Hatice Gulcin Ozer

14 papers C 1Journal 6Unranked 6
YearRankTypeTitle / Venue / Authors
2024 J jnl
SeedMatchR: identify off-target effects mediated by siRNA seed regions in RNA-seq experiments.
Bioinform.
Tareian A. Cazares, Richard E. Higgs, Jibo Wang, Hatice Gulcin Ozer
2022 J jnl
The Importance of Weakly Co-Evolving Residue Networks in Proteins is Revealed by Visual Analytics.
Frontiers Bioinform.
Sidharth Mohan, Hatice Gulcin Ozer, William C. Ray
2019 J jnl
BISR-RNAseq: an efficient and scalable RNAseq analysis workflow with interactive report generation.
BMC Bioinform.
Venkat Sundar Gadepalli, Hatice Gulcin Ozer, Ayse Selen Yilmaz, Maciej Pietrzak, Amy Webb
2019 — conf
Scaling R Shiny Apps to Multiple Concurrent Users in a Secured HPC Environment Using Open OnDemand.
PEARC
Eric Franz, Hatice Gulcin Ozer, Trey Dockendorf, Venkat Sundar Gadepalli, Amy Webb, Alan Chalker, Maciej Pietrzak, Morgan E. Rodgers, Douglas Johnson, David E. Hudak
2014 — conf
Removing Sequential Bottlenecks in Analysis of Next-Generation Sequencing Data.
IPDPS Workshops
Yi Wang, Gagan Agrawal, Hatice Gulcin Ozer, Kun Huang
2011 J jnl
Comparing Multiple Chip-Sequencing Experiments.
J. Bioinform. Comput. Biol.
Hatice Gulcin Ozer, Yi-Wen Huang, Jiejun Wu, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang
2010 J jnl
Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia.
BMC Bioinform.
Jie Zhang, Yang Xiang, Liya Ding, Kristin Keen-Circle, Tara Borlawsky, Hatice Gulcin Ozer, Ruoming Jin, Philip R. O. Payne, Kun Huang
2009 — conf
A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments.
BICoB
Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Hui-Ming Huang, Ümit V. Çatalyürek, Kun Huang
2009 — conf
Clinical Attribute Network for Chronic Lymphocytic Leukemia.
BIBM
Abhisek Kundu, Hatice Gulcin Ozer, Tara Borlawsky, Kristin C. Circle, Kun Huang, Philip R. O. Payne
2009 — conf
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research.
BIBM
Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç
2007 C conf
Informative Motifs in Protein Family Alignments.
WABI
Hatice Gulcin Ozer, William C. Ray
2006 J jnl
MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments.
Nucleic Acids Res.
Hatice Gulcin Ozer, William C. Ray
2005 — ch.
Clustering of eukaryotic orthologs based on sequence and Domain Similarities using the Markov Graph-Flow Algorithm.
Advances in Bioinformatics and Its Applications
Hatice Gulcin Ozer, Jingchun Chen, Fa Zhang, Bo Yuan
2005 — conf
Discovering biostructure constraints using VRML visualization.
SIGGRAPH Posters
William C. Ray, Hatice Gulcin Ozer