He Zhang

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2023 J jnl
Algorithm for optimized mRNA design improves stability and immunogenicity.
Nat.
He Zhang, Liang Zhang, Ang Lin, Congcong Xu, Ziyu Li, Kaibo Liu, Boxiang Liu, Xiaopin Ma, Fanfan Zhao, Huiling Jiang, Chunxiu Chen, Haifa Shen, Hangwen Li, David H. Mathews, Yujian Zhang, Liang Huang
2023 J jnl
LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs.
CoRR
Sizhen Li, Ning Dai, He Zhang, Apoorv Malik, David H. Mathews, Liang Huang
2022 J jnl
LinearAlifold: Linear-Time Consensus Structure Prediction for RNA Alignments.
CoRR
Liang Zhang, Sizhen Li, He Zhang, David H. Mathews, Liang Huang
2022 J jnl
LinearCoFold and LinearCoPartition: Linear-Time Algorithms for Secondary Structure Prediction of Interacting RNA molecules.
CoRR
He Zhang, Sizhen Li, Liang Zhang, David H. Mathews, Liang Huang
2021 J jnl
LinearTurboFold: Linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2.
Proc. Natl. Acad. Sci. USA
Sizhen Li, He Zhang, Liang Zhang, Kaibo Liu, Boxiang Liu, David H. Mathews, Liang Huang
2021 J jnl
Using Relative Lines of Code to Guide Automated Test Generation for Python.
CoRR
Josie Holmes, Iftekhar Ahmed, Caius Brindescu, Rahul Gopinath, He Zhang, Alex Groce
2020 J jnl
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search.
CoRR
Liang Huang, He Zhang, Dezhong Deng, Kai Zhao, Kaibo Liu, David A. Hendrix, David H. Mathews
2020 J jnl
LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities.
Bioinform.
He Zhang, Liang Zhang, David H. Mathews, Liang Huang
2020 J jnl
Using Relative Lines of Code to Guide Automated Test Generation for Python.
ACM Trans. Softw. Eng. Methodol.
Josie Holmes, Iftekhar Ahmed, Caius Brindescu, Rahul Gopinath, He Zhang, Alex Groce
2019 J jnl
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search.
Bioinform.
Liang Huang, He Zhang, Dezhong Deng, Kai Zhao, Kaibo Liu, David A. Hendrix, David H. Mathews
2019 J jnl
LinearPartition: Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities.
CoRR
He Zhang, Liang Zhang, David H. Mathews, Liang Huang