Helen L. Johnson

14 papers Misc 2Journal 6Unranked 6
YearRankTypeTitle / Venue / Authors
2013 J jnl
Acquisition and evaluation of verb subcategorization resources for biomedicine.
J. Biomed. Informatics
Laura Rimell, Thomas Lippincott, Karin Verspoor, Helen L. Johnson, Anna Korhonen
2012 J jnl
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.
BMC Bioinform.
Karin Verspoor, Kevin Bretonnel Cohen, Arrick Lanfranchi, Colin Warner, Helen L. Johnson, Christophe Roeder, Jinho D. Choi, Christopher S. Funk, Yuriy Malenkiy, Miriam Eckert, Nianwen Xue, William A. Baumgartner Jr., Michael Bada, Martha Palmer, Lawrence E. Hunter
2011 J jnl
High-Precision Biological Event Extraction: Effects of System and of Data.
Comput. Intell.
K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Hannah J. Tipney, Lawrence Hunter
2010 J jnl
Exploring Species-Based Strategies for Gene Normalization.
IEEE ACM Trans. Comput. Biol. Bioinform.
Karin Verspoor, Christophe Roeder, Helen L. Johnson, K. Bretonnel Cohen, William A. Baumgartner Jr., Lawrence Hunter
2010 — conf
Leveraging Gene Ontology Annotations to Improve a Memory-Based Language Understanding System.
ICSC
Kevin M. Livingston, Helen L. Johnson, Karin Verspoor, Lawrence Hunter
2010 J jnl
The structural and content aspects of abstracts versus bodies of full text journal articles are different.
BMC Bioinform.
K. Bretonnel Cohen, Helen L. Johnson, Karin Verspoor, Christophe Roeder, Lawrence Hunter
2009 — conf
High-precision biological event extraction with a concept recognizer.
BioNLP@HLT-NAACL (Shared Task)
K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Lawrence Hunter
2008 — conf
Mining Protein-Protein Interactions from GeneRIFs with OpenDMAP.
BioLINK@ISMB/ECCB
Andrew D. Fox, William A. Baumgartner Jr., Helen L. Johnson, Lawrence E. Hunter, Donna K. Slonim
2008 J jnl
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.
BMC Bioinform.
Lawrence Hunter, Zhiyong Lu, James Firby, William A. Baumgartner Jr., Helen L. Johnson, Philip V. Ogren, K. Bretonnel Cohen
2007 Misc conf
A Fault Model for Ontology Mapping, Alignment, and Linking Systems.
Pacific Symposium on Biocomputing
Helen L. Johnson, K. Bretonnel Cohen, Lawrence Hunter
2006 — conf
Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering.
TREC
J. Gregory Caporaso, William A. Baumgartner Jr., Hyunmin Kim, Zhiyong Lu, Helen L. Johnson, Olga Medvedeva, Anna Lindemann, Lynne M. Fox, Elizabeth K. White, K. Bretonnel Cohen, Lawrence Hunter
2006 Misc conf
Evaluation of Lexical Methods for Detecting Relationships Between Concepts from Multiple Ontologies.
Pacific Symposium on Biocomputing
Helen L. Johnson, K. Bretonnel Cohen, William A. Baumgartner Jr., Zhiyong Lu, Michael Bada, Todd Kester, Hyunmin Kim, Lawrence Hunter
2006 — conf
Refactoring Corpora.
BioNLP@NAACL-HLT
Helen L. Johnson, William A. Baumgartner Jr., Martin Krallinger, K. Bretonnel Cohen, Lawrence Hunter
2005 — conf
Concept Recognition and the TREC Genomics Tasks.
TREC
J. Gregory Caporaso, William A. Baumgartner Jr., K. Bretonnel Cohen, Helen L. Johnson, Jesse Paquette, Lawrence Hunter