Heng Li

39 papers A 1B 1Journal 37
YearRankTypeTitle / Venue / Authors
2026 J jnl
Finding low-complexity DNA sequences with longdust.
Bioinform.
Heng Li, Brian Li
2026 J jnl
Improving spliced alignment by modeling splice sites with deep learning.
Algorithms Mol. Biol.
Siying Yang, Neng Huang, Heng Li
2025 B conf
Devider: Long-Read Reconstruction of Many Diverse Haplotypes.
RECOMB
Jim Shaw, Christina Boucher, Yun William Yu, Noelle R. Noyes, Heng Li
2024 J jnl
BWT construction and search at the terabase scale.
Bioinform.
Heng Li
2023 J jnl
AGC: compact representation of assembled genomes with fast queries and updates.
Bioinform.
Sebastian Deorowicz, Agnieszka Danek, Heng Li
2023 J jnl
Evaluation of haplotype-aware long-read error correction with hifieval.
Bioinform.
Yujie Guo, Xiaowen Feng, Heng Li
2023 J jnl
Galba: genome annotation with miniprot and AUGUSTUS.
BMC Bioinform.
Tomás Bruna, Heng Li, Joseph Guhlin, Daniel Honsel, Steffen Herbold, Mario Stanke, Natalia Nenasheva, Matthis Ebel, Lars Gabriel, Katharina Jasmin Hoff
2023 J jnl
Protein-to-genome alignment with miniprot.
Bioinform.
Heng Li
2023 J jnl
compleasm: a faster and more accurate reimplementation of BUSCO.
Bioinform.
Neng Huang, Heng Li
2021 J jnl
Bedtk: finding interval overlap with implicit interval tree.
Bioinform.
Heng Li, Jiazhen Rong
2021 J jnl
New strategies to improve minimap2 alignment accuracy.
Bioinform.
Heng Li
2021 J jnl
Real-time mapping of nanopore raw signals.
Bioinform.
Haowen Zhang, Haoran Li, Chirag Jain, Haoyu Cheng, Kin Fai Au, Heng Li, Srinivas Aluru
2020 J jnl
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph.
Bioinform.
Shilpa Garg, John Aach, Heng Li, Isaac Sebenius, Richard Durbin, George M. Church
2019 A conf
Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems.
IPDPS
Md. Vasimuddin, Sanchit Misra, Heng Li, Srinivas Aluru
2019 J jnl
Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems.
CoRR
Md. Vasimuddin, Sanchit Misra, Heng Li, Srinivas Aluru
2019 J jnl
Identifying centromeric satellites with dna-brnn.
Bioinform.
Heng Li
2018 J jnl
Minimap2: pairwise alignment for nucleotide sequences.
Bioinform.
Heng Li
2016 J jnl
BGT: efficient and flexible genotype query across many samples.
Bioinform.
Heng Li
2016 J jnl
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.
Bioinform.
Heng Li
2015 J jnl
BFC: correcting Illumina sequencing errors.
Bioinform.
Heng Li
2015 J jnl
FermiKit: assembly-based variant calling for Illumina resequencing data.
Bioinform.
Heng Li
2014 J jnl
Fast construction of FM-index for long sequence reads.
Bioinform.
Heng Li
2014 J jnl
Fast construction of FM-index for long sequence reads.
CoRR
Heng Li
2014 J jnl
Toward better understanding of artifacts in variant calling from high-coverage samples.
Bioinform.
Heng Li
2012 J jnl
Exploring single-sample SNP and INDEL calling with whole-genome
Bioinform.
Heng Li
2011 J jnl
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data.
Bioinform.
Heng Li
2011 J jnl
Improving SNP discovery by base alignment quality.
Bioinform.
Heng Li
2011 J jnl
Tabix: fast retrieval of sequence features from generic TAB-delimited files.
Bioinform.
Heng Li
2010 J jnl
A survey of sequence alignment algorithms for next-generation sequencing.
Briefings Bioinform.
Heng Li, Nils Homer
2010 J jnl
Evolutionary Transients in the Rice Transcriptome.
Genom. Proteom. Bioinform.
Jun Wang, Jianguo Zhang, Ruiqiang Li, Hongkun Zheng, Jun Li, Yong Zhang, Heng Li, Peixiang Ni, Songgang Li, Shengting Li, Jingqiang Wang, Dongyuan Liu, Jason E. McDermott, Ram Samudrala, Siqi Liu, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong
2010 J jnl
Fast and accurate long-read alignment with Burrows-Wheeler transform.
Bioinform.
Heng Li, Richard Durbin
2009 J jnl
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA.
Bioinform.
Kathryn E. Holt, Yik Y. Teo, Heng Li, Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill
2009 J jnl
Fast and accurate short read alignment with Burrows-Wheeler transform.
Bioinform.
Heng Li, Richard Durbin
2009 J jnl
The Sequence Alignment/Map format and SAMtools.
Bioinform.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor T. Marth, Gonçalo R. Abecasis, Richard Durbin
2008 J jnl
TreeFam: 2008 Update.
Nucleic Acids Res.
Jue Ruan, Heng Li, Zhongzhong Chen, Avril Coghlan, Lachlan James M. Coin, Yiran Guo, Jean-Karim Hériché, Yafeng Hu, Karsten Kristiansen, Ruiqiang Li, Tao Liu, Alan M. Moses, Junjie Qin, Søren Vang, Albert J. Vilella, Abel Ureta-Vidal, Lars Bolund, Jun Wang, Richard Durbin
2007 J jnl
A cross-species alignment tool (
BMC Bioinform.
Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Zheng, Gane Ka-Shu Wong, Jun Wang
2007 J jnl
PigGIS: Pig Genomic Informatics System.
Nucleic Acids Res.
Jue Ruan, Yiran Guo, Heng Li, Yafeng Hu, Fei Song, Xin Huang, Karsten Kristiansen, Lars Bolund, Jun Wang
2007 J jnl
Snap: an integrated SNP annotation platform.
Nucleic Acids Res.
Shengting Li, Lijia Ma, Heng Li, Søren Vang, Yafeng Hu, Lars Bolund, Jun Wang
2006 J jnl
TreeFam: a curated database of phylogenetic trees of animal gene families.
Nucleic Acids Res.
Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M. Coin, Jean-Karim Hériché, Lara Osmotherly, Ruiqiang Li, Tao Liu, Zhang Zhang, Lars Bolund, Gane Ka-Shu Wong, Wei-Mou Zheng, Paramvir S. Dehal, Jun Wang, Richard Durbin