Harel Weinstein

23 papers B 1C 2Journal 15Unranked 5
YearRankTypeTitle / Venue / Authors
2023 B conf
Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations.
e-Science
Harshita Sahni, Hector Carrillo-Cabada, Ekaterina D. Kots, Silvina Caíno-Lores, Jack Marquez, Ewa Deelman, Michel A. Cuendet, Harel Weinstein, Michela Taufer, Trilce Estrada
2023 — conf
Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and Annotation of Collective Variables.
PASC
Silvina Caíno-Lores, Michel A. Cuendet, Jack Marquez, Ekaterina D. Kots, Trilce Estrada, Ewa Deelman, Harel Weinstein, Michela Taufer
2021 J jnl
A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hector Carrillo-Cabada, Jeremy Benson, Asghar M. Razavi, Brianna Mulligan, Michel A. Cuendet, Harel Weinstein, Michela Taufer, Trilce Estrada
2021 J jnl
A lightweight method for evaluating
J. Comput. Sci.
Tu Mai Anh Do, Loïc Pottier, Silvina Caíno-Lores, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman
2020 — conf
A Novel Metric to Evaluate In Situ Workflows.
ICCS (1)
Tu Mai Anh Do, Loïc Pottier, Stephen Thomas, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman
2020 J jnl
Membrane lipids are both the substrates and a mechanistically responsive environment of TMEM16 scramblase proteins.
J. Comput. Chem.
George Khelashvili, Xiaolu Cheng, Maria E. Falzone, Milka Doktorova, Alessio Accardi, Harel Weinstein
2019 — conf
Characterizing In Situ and In Transit Analytics of Molecular Dynamics Simulations for Next-Generation Supercomputers.
eScience
Michela Taufer, Ewa Deelman, Stephen Thomas, Michael R. Wyatt II, Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Harel Weinstein, Michel A. Cuendet, Trilce Estrada
2018 — conf
Graphic Encoding of Macromolecules for Efficient High-Throughput Analysis.
BCB
Trilce Estrada, Jeremy Benson, Hector Carrillo-Cabada, Asghar M. Razavi, Michel A. Cuendet, Harel Weinstein, Ewa Deelman, Michela Taufer
2015 J jnl
AIM for Allostery: Using the Ising Model to Understand Information Processing and Transmission in Allosteric Biomolecular Systems.
Entropy
Michael V. LeVine, Harel Weinstein
2014 — conf
N-body Information Theory (NbIT) Analysis of Rigid-Body Dynamics in Intracellular Loop 2 of the 5-HT2A Receptor.
IWBBIO
Michael V. LeVine, Jose Manuel Perez-Aguilar, Harel Weinstein
2014 J jnl
NbIT - A New Information Theory-Based Analysis of Allosteric Mechanisms Reveals Residues that Underlie Function in the Leucine Transporter LeuT.
PLoS Comput. Biol.
Michael V. LeVine, Harel Weinstein
2012 J jnl
Ligand-Dependent Conformations and Dynamics of the Serotonin 5-HT
PLoS Comput. Biol.
Jufang Shan, George Khelashvili, Sayan Mondal, Ernest L. Mehler, Harel Weinstein
2010 C conf
Quantification and Analysis of Combination Drug Synergy in High-Throughput Transcriptome Studies.
BIBE
Zeynep H. Gümüs, Fernando Siso-Nadal, Ada Gjrezi, Paul McDonagh, Iya Khalil, Paraskevi Giannakakou, Harel Weinstein
2010 C conf
TRAC: A Platform for Structure-Function Studies of NSS-Proteins Integrates Information from Bioinformatics and Biomedical Literature.
BIBE
Lei Shi, Marko Srdanovic, Thijs Beuming, Lucy Skrabanek, Jonathan A. Javitch, Harel Weinstein
2007 J jnl
Modeling activated states of GPCRs: the rhodopsin template.
J. Comput. Aided Mol. Des.
Masha Y. Niv, Lucy Skrabanek, Marta Filizola, Harel Weinstein
2006 J jnl
Dynamic models of G-protein coupled receptor dimers: indications of asymmetry in the rhodopsin dimer from molecular dynamics simulations in a POPC bilayer.
J. Comput. Aided Mol. Des.
Marta Filizola, Simon X. Wang, Harel Weinstein
2006 J jnl
Modeling activated states of GPCRs: the rhodopsin template.
J. Comput. Aided Mol. Des.
Masha Y. Niv, Lucy Skrabanek, Marta Filizola, Harel Weinstein
2005 J jnl
PDZBase: a protein?Cprotein interaction database for PDZ-domains.
Bioinform.
Thijs Beuming, Lucy Skrabanek, Masha Y. Niv, Piali Mukherjee, Harel Weinstein
2004 J jnl
A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins.
Bioinform.
Thijs Beuming, Harel Weinstein
2003 J jnl
Batch mode generation of residue-based diagrams of proteins.
Bioinform.
Fabien Campagne, Emmanuel Bettler, Gert Vriend, Harel Weinstein
2003 J jnl
Building protein diagrams on the web with the residue-based diagram editor RbDe.
Nucleic Acids Res.
Lucy Skrabanek, Fabien Campagne, Harel Weinstein
2002 J jnl
Key issues in the computational simulation of GPCR function: representation of loop domains.
J. Comput. Aided Mol. Des.
Ernest L. Mehler, Xavier Periole, S. A. Hassan, Harel Weinstein
1997 J jnl
Brownian dynamics simulations of the reactions of hydrated electrons with components of DNAs and a DNA double-helix.
J. Comput. Chem.
Arnaud J. A. Soirat, Chung F. Wong, Roman Osman, Harel Weinstein