Hebing Chen

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2026 J jnl
Prediction of gene expression levels in Saccharomyces cerevisiae based on chromatin accessibility using multiple machine learning models.
Comput. Biol. Chem.
Biyu Dong, Bin Hu, Peiheng Jia, Chao Ren, Pengzhen Hu, Guohang He, Song He, Hebing Chen, Yiming Lu, Yating Liang
2024 J jnl
Effectiveness of machine learning at modeling the relationship between Hi-C data and copy number variation.
Quant. Biol.
Yuyang Wang, Yu Sun, Zeyu Liu, Bijia Chen, Hebing Chen, Chao Ren, Xuanwei Lin, Pengzhen Hu, Peiheng Jia, Xiang Xu, Kang Xu, Ximeng Liu, Hao Li, Xiaochen Bo
2024 J jnl
SEPDB: a database of secreted proteins.
Database J. Biol. Databases Curation
Ruiqing Wang, Chao Ren, Tian Gao, Hao Li, Xiaochen Bo, Dahai Zhu, Dan Zhang, Hebing Chen, Yong Zhang
2024 J jnl
Stratifying TAD boundaries pinpoints focal genomic regions of regulation, damage, and repair.
Briefings Bioinform.
Bijia Chen, Chao Ren, Zhangyi Ouyang, Jingxuan Xu, Kang Xu, Yaru Li, Hejiang Guo, Xuemei Bai, Mengge Tian, Xiang Xu, Yuyang Wang, Hao Li, Xiaochen Bo, Hebing Chen
2023 J jnl
3D genomic organization in cancers.
Quant. Biol.
Junting Wang, Huan Tao, Hao Li, Xiaochen Bo, Hebing Chen
2022 J jnl
Inferring transcription factor regulatory networks from single-cell ATAC-seq data based on graph neural networks.
Nat. Mach. Intell.
Hao Li, Yu Sun, Hao Hong, Xin Huang, Huan Tao, Qiya Huang, Longteng Wang, Kang Xu, Jingbo Gan, Hebing Chen, Xiaochen Bo
2021 J jnl
Spatial density of open chromatin: an effective metric for the functional characterization of topologically associated domains.
Briefings Bioinform.
Shuai Jiang, Hao Li, Hao Hong, Guifang Du, Xin Huang, Yu Sun, Junting Wang, Huan Tao, Kang Xu, Cheng Li, Yang Chen, Hebing Chen, Xiaochen Bo
2020 J jnl
DeepHiC: A generative adversarial network for enhancing Hi-C data resolution.
PLoS Comput. Biol.
Hao Hong, Shuai Jiang, Hao Li, Guifang Du, Yu Sun, Huan Tao, Cheng Quan, Chenghui Zhao, Ruijiang Li, Wanying Li, Xiaoyao Yin, Yangchen Huang, Cheng Li, Hebing Chen, Xiaochen Bo
2020 J jnl
New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform.
Briefings Bioinform.
Hebing Chen, Zhuo Zhang, Shuai Jiang, Ruijiang Li, Wanying Li, Chenghui Zhao, Hao Hong, Xin Huang, Hao Li, Xiaochen Bo
2019 J jnl
A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data.
Briefings Bioinform.
Zhuo Zhang, Hao Li, Shuai Jiang, Ruijiang Li, Wanying Li, Hebing Chen, Xiaochen Bo
2019 J jnl
Stable H3K4me3 is associated with transcription initiation during early embryo development.
Bioinform.
Xin Huang, Xudong Gao, Wanying Li, Shuai Jiang, Ruijiang Li, Hao Hong, Chenghui Zhao, Pingkun Zhou, Hebing Chen, Xiaochen Bo, Hao Li
2017 J jnl
3DSNP: a database for linking human noncoding SNPs to their three-dimensional interacting genes.
Nucleic Acids Res.
Yiming Lu, Cheng Quan, Hebing Chen, Xiaochen Bo, Chenggang Zhang
2017 J jnl
Exploring spatially adjacent TFBS-clustered regions with Hi-C data.
Bioinform.
Hebing Chen, Shuai Jiang, Zhuo Zhang, Hao Li, Yiming Lu, Xiaochen Bo