Hans J. Johnson

55 papers B 17Journal 23Unranked 15

Year	Rank	Type	Title / Venue / Authors
2023	—	`conf`	Leveraging High-Quality Research Data for Ischemic Stroke Lesion Segmentation on Clinical Data. ISBI Michal Brzus, Aaron D. Boes, Joel Bruss, Hans J. Johnson
2023	B	`conf`	Novel application of the attention mechanism on medical image harmonization. Image Processing Xing Yao, Ange Lou, Hao Li, Dewei Hu, Daiwei Lu, Han Liu, Jiacheng Wang, Zachary A. Stoebner, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2023	J	`jnl`	PigSNIPE: Scalable Neuroimaging Processing Engine for Minipig MRI. Algorithms Michal Brzus, Kevin Knoernschild, Jessica C. Sieren, Hans J. Johnson
2022	B	`conf`	Human brain extraction with deep learning. Image Processing Hao Li, Qibang Zhu, Dewei Hu, Manasvi R. Gunnala, Hans J. Johnson, Omar Sherbini, Francesco Gavazzi, Russell D'Aiello, Adeline Vanderver, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2022	J	`jnl`	MONAI: An open-source framework for deep learning in healthcare. CoRR M. Jorge Cardoso, Wenqi Li, Richard Brown, Nic Ma, Eric Kerfoot, Yiheng Wang, Benjamin Murray, Andriy Myronenko, Can Zhao, Dong Yang, Vishwesh Nath, Yufan He, Ziyue Xu, Ali Hatamizadeh, Wentao Zhu, Yun Liu, Mingxin Zheng, Yucheng Tang, Isaac Yang, Michael Zephyr, Behrooz Hashemian, Sachidanand Alle, Mohammad Zalbagi Darestani, Charlie Budd, Marc Modat, Tom Vercauteren, Guotai Wang, Yiwen Li, Yipeng Hu, Yunguan Fu, Benjamin Gorman, Hans J. Johnson, Brad W. Genereaux, Barbaros S. Erdal, Vikash Gupta, Andres Diaz-Pinto, Andre Dourson, Lena Maier-Hein, Paul F. Jaeger, Michael Baumgartner, Jayashree Kalpathy-Cramer, Mona Flores, Justin S. Kirby, Lee A. D. Cooper, Holger R. Roth, Daguang Xu, David Bericat, Ralf Floca, S. Kevin Zhou, Haris Shuaib, Keyvan Farahani, Klaus H. Maier-Hein, Stephen R. Aylward, Prerna Dogra, Sébastien Ourselin, Andrew Feng
2022	B	`conf`	Multi-agent reinforcement learning pipeline for anatomical landmark detection in minipigs. Image Processing Michal Brzus, Alexander B. Powers, Kevin Knoernschild, Jessica C. Sieren, Hans J. Johnson
2022	—	`conf`	Self-supervised Test-Time Adaptation for Medical Image Segmentation. MLCN@MICCAI Hao Li, Han Liu, Dewei Hu, Jiacheng Wang, Hans J. Johnson, Omar Sherbini, Francesco Gavazzi, Russell D'Aiello, Adeline Vanderver, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2021	B	`conf`	Longitudinal subcortical segmentation with deep learning. Image Processing Hao Li, Huahong Zhang, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2021	B	`conf`	MRI subcortical segmentation in neurodegeneration with cascaded 3D CNNs. Image Processing Hao Li, Huahong Zhang, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2020	J	`jnl`	A predictive model for kidney transplant graft survival using machine learning. CoRR Eric S. Pahl, W. Nick Street, Hans J. Johnson, Alan I. Reed
2020	—	`conf`	Generalizing MRI Subcortical Segmentation to Neurodegeneration. MLCN/RNO-AI@MICCAI Hao Li, Huahong Zhang, Dewei Hu, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2020	—	`conf`	Patch-Based Abnormality Maps for Improved Deep Learning-Based Classification of Huntington's Disease. MICCAI (7) Kilian Hett, Rémi Giraud, Hans J. Johnson, Jane S. Paulsen, Jeffrey D. Long, Ipek Oguz
2020	—	`conf`	Robust Automatic Multiple Landmark Detection. ISBI Arjit Jain, Alexander Powers, Hans J. Johnson
2020	—	`conf`	Tensor-Based Grading: A Novel Patch-Based Grading Approach for the Analysis Of Deformation Fields in Huntington's Disease. ISBI Kilian Hett, Hans J. Johnson, Pierrick Coupé, Jane S. Paulsen, Jeffrey D. Long, Ipek Oguz
2020	J	`jnl`	Tensor-Based Grading: A Novel Patch-Based Grading Approach for the Analysis of Deformation Fields in Huntington's Disease. CoRR Kilian Hett, Hans J. Johnson, Pierrick Coupé, Jane S. Paulsen, Jeffrey D. Long, Ipek Oguz
2019	J	`jnl`	Correction to: SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research. J. Digit. Imaging Ziv Yaniv, Bradley C. Lowekamp, Hans J. Johnson, Richard Beare
2019	—	`conf`	Ensemble Modeling of Neurocognitive Performance Using MRI-Derived Brain Structure Volumes. ABCD-NP@MICCAI Leo Brueggeman, Tanner Koomar, Yongchao Huang, Brady Hoskins, Tien Tong, James Kent, Ethan Bahl, Charles E. Johnson, Alexander Powers, Douglas R. Langbehn, Jatin G. Vaidya, Hans J. Johnson, Jacob J. Michaelson
2018	B	`conf`	ELM-SOM: A Continuous Self-Organizing Map for Visualization. IJCNN Renjie Hu, Venous Roshdibenam, Hans J. Johnson, Emil Eirola, Anton Akusok, Yoan Miche, Kaj-Mikael Björk, Amaury Lendasse
2018	J	`jnl`	Robust automated constellation-based landmark detection in human brain imaging. NeuroImage Ali Ghayoor, Jatin G. Vaidya, Hans J. Johnson
2018	J	`jnl`	SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research. J. Digit. Imaging Ziv Yaniv, Bradley C. Lowekamp, Hans J. Johnson, Richard Beare
2018	J	`jnl`	Whole-Brain Connectivity in a Large Study of Huntington's Disease Gene Mutation Carriers and Healthy Controls. Brain Connect. Flor A. Espinoza, Jessica A. Turner, Victor M. Vergara, Robyn L. Miller, Eva Mennigen, Jingyu Liu, Maria B. Misiura, Jennifer Ciarochi, Hans J. Johnson, Jeffrey D. Long, Henry Jeremy Bockholt, Vincent A. Magnotta, Jane S. Paulsen, Vince D. Calhoun
2017	—	`conf`	Brute-force Missing Data Extreme Learning Machine for Predicting Huntington's Disease. PETRA Anton Akusok, Emil Eirola, Kaj-Mikael Björk, Yoan Miché, Hans J. Johnson, Amaury Lendasse
2017	B	`conf`	Subject-specific longitudinal shape analysis by coupling spatiotemporal shape modeling with medial analysis. Image Processing Sungmin Hong, James Fishbaugh, Morteza Rezanejad, Kaleem Siddiqi, Hans J. Johnson, Jane S. Paulsen, Eun Young Kim, Guido Gerig
2016	J	`jnl`	An Open-Source Label Atlas Correction Tool and Preliminary Results on Huntingtons Disease Whole-Brain MRI Atlases. Frontiers Neuroinformatics Jessica L. Forbes, Regina E. Y. Kim, Jane S. Paulsen, Hans J. Johnson
2016	—	`conf`	Bayesian covariate selection in mixed-effects models for longitudinal shape analysis. ISBI Prasanna Muralidharan, James Fishbaugh, Eun Young Kim, Hans J. Johnson, Jane S. Paulsen, Guido Gerig, P. Thomas Fletcher
2016	—	`conf`	Comparative study of multimodal intra-subject image registration methods on a publicly available database. Biomedical Applications in Molecular, Structural, and Functional Imaging Mohammad Saleh Miri, Ali Ghayoor, Hans J. Johnson, Milan Sonka
2016	—	`conf`	Population Shape Collapse in Large Deformation Registration of MR Brain Images. CVPR Workshops Wei Shao, Gary E. Christensen, Hans J. Johnson, Joo Hyun Song, Oguz C. Durumeric, Casey P. Johnson, Joseph J. Shaffer, Vincent A. Magnotta, Jess G. Fiedorowicz, John A. Wemmie
2016	B	`conf`	Tissue classification of large-scale multi-site MR data using fuzzy k-nearest neighbor method. Image Processing Ali Ghayoor, Jane S. Paulsen, Regina E. Y. Kim, Hans J. Johnson
2015	—	`conf`	Efficient and Extensible Workflow: Reliable Whole Brain Segmentation for Large-Scale, Multi-center Longitudinal Human MRI Analysis Using High Performance/Throughput Computing Resources. CLIP@MICCAI Regina E. Y. Kim, Peg Nopoulos, Jane S. Paulsen, Hans J. Johnson
2015	J	`jnl`	Neuroinformatics and the The Insight ToolKit. Frontiers Neuroinformatics Brian B. Avants, Hans J. Johnson, Nicholas J. Tustison
2014	J	`jnl`	Correction of inter-scanner and within-subject variance in structural MRI based automated diagnosing. NeuroImage Daniel Kostro, Ahmed Abdulkadir, Alexandra Durr, Raymund Roos, Blair R. Leavitt, Hans J. Johnson, David M. Cash, Sarah J. Tabrizi, Rachael I. Scahill, Olaf Ronneberger, Stefan Klöppel
2014	J	`jnl`	DTIPrep: quality control of diffusion-weighted images. Frontiers Neuroinformatics Ipek Oguz, Mahshid Farzinfar, Joy T. Matsui, François Budin, Zhexing Liu, Guido Gerig, Hans J. Johnson, Martin Andreas Styner
2014	—	`conf`	Diffeomorphic Shape Trajectories for Improved Longitudinal Segmentation and Statistics. MICCAI (3) Prasanna Muralidharan, James Fishbaugh, Hans J. Johnson, Stanley Durrleman, Jane S. Paulsen, Guido Gerig, P. Thomas Fletcher
2013	B	`conf`	Development of a novel constellation based landmark detection algorithm. Image Processing Ali Ghayoor, Jatin G. Vaidya, Hans J. Johnson
2013	J	`jnl`	Robust multi-site MR data processing: iterative optimization of bias correction, tissue classification, and registration. Frontiers Neuroinformatics Eun Young Kim, Hans J. Johnson
2013	B	`conf`	UNC-Utah NA-MIC DTI framework: atlas based fiber tract analysis with application to a study of nicotine smoking addiction. Image Processing Audrey R. Verde, Jean-Baptiste Berger, Aditya Gupta, Mahshid Farzinfar, Adrien Kaiser, Vicki W. Chanon, Charlotte A. Boettiger, Hans J. Johnson, Joy T. Matsui, Anuja Sharma, Casey Goodlett, Yundi Shi, Hongtu Zhu, Guido Gerig, Sylvain Gouttard, Clement Vachet, Martin Styner
2013	J	`jnl`	UNC-Utah NA-MIC framework for DTI fiber tract analysis. Frontiers Neuroinformatics Audrey R. Verde, François Budin, Jean-Baptiste Berger, Aditya Gupta, Mahshid Farzinfar, Adrien Kaiser, Mihye Ahn, Hans J. Johnson, Joy T. Matsui, Heather Cody Hazlett, Anuja Sharma, Casey Goodlett, Yundi Shi, Sylvain Gouttard, Clement Vachet, Joseph Piven, Hongtu Zhu, Guido Gerig, Martin Andreas Styner
2012	—	`conf`	A Unified Image Registration Framework for ITK. WBIR Brian B. Avants, Nicholas J. Tustison, Gang Song, Baohua Wu, Michael Stauffer, Matthew McCormick, Hans J. Johnson, James C. Gee
2012	J	`jnl`	MultiCenter Reliability of Diffusion Tensor Imaging. Brain Connect. Vincent Magnotta, Joy T. Matsui, Dawei Liu, Hans J. Johnson, Jeffrey D. Long, Bradley D. Bolster Jr., Bryon A. Mueller, Kelvin O. Lim, Susumu Mori, Karl G. Helmer, Jessica A. Turner, Sarah A. J. Reading, Mark J. Lowe, Elizabeth H. Aylward, Laura A. Flashman, Greg Bonett, Jane S. Paulsen
2011	J	`jnl`	Fully automated analysis using BRAINS: AutoWorkup. NeuroImage Ronald Pierson, Hans J. Johnson, Gregory Harris, Helen Keefe, Jane S. Paulsen, Nancy Andreasen, Vincent Magnotta
2010	B	`conf`	Multi-structure segmentation of multi-modal brain images using artificial neural networks. Image Processing Eun Young Kim, Hans J. Johnson
2009	B	`conf`	Maximize uniformity summation heuristic (MUSH): a highly accurate simple method for intracranial delineation. Image Processing Ronald Pierson, Gregory Harris, Hans J. Johnson, Steve Dunn, Vincent A. Magnotta
2008	J	`jnl`	Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures. NeuroImage Stephanie Powell, Vincent Magnotta, Hans J. Johnson, Vamsi K. Jammalamadaka, Ronald Pierson, Nancy Andreasen
2006	B	`conf`	Automated brain segmentation using neural networks. Image Processing Stephanie Powell, Vincent Magnotta, Hans J. Johnson, Nancy Andreasen
2006	J	`jnl`	Synthesizing average 3D anatomical shapes. NeuroImage Gary E. Christensen, Hans J. Johnson, Michael W. Vannier
2003	J	`jnl`	Invertibility and transitivity analysis for nonrigid image registration. J. Electronic Imaging Gary E. Christensen, Hans J. Johnson
2003	J	`jnl`	Retrospective Evaluation of Inter-subject Brain Registration. IEEE Trans. Medical Imaging Pierre Hellier, Christian Barillot, Isabelle Corouge, Bernard Gibaud, Georges Le Goualher, D. Louis Collins, Alan C. Evans, Grégoire Malandain, Nicholas Ayache, Gary E. Christensen, Hans J. Johnson
2003	J	`jnl`	Subcortical, cerebellar, and magnetic resonance based consistent brain image registration. NeuroImage Vincent A. Magnotta, Henry Jeremy Bockholt, Hans J. Johnson, Gary E. Christensen, Nancy C. Andreasen
2002	J	`jnl`	Consistent Landmark and Intensity-based Image Registration. IEEE Trans. Medical Imaging Hans J. Johnson, Gary E. Christensen
2001	J	`jnl`	Consistent Image Registration. IEEE Trans. Medical Imaging Gary E. Christensen, Hans J. Johnson
2001	B	`conf`	Evaluating template bias when synthesizing population averages. Image Processing Blake L. Carlson, Gary E. Christensen, Hans J. Johnson, Michael W. Vannier
2001	—	`conf`	Landmark and Intensity-Based, Consistent Thin-Plate Spline Image Registration. IPMI Hans J. Johnson, Gary E. Christensen
2000	B	`conf`	Validation of probabilistic anatomical shape atlases. Image Processing Hans J. Johnson, Gary E. Christensen, Jeffrey L. Marsh, Michael W. Vannier
1999	B	`conf`	Midsagittal surface measurement of the head: an assessment of craniofacial asymmetry. Image Processing Gary E. Christensen, Hans J. Johnson, Tron A. Darvann, Nuno V. Hermann, Jeffrey L. Marsh
1999	B	`conf`	Synthesizing average 3D anatomical shapes using deformable templates. Image Processing Gary E. Christensen, Hans J. Johnson, John W. Haller, Jenny Melloy, Michael W. Vannier, Jeffrey L. Marsh