Olivier, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer, Dagmar Waltemath
2019 J jnl
J. Integr. Bioinform.
Curtis Madsen, Ángel Goñi-Moreno, Umesh P, Zachary Palchick, Nicholas Roehner, Christian Atallah, Bryan Bartley, Kiri Choi, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Chris Macklin, James Alastair McLaughlin, Xianwei Meng, Tramy Nguyen, Matthew R. Pocock, Meher Samineni, James Scott-Brown, Ysis Tarter, Michael Zhang, Zhen Zhang, Zach Zundel, Jacob Beal, Michael Bissell, Kevin Clancy, John H. Gennari, Goksel Misirli, Chris J. Myers, Ernst Oberortner, Herbert M. Sauro, Anil Wipat
2019 J jnl
J. Integr. Bioinform.
Curtis Madsen, Ángel Goñi-Moreno, Zachary Palchick, Umesh P, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, James Alastair McLaughlin, Tramy Nguyen, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat
2018 J jnl
Biosyst.
Yosef Bedaso, Frank T. Bergmann, Kiri Choi, Kyle Medley, Herbert M. Sauro
2018 J jnl
J. Integr. Bioinform.
Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Jacob Beal, Michael Bissell, Kiri Choi, Kevin Clancy, Raik Grünberg, Chris Macklin, Goksel Misirli, Ernst Oberortner, Matthew R. Pocock, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari, Chris J. Myers, Herbert M. Sauro, Anil Wipat
2018 J jnl
J. Integr. Bioinform.
Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat
2018 J jnl
PLoS Comput. Biol.
J. Kyle Medley, Kiri Choi, Matthias König, Lucian P. Smith, Stanley Gu, Joseph L. Hellerstein, Stuart C. Sealfon, Herbert M. Sauro
2018 J jnl
Biosyst.
Kiri Choi, J. Kyle Medley, Matthias König, Kaylene Stocking, Lucian P. Smith, Stanley Gu, Herbert M. Sauro
2016 J jnl
J. Integr. Bioinform.
Jacob Beal, Robert Sidney Cox III, Raik Grünberg, James Alastair McLaughlin, Tramy Nguyen, Bryan Bartley, Michael Bissell, Kiri Choi, Kevin Clancy, Chris Macklin, Curtis Madsen, Goksel Misirli, Ernst Oberortner, Matthew R. Pocock, Nicholas Roehner, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari, Chris J. Myers, Herbert M. Sauro, Anil Wipat
2016 J jnl
J. Bioinform. Comput. Biol.
Kiri Choi, Lucian P. Smith, J. Kyle Medley, Herbert M. Sauro
2015 J jnl
IEEE Trans. Biomed. Circuits Syst.
Kyung Hyuk Kim, Kiri Choi, Bryan Bartley, Herbert M. Sauro
2015 J jnl
J. Integr. Bioinform.
Bryan Bartley, Jacob Beal, Kevin Clancy, Goksel Misirli, Nicholas Roehner, Ernst Oberortner, Matthew R. Pocock, Michael Bissell, Curtis Madsen, Tramy Nguyen, Zhen Zhang, John H. Gennari, Chris J. Myers, Anil Wipat, Herbert M. Sauro
2015 J jnl
CoRR
Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier, Matthias König, J. Kyle Medley, Maciej H. Swat, Herbert M. Sauro
2015 J jnl
Bioinform.
Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier, Matthias König, J. Kyle Medley, Maciej H. Swat, Herbert M. Sauro
2014 J jnl
Bioinform.
Maxwell Lewis Neal, Michal Galdzicki, J. T. Gallimore, Herbert M. Sauro
2014 J jnl
PLoS Comput. Biol.
Maxwell Lewis Neal, Michael T. Cooling, Lucian P. Smith, Christopher T. Thompson, Herbert M. Sauro, Brian E. Carlson, Daniel L. Cook, John H. Gennari
2014 J jnl
BMC Bioinform.
Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
2014 J jnl
CoRR
Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
2014 J jnl
ACM J. Emerg. Technol. Comput. Syst.
Chris J. Myers, Herbert M. Sauro, Anil Wipat
2014 J jnl
BMC Syst. Biol.
Pablo Meyer, Thomas Cokelaer, Deepak Chandran, Kyung Hyuk Kim, Po-Ru Loh, George Tucker, Mark Lipson, Bonnie Berger, Clemens Kreutz, Andreas Raue, Bernhard Steiert, Jens Timmer, Erhan Bilal, Herbert M. Sauro, Gustavo Stolovitzky, Julio Saez-Rodriguez
2014 J jnl
Bioinform.
Lucian P. Smith, Erik Butterworth, James B. Bassingthwaighte, Herbert M. Sauro
2012 J jnl
PLoS Comput. Biol.
Kyung Hyuk Kim, Herbert M. Sauro
2012 C conf
ALIFE
Sean C. Sleight, Herbert M. Sauro
2012 conf
CDC
Kyung Hyuk Kim, Herbert M. Sauro
2012 A conf
ICCAD
Natasa Miskov-Zivanov, James R. Faeder, Chris J. Myers, Herbert M. Sauro
2011 J jnl
PLoS Comput. Biol.
Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère
2010 J jnl
Bioinform.
Si Yuan Shen, Frank T. Bergmann, Herbert M. Sauro
2009 J jnl
Bioinform.
Lucian P. Smith, Frank T. Bergmann, Deepak Chandran, Herbert M. Sauro
2009 ch.
Encyclopedia of Complexity and Systems Science
Herbert M. Sauro
2008 J jnl
Bioinform.
Frank T. Bergmann, Herbert M. Sauro
2007 J jnl
SIAM J. Appl. Dyn. Syst.
Vijay Chickarmane, Animesh Ray, Herbert M. Sauro, Ali Nadim
2007 J jnl
Bioinform.
Ravishankar Rao Vallabhajosyula, Herbert M. Sauro
2006 J jnl
Nucleic Acids Res.
Nicolas Le Novère, Benjamin J. Bornstein, Alexander Broicher, Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert M. Sauro, Maria J. Schilstra, Bruce E. Shapiro, Jacky L. Snoep, Michael Hucka
2006 Misc conf
WSC
Herbert M. Sauro, David Harel, Marta Z. Kwiatkowska, Clifford A. Shaffer, Adelinde M. Uhrmacher, Michael Hucka, Pedro Mendes, Lena Strömbäck, John J. Tyson
2006 Misc conf
WSC
Ravishankar Rao Vallabhajosyula, Herbert M. Sauro
2006 J jnl
Bioinform.
Ravishankar Rao Vallabhajosyula, Vijay Chickarmane, Herbert M. Sauro
2006 Misc conf
WSC
Herbert M. Sauro
2006 Misc conf
WSC
Frank T. Bergmann, Herbert M. Sauro
2006 conf
EMBC
Herbert M. Sauro
2006 J jnl
Bioinform.
Anastasia Deckard, Frank T. Bergmann, Herbert M. Sauro
2006 J jnl
PLoS Comput. Biol.
Vijay Chickarmane, Carl Troein, Ulrike A. Nuber, Herbert M. Sauro, Carsten Peterson
2005 J jnl
Bioinform.
Vijay Chickarmane, Sri R. Paladugu, Frank T. Bergmann, Herbert M. Sauro
2005 J jnl
Bioinform.
Cameron Wellock, Vijay Chickarmane, Herbert M. Sauro
2003 J jnl
Bioinform.
Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang
2002 Misc conf
Pacific Symposium on Biocomputing
Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano
1997 J jnl
Comput. Appl. Biosci.
J. H. Woods, Herbert M. Sauro
1993 J jnl
Comput. Appl. Biosci.
Herbert M. Sauro