Heike Siebert

40 papers Journal 18Unranked 22
YearRankTypeTitle / Venue / Authors
2025 J jnl
Detection of dynamic communities in temporal networks with sparse data.
Appl. Netw. Sci.
Natasa Djurdjevac Conrad, Elisa Tonello, Johannes Zonker, Heike Siebert
2024 — conf
Uncovering Dynamic Structures Within Cyclic Attractors of Asynchronous Boolean Networks with Spectral Clustering.
CMSB
Maryam Yousefian, Elisa Tonello, Anna-Simone Frank, Heike Siebert, Susanna Röblitz
2023 J jnl
Node and edge control strategy identification via trap spaces in Boolean networks.
BMC Bioinform.
Laura Cifuentes Fontanals, Elisa Tonello, Heike Siebert
2022 J jnl
Control in Boolean Networks With Model Checking.
Frontiers Appl. Math. Stat.
Laura Cifuentes Fontanals, Elisa Tonello, Heike Siebert
2022 J jnl
Structure and behavior in Boolean monotonic model pools.
Biosyst.
Robert Schwieger, Heike Siebert
2020 J jnl
Basins of Attraction, Commitment Sets, and Phenotypes of Boolean Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hannes Klarner, Frederike Heinitz, Sarah Nee, Heike Siebert
2020 — conf
Classifier Construction in Boolean Networks Using Algebraic Methods.
CMSB
Robert Schwieger, Matías R. Bender, Heike Siebert, Christian Haase
2020 — conf
Control Strategy Identification via Trap Spaces in Boolean Networks.
CMSB
Laura Cifuentes Fontanals, Elisa Tonello, Heike Siebert
2019 J jnl
Boolean analysis of lateral inhibition.
CoRR
Elisa Tonello, Heike Siebert
2019 — conf
Designing Distributed Cell Classifier Circuits Using a Genetic Algorithm.
CMSB
Melania Nowicka, Heike Siebert
2019 J jnl
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis.
BMC Bioinform.
Denise Thiel, Natasa Djurdjevac Conrad, Evgenia Ntini, Ria X. Peschutter, Heike Siebert, Annalisa Marsico
2018 J jnl
Correspondence of Trap Spaces in Different Models of Bioregulatory Networks.
SIAM J. Appl. Dyn. Syst.
Robert Schwieger, Heike Siebert, Susanna Röblitz
2018 J jnl
Erratum to: Computing maximal and minimal trap spaces of Boolean networks.
Nat. Comput.
Hannes Klarner, Alexander Bockmayr, Heike Siebert
2017 — conf
Graph Representations of Monotonic Boolean Model Pools.
CMSB
Robert Schwieger, Heike Siebert
2017 J jnl
PyBoolNet: a python package for the generation, analysis and visualization of boolean networks.
Bioinform.
Hannes Klarner, Adam Streck, Heike Siebert
2016 J jnl
Data-driven optimizations for model checking of multi-valued regulatory networks.
Biosyst.
Adam Streck, Kirsten Thobe, Heike Siebert
2015 — conf
Analysing Cell Line Specific EGFR Signalling via Optimized Automata Based Model Checking.
CMSB
Adam Streck, Kirsten Thobe, Heike Siebert
2015 — conf
Comparative Statistical Analysis of Qualitative Parametrization Sets.
HSB
Adam Streck, Kirsten Thobe, Heike Siebert
2015 J jnl
Computing maximal and minimal trap spaces of Boolean networks.
Nat. Comput.
Hannes Klarner, Alexander Bockmayr, Heike Siebert
2015 J jnl
Logical-continuous modelling of post-translationally regulated bistability of curli fiber expression in Escherichia coli.
BMC Syst. Biol.
Kaveh Yousef, Adam Streck, Christof Schütte, Heike Siebert, Regine Hengge, Max von Kleist
2015 J jnl
Minimization and equivalence in multi-valued logical models of regulatory networks.
Nat. Comput.
Adam Streck, Therese Lorenz, Heike Siebert
2014 — conf
Computing Symbolic Steady States of Boolean Networks.
ACRI
Hannes Klarner, Alexander Bockmayr, Heike Siebert
2014 — conf
Equivalences in Multi-valued Asynchronous Models of Regulatory Networks.
ACRI
Adam Streck, Heike Siebert
2014 — conf
Model Integration and Crosstalk Analysis of Logical Regulatory Networks.
CMSB
Kirsten Thobe, Adam Streck, Hannes Klarner, Heike Siebert
2013 — conf
Bio-Logics: Logical Analysis of Bioregulatory Networks.
Programming Logics
Alexander Bockmayr, Heike Siebert
2013 J jnl
Preservation of dynamic properties in qualitative modeling frameworks for gene regulatory networks.
Biosyst.
Shahrad Jamshidi, Heike Siebert, Alexander Bockmayr
2012 — conf
Comparing Discrete and Piecewise Affine Differential Equation Models of Gene Regulatory Networks.
IPCAT
Shahrad Jamshidi, Heike Siebert, Alexander Bockmayr
2012 — conf
Parameter Identification and Model Ranking of Thomas Networks.
CMSB
Hannes Klarner, Adam Streck, David Safránek, Juraj Kolcák, Heike Siebert
2012 J jnl
Time Series Dependent Analysis of Unparametrized Thomas Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hannes Klarner, Heike Siebert, Alexander Bockmayr
2011 — conf
Parameter inference for asynchronous logical networks using discrete time series.
CMSB
Hannes Klarner, Heike Siebert, Alexander Bockmayr
2010 — conf
Stochasticity in reactions: a probabilistic Boolean modeling approach.
CMSB
Sven Twardziok, Heike Siebert, Alexander Heyl
2009 — conf
Analyzing various models of Circadian Clock and Cell Cycle coupling.
Formal Methods in Molecular Biology
Attila Csikász-Nagy, Adrien Fauré, Roberto Larcher, Paola Lecca, Ivan Mura, Ferenc Jordán, Alida Palmisano, Alessandro Romanel, Sean Sedwards, Heike Siebert, Sylvain Soliman, Denis Thieffry, Judit Zámborszky, Tommaso Mazza, Paolo Ballarini
2009 J jnl
Deriving Behavior of Boolean Bioregulatory Networks from Subnetwork Dynamics.
Math. Comput. Sci.
Heike Siebert
2009 — conf
Dynamical and Structural Modularity of Discrete Regulatory Networks
COMPMOD
Heike Siebert
2009 — conf
Symbolic Steady States and Dynamically Essential Subnetworks of Discrete Regulatory Networks.
Formal Methods in Molecular Biology
Heike Siebert
2008 — conf
Local Structure and Behavior of Boolean Bioregulatory Networks.
AB
Heike Siebert
2008 J jnl
Temporal constraints in the logical analysis of regulatory networks.
Theor. Comput. Sci.
Heike Siebert, Alexander Bockmayr
2007 — conf
Context Sensitivity in Logical Modeling with Time Delays.
CMSB
Heike Siebert, Alexander Bockmayr
2007 — conf
Relating Attractors and Singular Steady States in the Logical Analysis of Bioregulatory Networks.
AB
Heike Siebert, Alexander Bockmayr
2006 — conf
Incorporating Time Delays into the Logical Analysis of Gene Regulatory Networks.
CMSB
Heike Siebert, Alexander Bockmayr