Hao Wu

33 papers Journal 27Unranked 5
YearRankTypeTitle / Venue / Authors
2026 J jnl
CEMUSA: a graph-based integrative metric for evaluating clusters in spatial transcriptomics.
Bioinform.
Jiaying Hu, Yihang Du, Suyang Hou, Yueyang Ding, Jinyan Li, Hao Wu, Xiaobo Sun
2025 J jnl
LEGEND: Identifying Co-expressed Genes in Multimodal Transcriptomic Sequencing Data.
Genom. Proteom. Bioinform.
Tao Deng, Mengqian Huang, Kaichen Xu, Yan Lu, Yucheng Xu, Siyu Chen, Nina Xie, Qiuyue Tao, Hao Wu, Xiaobo Sun
2025 J jnl
scDETECT: a novel statistical model accounting for cell type correlation in single-cell RNA-seq differential expression analysis.
Briefings Bioinform.
Yuhan Xu, Weiwei Zhang, Hao Wu
2024 — conf
Detecting and Subtyping Anomalous Single Cells with M2ASDA.
BCB
Kaichen Xu, Kainan Liu, Linjie Wang, Yueyang Ding, Yan Lu, Hao Wu, Xiaobo Sun
2024 — conf
MIXER: Identifying Co-expressed Genes in Multimodal Transcriptomic Sequencing Data.
BCB
Tao Deng, Mengqian Huang, Kaichen Xu, Yan Lu, Siyu Chen, Yucheng Xu, Nina Xie, Hao Wu, Xiaobo Sun
2024 J jnl
SCIntRuler: guiding the integration of multiple single-cell RNA-seq datasets with a novel statistical metric.
Bioinform.
Yue Lyu, Steven H. Lin, Hao Wu, Ziyi Li
2024 — conf
Spatiotemporal attention boosts calling of complicated variations from long reads' alignment data.
BCB
Ying Shi, Shifu Luo, Yi Pan, Hao Wu, Wenjian Wang, Jinyan Li
2024 — conf
Target-oriented Reference Construction for supervised cell type identification in scRNA-seq.
BIBM
Xin Wei, Wenjing Ma, Zhijin Wu, Hao Wu
2023 J jnl
A cofunctional grouping-based approach for non-redundant feature gene selection in unannotated single-cell RNA-seq analysis.
Briefings Bioinform.
Tao Deng, Siyu Chen, Ying Zhang, Yuanbin Xu, Da Feng, Hao Wu, Xiaobo Sun
2022 J jnl
A comprehensive comparison of supervised and unsupervised methods for cell type identification in single-cell RNA-seq.
Briefings Bioinform.
Xiaobo Sun, Xiaochu Lin, Ziyi Li, Hao Wu
2022 J jnl
Differential RNA methylation analysis for MeRIP-seq data under general experimental design.
Bioinform.
Zhenxing Guo, Andrew M. Shafik, Peng Jin, Hao Wu
2022 J jnl
EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing.
Bioinform.
Xin Wei, Ziyi Li, Hongkai Ji, Hao Wu
2021 — conf
A novel virtual drug screening pipeline with deep-leaning as core component identifies inhibitor of pancreatic alpha-amylase.
BIBM
Haiping Zhang, Tingting Zhang, Konda Mani Saravanan, Linbu Liao, Hao Wu, Haishan Zhang, Huiling Zhang, Yi Pan, Xuli Wu, Yanjie Wei
2021 J jnl
Accurate feature selection improves single-cell RNA-seq cell clustering.
Briefings Bioinform.
Kenong Su, Tianwei Yu, Hao Wu
2021 J jnl
Complete deconvolution of DNA methylation signals from complex tissues: a geometric approach.
Bioinform.
Weiwei Zhang, Hao Wu, Ziyi Li
2021 J jnl
Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing.
Bioinform.
Zhenxing Guo, Andrew M. Shafik, Peng Jin, Zhijin Wu, Hao Wu
2020 J jnl
A comprehensive review of computational prediction of genome-wide features.
Briefings Bioinform.
Tianlei Xu, Xiaoqi Zheng, Ben Li, Peng Jin, Zhaohui S. Qin, Hao Wu
2020 J jnl
Robust partial reference-free cell composition estimation from tissue expression.
Bioinform.
Ziyi Li, Zhenxing Guo, Ying Cheng, Peng Jin, Hao Wu
2020 J jnl
Simulation, power evaluation and sample size recommendation for single-cell RNA-seq.
Bioinform.
Kenong Su, Zhijin Wu, Hao Wu
2019 J jnl
Differential methylation analysis for bisulfite sequencing using DSS.
Quant. Biol.
Hao Feng, Hao Wu
2019 J jnl
Disease prediction by cell-free DNA methylation.
Briefings Bioinform.
Hao Feng, Peng Jin, Hao Wu
2019 J jnl
Dissecting differential signals in high-throughput data from complex tissues.
Bioinform.
Ziyi Li, Zhijin Wu, Peng Jin, Hao Wu
2018 J jnl
Two-phase differential expression analysis for single cell RNA-seq.
Bioinform.
Zhijin Wu, Yi Zhang, Michael L. Stitzel, Hao Wu
2017 J jnl
Accounting for tumor purity improves cancer subtype classification from DNA methylation data.
Bioinform.
Weiwei Zhang, Hao Feng, Hao Wu, Xiaoqi Zheng
2016 J jnl
Differential methylation analysis for BS-seq data under general experimental design.
Bioinform.
Yongseok Park, Hao Wu
2016 — ch.
Experimental Design and Power Calculation for RNA-seq Experiments.
Statistical Genomics
Zhijin Wu, Hao Wu
2016 J jnl
Measuring the spatial correlations of protein binding sites.
Bioinform.
Yingying Wei, Hao Wu
2015 J jnl
A novel statistical method for quantitative comparison of multiple ChIP-seq datasets.
Bioinform.
Li Chen, Chi Wang, Zhaohui S. Qin, Hao Wu
2015 J jnl
PROPER: comprehensive power evaluation for differential expression using RNA-seq.
Bioinform.
Hao Wu, Chi Wang, Zhijin Wu
2015 J jnl
Predicting tumor purity from methylation microarray data.
Bioinform.
Naiqian Zhang, Hua-Jun Wu, Weiwei Zhang, Jun Wang, Hao Wu, Xiaoqi Zheng
2010 J jnl
JAMIE: joint analysis of multiple ChIP-chip experiments.
Bioinform.
Hao Wu, Hongkai Ji
2007 J jnl
R/qtlbim: QTL with Bayesian Interval Mapping in experimental crosses.
Bioinform.
Brian S. Yandell, Tapan Mehta, Samprit Banerjee, Daniel Shriner, Ramprasad Venkataraman, Jee Young Moon, W. Whipple Neely, Hao Wu, Randy von Smith, Nengjun Yi
2003 J jnl
R/qtl: QTL Mapping in Experimental Crosses.
Bioinform.
Karl W. Broman, Hao Wu, Saunak Sen, Gary A. Churchill