Heejoon Chae

23 papers Journal 16Unranked 7
YearRankTypeTitle / Venue / Authors
2025 — conf
Cell-specific network-based cell type prediction via graph convolutional network using transcriptomics profiles.
ICMHI
Joung Min Choi, Heejoon Chae
2023 J jnl
meth-SemiCancer: a cancer subtype classification framework via semi-supervised learning utilizing DNA methylation profiles.
BMC Bioinform.
Joung Min Choi, Chaelin Park, Heejoon Chae
2023 J jnl
moBRCA-net: a breast cancer subtype classification framework based on multi-omics attention neural networks.
BMC Bioinform.
Joung Min Choi, Heejoon Chae
2021 J jnl
BioVLAB-Cancer-Pharmacogenomics: tumor heterogeneity and pharmacogenomics analysis of multi-omics data from tumor on the cloud.
Bioinform.
Sungjoon Park, Dohoon Lee, Youngkuk Kim, Sangsoo Lim, Heejoon Chae, Sun Kim
2021 J jnl
Cell Subtype Classification via Representation Learning Based on a Denoising Autoencoder for Single-Cell RNA Sequencing.
IEEE Access
Joungmin Choi, Je-Keun Rhee, Heejoon Chae
2021 J jnl
Correction to "A Non-Negative Matrix Factorization Based Framework for the Analysis of Multi-Class Time-Series Single-Cell RNA-Seq Data".
IEEE Access
Inuk Jung, Joungmin Choi, Heejoon Chae
2021 J jnl
Erratum to: Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations.
Briefings Bioinform.
Minsik Oh, Sungjoon Park, Sun Kim, Heejoon Chae
2021 — conf
IDEA: Integrating Divisive and Ensemble-Agglomerate hierarchical clustering framework for arbitrary shape data.
IEEE BigData
Hongryul Ahn, Inuk Jung, Heejoon Chae, Minsik Oh, Inyoung Kim, Sun Kim
2021 J jnl
Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations.
Briefings Bioinform.
Minsik Oh, Sungjoon Park, Sun Kim, Heejoon Chae
2020 J jnl
A Non-Negative Matrix Factorization-Based Framework for the Analysis of Multi-Class Time-Series Single-Cell RNA-Seq Data.
IEEE Access
Inuk Jung, Joungmin Choi, Heejoon Chae
2020 J jnl
methCancer-gen: a DNA methylome dataset generator for user-specified cancer type based on conditional variational autoencoder.
BMC Bioinform.
Joungmin Choi, Heejoon Chae
2019 J jnl
HTRgene: a computational method to perform the integrated analysis of multiple heterogeneous time-series data: case analysis of cold and heat stress response signaling genes in Arabidopsis.
BMC Bioinform.
Hongryul Ahn, Inuk Jung, Heejoon Chae, Dongwon Kang, Woosuk Jung, Sun Kim
2018 J jnl
BiSpark: a Spark-based highly scalable aligner for bisulfite sequencing data.
BMC Bioinform.
Seokjun Soe, Yoonjae Park, Heejoon Chae
2018 J jnl
Cloud-BS: A MapReduce-based bisulfite sequencing aligner on cloud.
J. Bioinform. Comput. Biol.
Joungmin Choi, Yoonjae Park, Sun Kim, Heejoon Chae
2018 — conf
HTRgene: Integrating Multiple Heterogeneous Time-series Data to Investigate Cold and Heat Stress Response Signaling Genes in Arabidopsis.
BIBM
Hongryul Ahn, Inuk Jung, Heejoon Chae, Dongwon Kang, Woosuk Jung, Sun Kim
2017 — conf
Integration of heterogeneous time series gene expression data by clustering on time dimension.
BigComp
Hongryul Ahn, Heejoon Chae, Woosuk Jung, Sun Kim
2016 J jnl
Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines.
BMC Syst. Biol.
Heejoon Chae, Sangseon Lee, Kenneth P. Nephew, Sun Kim
2015 J jnl
BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing data.
Bioinform.
Heejoon Chae, SungMin Rhee, Kenneth P. Nephew, Sun Kim
2013 J jnl
Bio and health informatics meets cloud : BioVLab as an example.
Health Inf. Sci. Syst.
Heejoon Chae, Inuk Jung, Hyungro Lee, Suresh Marru, Seong-Whan Lee, Sun Kim
2013 J jnl
Genome-Wide Analysis and Modeling of DNA methylation susceptibility in 30 Breast Cancer Cell Lines by using CPG Flanking Sequences.
J. Bioinform. Comput. Biol.
Jaehyun An, Kwangsoo Kim, SungMin Rhee, Heejoon Chae, Kenneth P. Nephew, Sun Kim
2011 — conf
BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis.
BIBM
Hyungro Lee, Youngik Yang, Heejoon Chae, Seungyoon Nam, Donghoon Choi, Patanachai Tangchaisin, Chathura Herath, Suresh Marru, Kenneth P. Nephew, Sun Kim
2011 — conf
Transitioning BioVLab cloud workbench to a science gateway.
TG
Suresh Marru, Heejoon Chae, Patanachai Tangchaisin, Sun Kim, Marlon E. Pierce, Kenneth P. Nephew
2010 — conf
EGGSlicer: predicting biologically meaningful gene sets from gene clusters using gene ontology information.
BCB
Heejoon Chae, Kwangmin Choi, Sun Kim, Haleh Ashki