Hasindu Gamaarachchi

24 papers A* 1A 3Journal 16Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Leveraging basecaller's move table to generate a lightweight k-mer model for nanopore sequencing analysis.
Bioinform.
Hiruna Samarakoon, Yuk Kei Wan, Sri Parameswaran, Jonathan Göke, Hasindu Gamaarachchi, Ira W. Deveson
2025 J jnl
Realfreq: real-time base modification analysis for nanopore sequencing.
Bioinform.
Suneth Samarasinghe, Ira W. Deveson, Hasindu Gamaarachchi
2024 A conf
Accelerating Chaining in Genomic Analysis Using RISC- V Custom Instructions.
DATE
Kisaru Liyanage, Hasindu Gamaarachchi, Hassaan Saadat, Tuo Li, Hiruna Samarakoon, Sri Parameswaran
2024 J jnl
Interactive visualization of nanopore sequencing signal data with
Bioinform.
Hiruna Samarakoon, Kisaru Liyanage, James M. Ferguson, Sri Parameswaran, Hasindu Gamaarachchi, Ira W. Deveson
2024 A conf
SEA: Sign-Separated Accumulation Scheme for Resource-Efficient DNN Accelerators.
DATE
Jing Gong, Hassaan Saadat, Haris Javaid, Hasindu Gamaarachchi, David Taubman, Sri Parameswaran
2023 J jnl
Accelerated nanopore basecalling with SLOW5 data format.
Bioinform.
Hiruna Samarakoon, James M. Ferguson, Hasindu Gamaarachchi, Ira W. Deveson
2023 J jnl
ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Jing Gong, Hassaan Saadat, Hasindu Gamaarachchi, Haris Javaid, Xiaobo Sharon Hu, Sri Parameswaran
2023 J jnl
Cross Layer Design Using HW/SW Co-Design and HLS to Accelerate Chaining in Genomic Analysis.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Kisaru Liyanage, Hasindu Gamaarachchi, Roshan G. Ragel, Sri Parameswaran
2023 J jnl
DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing.
BMC Bioinform.
Anjana Senanayake, Hasindu Gamaarachchi, Damayanthi Herath, Roshan G. Ragel
2023 A* conf
Invited: Algorithms and Architectures for Accelerating Long Read Sequence Analysis.
DAC
Hasindu Gamaarachchi, Kisaru Liyanage, Sri Parameswaran
2022 J jnl
ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference.
CoRR
Jing Gong, Hassaan Saadat, Hasindu Gamaarachchi, Haris Javaid, Xiaobo Sharon Hu, Sri Parameswaran
2022 J jnl
Efficient Real-Time Selective Genome Sequencing on Resource-Constrained Devices.
CoRR
Po Jui Shih, Hassaan Saadat, Sri Parameswaran, Hasindu Gamaarachchi
2022 J jnl
InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses.
Bioinform.
James M. Ferguson, Hasindu Gamaarachchi, Thanh Nguyen, Alyne Gollon, Stephanie Tong, Chiara Aquilina-Reid, Rachel Bowen-James, Ira W. Deveson
2021 J jnl
Computer Architecture-Aware Optimisation of DNA Analysis Systems.
CoRR
Hasindu Gamaarachchi
2020 J jnl
Cache Friendly Optimisation of de Bruijn Graph Based Local Re-Assembly in Variant Calling.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hasindu Gamaarachchi, Arash Bayat, Bruno Gaëta, Sri Parameswaran
2020 — —
Computer Architecture-Aware Optimisation of DNA Analysis Systems.
Hasindu Gamaarachchi
2020 J jnl
GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis.
BMC Bioinform.
Hasindu Gamaarachchi, Wai Chun Lam, Gihan Jayatilaka, Hiruna Samarakoon, Jared T. Simpson, Martin A. Smith, Sri Parameswaran
2020 A conf
Seed-and-Vote based In-Memory Accelerator for DNA Read Mapping.
ICCAD
Ann Franchesca Laguna, Hasindu Gamaarachchi, Xunzhao Yin, Michael T. Niemier, Sri Parameswaran, Xiaobo Sharon Hu
2019 J jnl
SWARAM: Portable Energy and Cost Efficient Embedded System for Genomic Processing.
ACM Trans. Embed. Comput. Syst.
Ram Prasad Mohanty, Hasindu Gamaarachchi, Andrew J. Lambert, Sri Parameswaran
2018 J jnl
Power Analysis Based Side Channel Attack.
CoRR
Hasindu Gamaarachchi, Harsha Ganegoda
2015 — conf
Accelerating text-based plagiarism detection using GPUs.
ICIIS
M. A. C. Jiffriya, M. A. C. Akmal Jahan, Hasindu Gamaarachchi, Roshan G. Ragel
2015 — conf
Autonomic trust management in cloud-based and highly dynamic IoT applications.
Kaleidoscope
Suneth Namal, Hasindu Gamaarachchi, Gyu Myoung Lee, Tai-Won Um
2015 — conf
The A to Z of building a testbed for Power Analysis attacks.
ICIIS
Hasindu Gamaarachchi, Harsha Ganegoda, Roshan G. Ragel
2014 J jnl
Accelerating Correlation Power Analysis Using Graphics Processing Units.
CoRR
Hasindu Gamaarachchi, Roshan G. Ragel, Darshana Jayasinghe