Hannah Carter

15 papers Misc 4Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2025 — conf
Lock-in Thermography Characterization of Photothermal Transparent Thin Films.
I2MTC
Gabriella Butler, Hannah Carter, Dardan Bajrami, Sagar Shrestha, Donglu Shi, Mathias Bonmarin
2024 J jnl
GRIEVOUS: your command-line general for resolving cross-dataset genotype inconsistencies.
Bioinform.
James V. Talwar, Adam R. Klie, Meghana S. Pagadala, Hannah Carter
2024 J jnl
The receiver operating characteristic curve accurately assesses imbalanced datasets.
Patterns
Eve Richardson, Raphael Trevizani, Jason A. Greenbaum, Hannah Carter, Morten Nielsen, Bjoern Peters
2023 J jnl
Predictive analyses of regulatory sequences with EUGENe.
Nat. Comput. Sci.
Adam R. Klie, David Laub, James V. Talwar, Hayden Stites, Tobias Jores, Joe J. Solvason, Emma K. Farley, Hannah Carter
2023 J jnl
The Cancer Epitope Database and Analysis Resource (CEDAR).
Nucleic Acids Res.
Zeynep Kosaloglu-Yalçin, Nina Blazeska, Randi Vita, Hannah Carter, Morten Nielsen, Stephen Schoenberger, Alessandro Sette, Bjoern Peters
2021 J jnl
Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition.
Database J. Biol. Databases Curation
Adam R. Klie, Brian Tsui, Shamim Mollah, Dylan Skola, Michelle Dow, Chun-Nan Hsu, Hannah Carter
2019 Misc conf
Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival.
PSB
Rachel M. Pyke, Raphael Genolet, Alexandre Harari, George Coukos, David Gfeller, Hannah Carter
2019 Misc conf
Extracting allelic read counts from 250, 000 human sequencing runs in Sequence Read Archive.
PSB
Brian Tsui, Michelle Dow, Dylan Skola, Hannah Carter
2019 J jnl
Rare variant phasing using paired tumor: normal sequence data.
BMC Bioinform.
Alexandra R. Buckley, Trey Ideker, Hannah Carter, Nicholas J. Schork
2018 Misc conf
Erratum: Identifying mutation specific cancer pathways using a structurally resolved protein interaction network.
PSB
Billur Engin, Matan Hofree, Hannah Carter
2015 Misc conf
Identifying Mutation Specific Cancer Pathways Using a Structurally Resolved Protein Interaction Network.
Pacific Symposium on Biocomputing
Billur Engin, Matan Hofree, Hannah Carter
2014 J jnl
A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing.
PLoS Comput. Biol.
Yun-Ching Chen, Christopher Douville, Cheng Wang, Noushin Niknafs, Grace H. T. Yeo, Violeta Beleva Guthrie, Hannah Carter, Peter D. Stenson, David N. Cooper, Biao Li, Sean D. Mooney, Rachel Karchin
2013 J jnl
CRAVAT: cancer-related analysis of variants toolkit.
Bioinform.
Christopher Douville, Hannah Carter, Rick Kim, Noushin Niknafs, Mark Diekhans, Peter D. Stenson, David N. Cooper, Michael C. Ryan, Rachel Karchin
2011 J jnl
CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer.
Bioinform.
Wing Chung Wong, Dewey Kim, Hannah Carter, Mark Diekhans, Michael C. Ryan, Rachel Karchin
2009 J jnl
MODBASE, a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res.
Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali