Hao Lin

57 papers Journal 56Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
DPS-Tool: an online service platform for disease perturbation scoring.
Frontiers Comput. Sci.
Changchun Wu, Xue-Qin Xie, Ziru Huang, Hao Lin, Jian Huang
2024 J jnl
Attention is all you need: utilizing attention in AI-enabled drug discovery.
Briefings Bioinform.
Yang Zhang, Caiqi Liu, Mujiexin Liu, Tianyuan Liu, Hao Lin, Cheng-Bing Huang, Lin Ning
2024 J jnl
Detecting key genes relative expression orderings as biomarkers for machine learning-based intelligent screening and analysis of type 2 diabetes mellitus.
Expert Syst. Appl.
Xue-Qin Xie, Changchun Wu, Cai-Yi Ma, Dong Gao, Wei Sun, Jian Huang, Kejun Deng, Dan Yan, Hao Lin
2024 J jnl
E-MuLA: An Ensemble Multi-Localized Attention Feature Extraction Network for Viral Protein Subcellular Localization.
Inf.
Bakanina Kissanga Grace-Mercure, Hasan Zulfiqar, Shenghan Gao, Sophyani Banaamwini Yussif, Biffon Manyura Momanyi, Lin Ning, Hao Lin, Cheng-Bing Huang
2024 — conf
Muli-Task Dual-view Model for Drug Combination Analysis: In Vivo and In Vitro Perspectives.
BIBM
Yuhe Yang, Zhao-Yue Zhang, Xue-Qin Xie, Wei Su, Kejun Deng, Hao Lin
2024 J jnl
Predicting coronary heart disease in Chinese diabetics using machine learning.
Comput. Biol. Medicine
Cai-Yi Ma, Yamei Luo, Tian-Yu Zhang, Yu-Duo Hao, Xue-Qin Xie, Xiao-Wei Liu, Xiaolei Ren, Xiaolin He, Yu-Mei Han, Ke-Jun Deng, Dan Yan, Hui Yang, Hua Tang, Hao Lin
2023 J jnl
A comprehensive review of bioinformatics tools for chromatin loop calling.
Briefings Bioinform.
Li Liu, Kaiyuan Han, Huimin Sun, Lu Han, Dong Gao, Qilemuge Xi, Lirong Zhang, Hao Lin
2023 J jnl
A gender specific risk assessment of coronary heart disease based on physical examination data.
npj Digit. Medicine
Hui Yang, Yamei Luo, Cai-Yi Ma, Tian-Yu Zhang, Tao Zhou, Xiaolei Ren, Xiaolin He, Kejun Deng, Dan Yan, Hua Tang, Hao Lin
2023 J jnl
Identification of Key DNA methylation sites related to differentially expressed genes in Lung squamous cell carcinoma.
Comput. Biol. Medicine
Jie Gao, Yongxian Feng, Yan Yang, Yuetong Shi, Junjie Liu, Hao Lin, Lirong Zhang
2023 J jnl
iPADD: A Computational Tool for Predicting Potential Antidiabetic Drugs Using Machine Learning Algorithms.
J. Chem. Inf. Model.
Xiao-Wei Liu, Tian-Yu Shi, Dong Gao, Cai-Yi Ma, Hao Lin, Dan Yan, Ke-Jun Deng
2022 J jnl
A deep learning model to identify gene expression level using cobinding transcription factor signals.
Briefings Bioinform.
Lirong Zhang, Yanchao Yang, Lu Chai, Qianzhong Li, Junjie Liu, Hao Lin, Li Liu
2022 J jnl
Analysis and modeling of myopia-related factors based on questionnaire survey.
Comput. Biol. Medicine
Jianqiang Xiao, Mujiexin Liu, Qinlai Huang, Zijie Sun, Lin Ning, Junguo Duan, Siquan Zhu, Jian Huang, Hao Lin, Hui Yang
2022 J jnl
Detection of transcription factors binding to methylated DNA by deep recurrent neural network.
Briefings Bioinform.
Hongfei Li, Yue Gong, Yifeng Liu, Hao Lin, Guohua Wang
2022 J jnl
PSnoD: identifying potential snoRNA-disease associations based on bounded nuclear norm regularization.
Briefings Bioinform.
Zijie Sun, Qinlai Huang, Yuhe Yang, Shihao Li, Hao Lv, Yang Zhang, Hao Lin, Lin Ning
2022 J jnl
RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation.
Nucleic Acids Res.
Tianyu Cui, Yiying Dou, Puwen Tan, Zhen Ni, Tianyuan Liu, Duolin Wang, Yan Huang, Kaican Cai, Xiaoyang Zhao, Dong Xu, Hao Lin, Dong Wang
2022 J jnl
Towards a better prediction of subcellular location of long non-coding RNA.
Frontiers Comput. Sci.
Zhao-Yue Zhang, Zi-Jie Sun, Yu-He Yang, Hao Lin
2022 J jnl
iLoc-miRNA: extracellular/intracellular miRNA prediction using deep BiLSTM with attention mechanism.
Briefings Bioinform.
Zhao-Yue Zhang, Lin Ning, Xiucai Ye, Yu-He Yang, Yasunori Futamura, Tetsuya Sakurai, Hao Lin
2022 J jnl
iRice-MS: An integrated XGBoost model for detecting multitype post-translational modification sites in rice.
Briefings Bioinform.
Hao Lv, Yang Zhang, Jia-Shu Wang, Shi-Shi Yuan, Zi-Jie Sun, Fu-Ying Dao, Zheng-Xing Guan, Hao Lin, Ke-Jun Deng
2021 J jnl
A computational platform to identify origins of replication sites in eukaryotes.
Briefings Bioinform.
Fu-Ying Dao, Hao Lv, Hasan Zulfiqar, Hui Yang, Wei Su, Hui Gao, Hui Ding, Hao Lin
2021 J jnl
Deep-Kcr: accurate detection of lysine crotonylation sites using deep learning method.
Briefings Bioinform.
Hao Lv, Fu-Ying Dao, Zheng-Xing Guan, Hui Yang, Yan-Wen Li, Hao Lin
2021 J jnl
DeepYY1: a deep learning approach to identify YY1-mediated chromatin loops.
Briefings Bioinform.
Fu-Ying Dao, Hao Lv, Dan Zhang, Zi-Mei Zhang, Li Liu, Hao Lin
2021 J jnl
Design powerful predictor for mRNA subcellular location prediction in Homo sapiens.
Briefings Bioinform.
Zhao-Yue Zhang, Yu-He Yang, Hui Ding, Dong Wang, Wei Chen, Hao Lin
2021 J jnl
Risk Prediction of Diabetes: Big data mining with fusion of multifarious physical examination indicators.
Inf. Fusion
Hui Yang, Yamei Luo, Xiaolei Ren, Ming Wu, Xiaolin He, Bowen Peng, Kejun Deng, Dan Yan, Hua Tang, Hao Lin
2021 J jnl
iCarPS: a computational tool for identifying protein carbonylation sites by novel encoded features.
Bioinform.
Dan Zhang, Zhao-Chun Xu, Wei Su, Yu-He Yang, Hao Lv, Hui Yang, Hao Lin
2021 J jnl
iDHS-Deep: an integrated tool for predicting DNase I hypersensitive sites by deep neural network.
Briefings Bioinform.
Fu-Ying Dao, Hao Lv, Wei Su, Zi-Jie Sun, Qin-Lai Huang, Hao Lin
2020 J jnl
A comparison and assessment of computational method for identifying recombination hotspots in Saccharomyces cerevisiae.
Briefings Bioinform.
Hui Yang, Wuritu Yang, Fu-Ying Dao, Hao Lv, Hui Ding, Wei Chen, Hao Lin
2020 J jnl
DNA4mC-LIP: a linear integration method to identify N4-methylcytosine site in multiple species.
Bioinform.
Qiang Tang, Juanjuan Kang, Jiaqing Yuan, Hua Tang, Xianhai Li, Hao Lin, Jian Huang, Wei Chen
2020 J jnl
Evaluation of different computational methods on 5-methylcytosine sites identification.
Briefings Bioinform.
Hao Lv, Zi-Mei Zhang, Shi-Hao Li, Jiu-Xin Tan, Wei Chen, Hao Lin
2020 J jnl
VisFeature: a stand-alone program for visualizing and analyzing statistical features of biological sequences.
Bioinform.
Jun Wang, Pu-Feng Du, Xin-Yu Xue, Guang-Ping Li, Yuan-Ke Zhou, Wei Zhao, Hao Lin, Wei Chen
2019 J jnl
Identify origin of replication in Saccharomyces cerevisiae using two-step feature selection technique.
Bioinform.
Fu-Ying Dao, Hao Lv, Fang Wang, Chao-Qin Feng, Hui Ding, Wei Chen, Hao Lin
2019 J jnl
Identifying Sigma70 Promoters with Novel Pseudo Nucleotide Composition.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hao Lin, Zhi-Yong Liang, Hua Tang, Wei Chen
2019 J jnl
Predicting protein structural classes for low-similarity sequences by evaluating different features.
Knowl. Based Syst.
Xiao-Juan Zhu, Chao-Qin Feng, Hong-Yan Lai, Wei Chen, Hao Lin
2019 J jnl
RIscoper: a tool for RNA-RNA interaction extraction from the literature.
Bioinform.
Yang Zhang, Tianyuan Liu, Liqun Chen, Jinxurong Yang, Jiayi Yin, Yuncong Zhang, Zhixi Yun, Hao Xu, Lin Ning, Feng-Biao Guo, Yongshuai Jiang, Hao Lin, Dong Wang, Yan Huang, Jian Huang
2019 J jnl
i6mA-Pred: identifying DNA N6-methyladenine sites in the rice genome.
Bioinform.
Wei Chen, Hao Lv, Fulei Nie, Hao Lin
2019 J jnl
iRNAD: a computational tool for identifying D modification sites in RNA sequence.
Bioinform.
Zhao-Chun Xu, Peng-Mian Feng, Hui Yang, Wangren Qiu, Wei Chen, Hao Lin
2019 J jnl
iTerm-PseKNC: a sequence-based tool for predicting bacterial transcriptional terminators.
Bioinform.
Chao-Qin Feng, Zhao-Yue Zhang, Xiao-Juan Zhu, Yan Lin, Wei Chen, Hua Tang, Hao Lin
2018 J jnl
iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC.
Bioinform.
Zhen-Dong Su, Yan Huang, Zhao-Yue Zhang, Ya-Wei Zhao, Dong Wang, Wei Chen, Kuo-Chen Chou, Hao Lin
2018 J jnl
iRNA-2OM: A Sequence-Based Predictor for Identifying 2′-O-Methylation Sites in
J. Comput. Biol.
Hui Yang, Hao Lv, Hui Ding, Wei Chen, Hao Lin
2017 J jnl
Identify and analysis crotonylation sites in histone by using support vector machines.
Artif. Intell. Medicine
Wangren Qiu, Bi-Qian Sun, Hua Tang, Jian Huang, Hao Lin
2017 J jnl
Pro54DB: a database for experimentally verified sigma-54 promoters.
Bioinform.
Zhi-Yong Liang, Hong-Yan Lai, Huan Yang, Chang-Jian Zhang, Hui Yang, Huan-Huan Wei, Xin-Xin Chen, Ya-Wei Zhao, Zhen-Dong Su, Wen-Chao Li, En-Ze Deng, Hua Tang, Wei Chen, Hao Lin
2017 J jnl
RNALocate: a resource for RNA subcellular localizations.
Nucleic Acids Res.
Ting Zhang, Puwen Tan, Liqiang Wang, Nana Jin, Yana Li, Lin Zhang, Huan Yang, Zhenyu Hu, Lining Zhang, Chunyu Hu, Chunhua Li, Kun Qian, Changjian Zhang, Yan Huang, Kongning Li, Hao Lin, Dong Wang
2017 J jnl
iDNA4mC: identifying DNA N4-methylcytosine sites based on nucleotide chemical properties.
Bioinform.
Wei Chen, Hui Yang, Peng-Mian Feng, Hui Ding, Hao Lin
2016 J jnl
BDB: biopanning data bank.
Nucleic Acids Res.
Bifang He, Guoshi Chai, Yaocong Duan, Zhiqiang Yan, Liuyang Qiu, Huixiong Zhang, Zechun Liu, Qiang He, Ke Han, Beibei Ru, Feng-Biao Guo, Hui Ding, Hao Lin, Xianlong Wang, Nini Rao, Peng Zhou, Jian Huang
2016 J jnl
Predicting bacteriophage proteins located in host cell with feature selection technique.
Comput. Biol. Medicine
Hui Ding, Zhi-Yong Liang, Feng-Biao Guo, Jian Huang, Wei Chen, Hao Lin
2015 J jnl
PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions.
Bioinform.
Wei Chen, Xitong Zhang, Jordan Brooker, Hao Lin, Liqing Zhang, Kuo-Chen Chou
2014 J jnl
A two stages sparse SVM training.
Int. J. Mach. Learn. Cybern.
Ziqiang Li, Mingtian Zhou, Hao Lin, Haibo Pu
2014 J jnl
Phd7faster: Predicting Clones Propagating Faster from the pH.D.-7 phage Display peptide Library.
J. Bioinform. Comput. Biol.
Beibei Ru, Peter A. C. 't Hoen, Fulei Nie, Hao Lin, Feng-Biao Guo, Jian Huang
2014 J jnl
Training sparse SVM on the core sets of fitting-planes.
Neurocomputing
Ziqiang Li, Mingtian Zhou, Lijia Xu, Hao Lin, Haibo Pu
2014 J jnl
iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition.
Bioinform.
Shou-Hui Guo, En-Ze Deng, Liqin Xu, Hui Ding, Hao Lin, Wei Chen, Kuo-Chen Chou
2013 J jnl
Identification of Antioxidants from Sequence Information Using Naïve Bayes.
Comput. Math. Methods Medicine
Peng-Mian Feng, Hao Lin, Wei Chen
2013 J jnl
Naïve Bayes Classifier with Feature Selection to Identify Phage Virion Proteins.
Comput. Math. Methods Medicine
Peng-Mian Feng, Hui Ding, Wei Chen, Hao Lin
2013 J jnl
The rate of opening and closing of the DNA gate for topoisomerase II.
Theory Biosci.
Hui Ding, Hao Lin, Juan Feng
2012 J jnl
Identification of voltage-gated potassium channel subfamilies from sequence information using support vector machine.
Comput. Biol. Medicine
Wei Chen, Hao Lin
2012 J jnl
MimoDB 2.0: a mimotope database and beyond.
Nucleic Acids Res.
Jian Huang, Beibei Ru, Ping Zhu, Fulei Nie, Jun Yang, Xuyang Wang, Ping Dai, Hao Lin, Feng-Biao Guo, Nini Rao
2011 J jnl
Eukaryotic and prokaryotic promoter prediction using hybrid approach.
Theory Biosci.
Hao Lin, Qian-Zhong Li
2009 J jnl
Recognition of DNase I hypersensitive sites in multiple cell lines.
Int. J. Bioinform. Res. Appl.
Wei Chen, Liaofu Luo, Lirong Zhang, Hao Lin
2007 J jnl
Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components.
J. Comput. Chem.
Hao Lin, Qian-Zhong Li