Hao-Dong Xu

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2025 J jnl
Deciphering the MHC immunopeptidome of human cancers with Ligand.MHC atlas.
Briefings Bioinform.
Zhi Ran, Meilin Mu, Shaofeng Lin, Tao Wang, Jing Zeng, Lan Kuang, Kunqi Chen, Shengbao Suo, Kai Yuan, Hao-Dong Xu
2023 J jnl
Deep learning for detecting and elucidating human T-cell leukemia virus type 1 integration in the human genome.
Patterns
Hao-Dong Xu, Johnathan Jia, Hyun-Hwan Jeong, Zhongming Zhao
2022 J jnl
NetBCE: An Interpretable Deep Neural Network for Accurate Prediction of Linear B-cell Epitopes.
Genom. Proteom. Bioinform.
Hao-Dong Xu, Zhongming Zhao
2021 J jnl
Deep4mC: systematic assessment and computational prediction for DNA N4-methylcytosine sites by deep learning.
Briefings Bioinform.
Hao-Dong Xu, Peilin Jia, Zhongming Zhao
2021 J jnl
KinaseMD: kinase mutations and drug response database.
Nucleic Acids Res.
Ruifeng Hu, Hao-Dong Xu, Peilin Jia, Zhongming Zhao
2021 J jnl
mUSP: a high-accuracy map of the in situ crosstalk of ubiquitylation and SUMOylation proteome predicted via the feature enhancement approach.
Briefings Bioinform.
Hao-Dong Xu, Ru-Ping Liang, You-Gan Wang, Jian-Ding Qiu
2020 J jnl
6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes.
Bioinform.
Hao-Dong Xu, Ruifeng Hu, Peilin Jia, Zhongming Zhao
2020 J jnl
GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins.
Genom. Proteom. Bioinform.
Chenwei Wang, Hao-Dong Xu, Shaofeng Lin, Wankun Deng, Jiaqi Zhou, Ying Zhang, Ying Shi, Di Peng, Yu Xue
2020 J jnl
HybridSucc: A Hybrid-learning Architecture for General and Species-specific Succinylation Site Prediction.
Genom. Proteom. Bioinform.
Wanshan Ning, Hao-Dong Xu, Peiran Jiang, Han Cheng, Wankun Deng, Yaping Guo, Yu Xue
2019 J jnl
iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains.
Nucleic Acids Res.
Yaping Guo, Di Peng, Jiaqi Zhou, Shaofeng Lin, Chenwei Wang, Wanshan Ning, Hao-Dong Xu, Wankun Deng, Yu Xue
2018 J jnl
PTMD: A Database of Human Disease-associated Post-translational Modifications.
Genom. Proteom. Bioinform.
Hao-Dong Xu, Yongbo Wang, Shaofeng Lin, Wankun Deng, Di Peng, Qinghua Cui, Yu Xue
2018 J jnl
Predicting lysine-malonylation sites of proteins using sequence and predicted structural features.
J. Comput. Chem.
Ghazaleh Taherzadeh, Yuedong Yang, Hao-Dong Xu, Yu Xue, Alan Wee-Chung Liew, Yaoqi Zhou
2017 J jnl
Computational prediction of species-specific malonylation sites via enhanced characteristic strategy.
Bioinform.
Lina Wang, Shaoping Shi, Hao-Dong Xu, Ping-Ping Wen, Jian-Ding Qiu
2016 J jnl
Accurate
Bioinform.
Ping-Ping Wen, Shaoping Shi, Hao-Dong Xu, Lina Wang, Jian-Ding Qiu
2015 J jnl
Proteomic analysis and prediction of human phosphorylation sites in subcellular level reveal subcellular specificity.
Bioinform.
Xiang Chen, Shao-Ping Shi, Sheng-Bao Suo, Hao-Dong Xu, Jian-Ding Qiu
2015 J jnl
SuccFind: a novel succinylation sites online prediction tool via enhanced characteristic strategy.
Bioinform.
Hao-Dong Xu, Shao-Ping Shi, Ping-Ping Wen, Jian-Ding Qiu