Hao Sun

23 papers Journal 17Unranked 6
YearRankTypeTitle / Venue / Authors
2024 — conf
Integrated Analysis of Neural Network Accelerated Nanopore Selective Sequencing for CpG Islands in Prostate Cancer Research.
ICBBS
Xing Zhao, Tingting Xie, Peiyi Xu, Huating Wang, Hao Sun
2024 J jnl
NanoDeep: a deep learning framework for nanopore adaptive sampling on microbial sequencing.
Briefings Bioinform.
Yusen Lin, Yongjun Zhang, Hang Sun, Hang Jiang, Xing Zhao, Xiaojuan Teng, Jingxia Lin, Bowen Shu, Hao Sun, Yuhui Liao, Jiajian Zhou
2024 J jnl
Occlusion enhanced pan-cancer classification via deep learning.
BMC Bioinform.
Xing Zhao, Zigui Chen, Huating Wang, Hao Sun
2023 — conf
GENESO: A Framework for Pan-Cancer Classification and Marker Gene Discovery by Symmetrical Occlusion Method Using Deep Learning.
ICBBS
Xing Zhao, Huating Wang, Hao Sun
2021 J jnl
Large scale RNA-binding proteins/LncRNAs interaction analysis to uncover lncRNA nuclear localization mechanisms.
Briefings Bioinform.
Yile Huang, Yulong Qiao, Yu Zhao, Yuying Li, Jie Yuan, Jiajian Zhou, Hao Sun, Huating Wang
2021 J jnl
NAMS webserver: coding potential assessment and functional annotation of plant transcripts.
Briefings Bioinform.
Kun Sun, Huating Wang, Hao Sun
2020 J jnl
Msuite: A High-Performance and Versatile DNA Methylation Data-Analysis Toolkit.
Patterns
Kun Sun, Lishi Li, Li Ma, Yu Zhao, Lin Deng, Huating Wang, Hao Sun
2020 — conf
RNA binding proteins (RBPs) regulate lncRNA nuclear retention.
BIBM
Yile Huang, Yulong Qiao, Yu Zhao, Yingzhe Ding, Jie Yuan, Jiajian Zhou, Huating Wang, Hao Sun
2019 J jnl
SKmDB: an integrated database of next generation sequencing information in skeletal muscle.
Bioinform.
Jie Yuan, Jiajian Zhou, Huating Wang, Hao Sun
2018 J jnl
GeneCT: a generalizable cancerous status and tissue origin classifier for pan-cancer biopsies.
Bioinform.
Kun Sun, Jiguang Wang, Huating Wang, Hao Sun
2018 J jnl
lncFunTK: a toolkit for functional annotation of long noncoding RNAs.
Bioinform.
Jiajian Zhou, Yile Huang, Yingzhe Ding, Jie Yuan, Huating Wang, Hao Sun
2017 J jnl
BSviewer: a genotype-preserving, nucleotide-level visualizer for bisulfite sequencing data.
Bioinform.
Kun Sun, Fiona F. M. Lun, Peiyong Jiang, Hao Sun
2014 — conf
The Online Diagnosis System for sanger sequencing based genetic testing.
BigComp
Kun Sun, Yuet-Ping Yuen, Huating Wang, Hao Sun
2013 J jnl
Prediction of pre-miRNA with multiple stem-loops using pruning algorithm.
Comput. Biol. Medicine
Xiaofeng Song, Minghao Wang, Yi-Ping Phoebe Chen, Huating Wang, Ping Han, Hao Sun
2013 J jnl
YY1TargetDB: an integral information resource for Yin Yang 1 target loci.
Database J. Biol. Databases Curation
Andy M. Guo, Kun Sun, Xiaoxi Su, Huating Wang, Hao Sun
2011 — conf
Genome-wide identification of TF-miRNA regulatory networks in myogenesis.
BIBM Workshops
Leina Lu, Liang Zhou, Eric Z. Chen, Kun Sun, Peiyong Jiang, Susie Su, Lijun Wang, Hao Sun, Huating Wang
2011 J jnl
Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.
Nucleic Acids Res.
Hao Sun, Jiejun Wu, Priyankara Wikramasinghe, Sharmistha Pal, Ravi Gupta, Anirban Bhattacharyya, Francisco J. Agosto-Perez, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri
2010 — conf
Methy-Pipe: An integrated bioinformatics data analysis pipeline for whole genome methylome analysis.
BIBM Workshops
Peiyong Jiang, Xiaoxi Sun, Eric Z. Chen, Kun Sun, Rossa W. K. Chiu, Yuk Ming Dennis Lo, Hao Sun
2006 J jnl
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
Nucleic Acids Res.
Hao Sun, Saranyan K. Palaniswamy, Twyla T. Pohar, Victor X. Jin, Tim Hui-Ming Huang, Ramana V. Davuluri
2005 J jnl
OMGProm: a database of orthologous mammalian gene promoters.
Bioinform.
Saranyan K. Palaniswamy, Victor X. Jin, Hao Sun, Ramana V. Davuluri
2004 J jnl
HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development.
Nucleic Acids Res.
Twyla T. Pohar, Hao Sun, Ramana V. Davuluri
2004 J jnl
Java-based application framework for visualization of gene regulatory region annotations.
Bioinform.
Hao Sun, Ramana V. Davuluri
2003 J jnl
AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis
BMC Bioinform.
Ramana V. Davuluri, Hao Sun, Saranyan K. Palaniswamy, Nicole Matthews, Carlos Molina, Mike Kurtz, Erich Grotewold