Han Zhang

52 papers Misc 1Journal 40Unranked 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
Pattern Recognit.
Han Zhang, Huan Wang, Mingjing Han
2026 J jnl
CoRR
Han Zhang, Guo-Hua Yuan, Chaohao Yuan, Tingyang Xu, Tian Bian, Hong Cheng, Wenbing Huang, Deli Zhao, Yu Rong
2025 J jnl
Bioinform.
Chuanze Kang, Zonghuan Liu, Han Zhang
2025 J jnl
Inf. Fusion
Xiongwen Quan, Guangyao Hou, Wenya Yin, Han Zhang
2025 J jnl
Inf. Fusion
Han Zhang, Xuening Bai, Guangyao Hou, Xiongwen Quan
2025 J jnl
CoRR
Haozhe Xiang, Han Zhang, Yu Cheng, Xiongwen Quan, Wanwan Huang
2025 conf
BIBM
Weizhen Gu, Han Zhang, Mingjing Han
2024 J jnl
IEEE J. Biomed. Health Informatics
Chuanze Kang, Han Zhang, Yanbin Yin
2024 J jnl
Comput. Biol. Medicine
Minghe Li, Huike Guo, Keao Wang, Chuanze Kang, Yanbin Yin, Han Zhang
2024 J jnl
Bioinform.
Xiangxin Zhan, Yanbin Yin, Han Zhang
2024 J jnl
Knowl. Based Syst.
Mingjing Han, Han Zhang
2024 J jnl
Biomed. Signal Process. Control.
Wei Wang, Xiongwen Quan, Wanwan Huang, Yu Cheng, Han Zhang
2024 conf
BIBM
Yuanxiang Jiang, Mingjing Han, Yanbin Yin, Han Zhang
2023 J jnl
Comput. Biol. Medicine
Wanwan Huang, Han Zhang, Huike Guo, Wei Li, Xiongwen Quan, Yuzhi Zhang
2023 J jnl
Knowl. Based Syst.
Qingqing Zhao, Han Zhang, Mengyao He, Wei Li, Chuanze Kang, Mingjing Han
2023 J jnl
Neurocomputing
Mengyao He, Qingqing Zhao, Han Zhang, Chuanze Kang, Wei Li, Mingjing Han
2023 conf
BIBM
Mingjing Han, Yanbin Yin, Han Zhang, Huan Wang
2023 conf
CICAI (2)
Huike Guo, Han Zhang, Minghe Li, Xiongwen Quan
2023 J jnl
Expert Syst. Appl.
Mingjing Han, Han Zhang, Wei Li, Yanbin Yin
2023 conf
BIBM
Xiongwen Quan, Mingjing Han, Xia Guo, Zeyuan Li, Han Zhang, Yanbin Yin
2023 J jnl
Briefings Bioinform.
Wei Li, Bin Xiang, Fan Yang, Yu Rong, Yanbin Yin, Jianhua Yao, Han Zhang
2022 J jnl
IEEE Trans. Instrum. Meas.
Wanwan Huang, Han Zhang, Xiongwen Quan, Jia Wang
2022 J jnl
Comput. Methods Programs Biomed.
Xingyuan Ou, Li Gao, Xiongwen Quan, Han Zhang, Jinglong Yang, Wei Li
2022 J jnl
Neurocomputing
Jia Wang, Xiao Wang, Han Zhang
2022 J jnl
Bioinform.
Xiao Wang, Jia Wang, Han Zhang, Shenwei Huang, Yanbin Yin
2022 J jnl
Briefings Bioinform.
Chuanze Kang, Han Zhang, Zhuo Liu, Shenwei Huang, Yanbin Yin
2022 J jnl
Briefings Bioinform.
Wei Li, Han Zhang, Minghe Li, Mingjing Han, Yanbin Yin
2022 J jnl
Inf. Sci.
Mingjing Han, Han Zhang
2022 conf
BIBM
Wanwan Huang, Han Zhang, Zeyuan Li, Yanbin Yin
2021 J jnl
BMC Bioinform.
Zhuangwei Shi, Han Zhang, Chen Jin, Xiongwen Quan, Yanbin Yin
2021 J jnl
Neurocomputing
Chen Jin, Jianzhao Gao, Zhuangwei Shi, Han Zhang
2021 J jnl
Nucleic Acids Res.
Le Huang, Bowen Yang, Haidong Yi, Amina Asif, Jiawei Wang, Trevor Lithgow, Han Zhang, Fayyaz ul Amir Afsar Minhas, Yanbin Yin
2021 conf
BIBM
Wei Li, Han Zhang, Qingqing Zhao, Jian Liu, Yanbin Yin
2021 J jnl
Comput. Methods Programs Biomed.
Shuo Gao, Li Gao, Xiongwen Quan, Han Zhang, Hang Bai, Chuanze Kang
2021 conf
ICONIP (3)
Jinglong Yang, Xiongwen Quan, Han Zhang
2021 conf
BIBM
Chen Jin, Zhuangwei Shi, Han Zhang, Yanbin Yin
2020 J jnl
Nucleic Acids Res.
Haidong Yi, Le Huang, Bowen Yang, Javi Gomez, Han Zhang, Yanbin Yin
2020 conf
BIBM
Wei Li, Qingqing Zhao, Han Zhang, Xiongwen Quan, Jing Xu, Yanbin Yin
2020 J jnl
Bioinform.
Xiao Wang, Haidong Yi, Jia Wang, Zhandong Liu, Yanbin Yin, Han Zhang
2020 J jnl
Bioinform.
Jing Xu, Han Zhang, Jinfang Zheng, Philippe Dovoedo, Yanbin Yin
2019 J jnl
BMC Bioinform.
Han Zhang, Xueting Huo, Xia Guo, Xin Su, Xiongwen Quan, Chen Jin
2019 J jnl
BMC Bioinform.
Xin Su, Jing Xu, Yanbin Yin, Xiongwen Quan, Han Zhang
2019 J jnl
IEEE ACM Trans. Comput. Biol. Bioinform.
Xue Jiang, Han Zhang, Zhao Zhang, Xiongwen Quan
2018 conf
BIBM
Han Zhang, Xueting Huo, Xia Guo, Xin Su, Xiongwen Quan, Chen Jin
2018 J jnl
Bioinform.
Haidong Yi, Ayush T. Raman, Han Zhang, Genevera I. Allen, Zhandong Liu
2018 J jnl
Nucleic Acids Res.
Le Huang, Han Zhang, Peizhi Wu, Sarah Entwistle, Xueqiong Li, Tanner Yohe, Haidong Yi, Zhenglu Yang, Yanbin Yin
2018 J jnl
Nucleic Acids Res.
Han Zhang, Tanner Yohe, Le Huang, Sarah Entwistle, Peizhi Wu, Zhenglu Yang, Peter Kamp Busk, Ying Xu, Yanbin Yin
2017 J jnl
BMC Bioinform.
Xue Jiang, Han Zhang, Feng Duan, Xiongwen Quan
2017 J jnl
Bioinform.
Luyang Huo, Han Zhang, Xueting Huo, Yasong Yang, Xueqiong Li
2015 Misc conf
ICNC
Lingyue Xie, Han Zhang, Feng Duan
2014 J jnl
Wirel. Pers. Commun.
Chao Zuo, Cong Xiong, Han Zhang, Han Gao, Chang Fang
2011 J jnl
J. Syst. Sci. Complex.
Jicai Huang, Han Zhang
tests/unit/test_decompile_modules.py
← Index tests/unit/test_decompile_modules.py python
"""
Unit tests for --decompile-modules flag.

Tests that:
1. CLI argument parsing and validation works correctly
2. decompile_modules is threaded through the entire call chain
3. BinaryNinjaDecompiler.analyze_binary() gates extractions per selected modules
4. DecompileBinja.prepare_export_data() filters DB tables per selected modules
"""
import os
import pytest
from unittest.mock import Mock, patch, MagicMock

pytestmark = [pytest.mark.unit]


# ============================================================================
# CLI Argument Parsing Tests
# ============================================================================

class TestDecompileModulesCliArgument:
    """Tests for --decompile-modules CLI argument parsing in start.py."""

    def _parse_args(self, args_list):
        """Helper to parse CLI args without running main()."""
        import argparse

        parser = argparse.ArgumentParser()
        input_group = parser.add_mutually_exclusive_group(required=True)
        input_group.add_argument("--path")
        input_group.add_argument("--s3", action="store_true")
        input_group.add_argument("--s3-solo", metavar="S3_KEY")
        input_group.add_argument("--nomad-job", action="store_true")
        input_group.add_argument("--date", metavar="YYYY-MM-DD")
        input_group.add_argument("--range", nargs=2)
        input_group.add_argument("--analyzed", action="store_true")

        parser.add_argument("--repo")
        parser.add_argument("--index_prefix", default="redb")
        parser.add_argument("-d", "--decompile", action="store_true")
        parser.add_argument("-m", "--modules", default="all")
        parser.add_argument("--decompile-modules", default="all")
        parser.add_argument("--force", action="store_true")
        parser.add_argument("--dry-run", action="store_true")

        return parser.parse_args(args_list)

    def test_decompile_modules_default_all(self):
        """--decompile-modules defaults to 'all'."""
        args = self._parse_args(["--path", "/tmp/test", "--repo", "test"])
        assert args.decompile_modules == "all"

    def test_decompile_modules_single(self):
        """--decompile-modules accepts a single module."""
        args = self._parse_args([
            "--path", "/tmp/test", "--repo", "test",
            "-d", "--decompile-modules", "strings"
        ])
        assert args.decompile_modules == "strings"

    def test_decompile_modules_comma_separated(self):
        """--decompile-modules accepts comma-separated modules."""
        args = self._parse_args([
            "--path", "/tmp/test", "--repo", "test",
            "-d", "--decompile-modules", "cfg,llil,strings"
        ])
        assert args.decompile_modules == "cfg,llil,strings"

    def test_decompile_modules_with_decompile_flag(self):
        """--decompile-modules works with -d flag."""
        args = self._parse_args([
            "--path", "/tmp/test", "--repo", "test",
            "-d", "--decompile-modules", "disassembly"
        ])
        assert args.decompile is True
        assert args.decompile_modules == "disassembly"


# ============================================================================
# Validation Tests
# ============================================================================

class TestDecompileModulesValidation:
    """Tests for --decompile-modules validation logic in start.py."""

    def test_valid_modules_set_parsing(self):
        """Valid comma-separated modules are parsed into a set."""
        VALID = {"all", "decompilation", "disassembly", "cfg", "llil", "strings"}
        raw = "cfg,llil,strings"
        modules_set = {m.strip() for m in raw.split(",")}
        invalid = modules_set - VALID
        assert invalid == set()
        assert modules_set == {"cfg", "llil", "strings"}

    def test_invalid_module_detected(self):
        """Invalid module names are detected."""
        VALID = {"all", "decompilation", "disassembly", "cfg", "llil", "strings"}
        raw = "cfg,invalid_module"
        modules_set = {m.strip() for m in raw.split(",")}
        invalid = modules_set - VALID
        assert invalid == {"invalid_module"}

    def test_all_keyword_as_set(self):
        """'all' is parsed into {'all'} set."""
        raw = "all"
        if raw == "all":
            modules_set = {"all"}
        assert modules_set == {"all"}

    def test_whitespace_handling(self):
        """Whitespace around module names is stripped."""
        raw = " cfg , llil , strings "
        modules_set = {m.strip() for m in raw.split(",")}
        assert modules_set == {"cfg", "llil", "strings"}


# ============================================================================
# Ingestor Parameter Storage Tests
# ============================================================================

class TestIngestorDecompileModules:
    """Tests that Ingestor stores decompile_modules correctly."""

    @patch('builtins.open', MagicMock())
    @patch('redb.ingestor.multiprocessing')
    @patch('redb.ingestor.datetime')
    def test_ingestor_stores_decompile_modules(self, mock_datetime, mock_mp):
        """Ingestor stores the decompile_modules set."""
        mock_mp.Manager.return_value.dict = Mock(side_effect=[{}, {}])
        mock_datetime.today.return_value.strftime.return_value = "20260222"

        from redb.ingestor import Ingestor
        ingestor = Ingestor(
            path="/tmp/test", repository="test", index_prefix="redb",
            decompile_modules={"cfg", "strings"}
        )
        assert ingestor.decompile_modules == {"cfg", "strings"}

    @patch('builtins.open', MagicMock())
    @patch('redb.ingestor.multiprocessing')
    @patch('redb.ingestor.datetime')
    def test_ingestor_defaults_to_all(self, mock_datetime, mock_mp):
        """Ingestor defaults decompile_modules to {'all'} when not provided."""
        mock_mp.Manager.return_value.dict = Mock(side_effect=[{}, {}])
        mock_datetime.today.return_value.strftime.return_value = "20260222"

        from redb.ingestor import Ingestor
        ingestor = Ingestor(
            path="/tmp/test", repository="test", index_prefix="redb"
        )
        assert ingestor.decompile_modules == {"all"}

    @patch('builtins.open', MagicMock())
    @patch('redb.ingestor.multiprocessing')
    @patch('redb.ingestor.datetime')
    def test_ingestor_none_defaults_to_all(self, mock_datetime, mock_mp):
        """Ingestor converts None decompile_modules to {'all'}."""
        mock_mp.Manager.return_value.dict = Mock(side_effect=[{}, {}])
        mock_datetime.today.return_value.strftime.return_value = "20260222"

        from redb.ingestor import Ingestor
        ingestor = Ingestor(
            path="/tmp/test", repository="test", index_prefix="redb",
            decompile_modules=None
        )
        assert ingestor.decompile_modules == {"all"}


# ============================================================================
# Function Chain Threading Tests
# ============================================================================

class TestDecompileModulesThreading:
    """Tests that decompile_modules is correctly threaded through the call chain."""

    @patch('redb.workers.process_binary_file')
    @patch('redb.workers.is_binary_file', return_value=True)
    def test_process_file_internal_passes_decompile_modules(self, mock_is_binary, mock_process):
        """_process_file_internal passes decompile_modules to process_binary_file."""
        from redb.ingestor import _process_file_internal

        mock_process.return_value = (Mock(), "pebin")
        logger = Mock()
        modules = {"cfg", "strings"}

        _process_file_internal(
            "/tmp/test.bin", False, "redb", logger,
            decompile_modules=modules
        )

        mock_process.assert_called_once()
        call_kwargs = mock_process.call_args[1]
        assert call_kwargs["decompile_modules"] == modules

    @patch('redb.workers.process_binary_file')
    @patch('redb.workers.is_binary_file', return_value=True)
    def test_process_file_internal_default_decompile_modules_none(self, mock_is_binary, mock_process):
        """_process_file_internal defaults decompile_modules to None."""
        from redb.ingestor import _process_file_internal

        mock_process.return_value = (Mock(), "pebin")
        logger = Mock()

        _process_file_internal("/tmp/test.bin", False, "redb", logger)

        call_kwargs = mock_process.call_args[1]
        assert call_kwargs["decompile_modules"] is None

    @patch('redb.workers._process_file_internal')
    def test_process_file_passes_decompile_modules(self, mock_internal):
        """process_file passes decompile_modules to _process_file_internal."""
        from redb.workers import process_file

        mock_internal.return_value = (Mock(), "pebin")
        modules = {"llil", "disassembly"}

        with patch('redb.workers.setup_direct_logger', return_value=Mock()):
            process_file(
                "/tmp/test.bin", False, "redb", "/tmp/log", 1, 1,
                decompile_modules=modules
            )

        mock_internal.assert_called_once()
        call_kwargs = mock_internal.call_args[1]
        assert call_kwargs["decompile_modules"] == modules

    @patch('redb.workers._process_file_internal')
    def test_process_s3_file_passes_decompile_modules(self, mock_internal):
        """process_s3_file passes decompile_modules to _process_file_internal."""
        from redb.workers import process_s3_file

        mock_internal.return_value = (Mock(), "pebin")
        modules = {"cfg"}

        with patch('redb.workers.setup_direct_logger', return_value=Mock()), \
             patch('redb.workers.download_s3_object', return_value="/tmp/downloaded.bin"):
            process_s3_file(
                "bucket", "key", "/tmp", False, "redb", "/tmp/log", 1, 1,
                decompile_modules=modules
            )

        mock_internal.assert_called_once()
        call_kwargs = mock_internal.call_args[1]
        assert call_kwargs["decompile_modules"] == modules

    @patch('redb.workers.process_binary_file')
    def test_process_zip_passes_decompile_modules(self, mock_process):
        """process_zip_file passes decompile_modules to process_binary_file."""
        from redb.workers import process_zip_file

        mock_process.return_value = (Mock(), "pebin")
        logger = Mock()
        modules = {"strings", "decompilation"}

        import tempfile
        import zipfile

        with tempfile.NamedTemporaryFile(suffix=".zip", delete=False) as tmp:
            tmp_path = tmp.name

        try:
            with zipfile.ZipFile(tmp_path, 'w') as zf:
                zf.writestr("test.bin", b"\x00" * 100)

            process_zip_file(
                tmp_path, False, "redb", logger, "all",
                decompile_modules=modules
            )

            mock_process.assert_called_once()
            call_kwargs = mock_process.call_args[1]
            assert call_kwargs["decompile_modules"] == modules
        finally:
            os.unlink(tmp_path)

    @patch('redb.workers.process_binary_file')
    def test_process_7zip_passes_decompile_modules(self, mock_process):
        """process_7zip_file passes decompile_modules to process_binary_file."""
        from redb.workers import process_7zip_file

        mock_process.return_value = (Mock(), "pebin")
        logger = Mock()
        modules = {"cfg", "llil"}

        with patch('redb.workers.py7zr') as mock_py7zr:
            mock_zf = Mock()
            mock_py7zr.SevenZipFile.return_value.__enter__ = Mock(return_value=mock_zf)
            mock_py7zr.SevenZipFile.return_value.__exit__ = Mock(return_value=False)

            def fake_extractall(path):
                dest = os.path.join(path, "test.bin")
                with open(dest, "wb") as f:
                    f.write(b"\x00" * 100)

            mock_zf.extractall = fake_extractall

            process_7zip_file(
                "/tmp/test.7z", False, "redb", logger, "all",
                decompile_modules=modules
            )

            if mock_process.called:
                call_kwargs = mock_process.call_args[1]
                assert call_kwargs["decompile_modules"] == modules

    def test_worker_unpacks_decompile_modules(self):
        """worker() correctly unpacks decompile_modules from args tuple."""
        from redb.workers import worker

        modules = {"strings", "cfg"}

        with patch('redb.workers.process_file') as mock_pf, \
             patch('redb.workers.signal'), \
             patch('redb.workers.gc'):
            mock_pf.return_value = (Mock(), "pebin")

            args = (
                "/tmp/test.bin",  # filepath
                True,             # decompile
                "redb",           # index_prefix
                "/tmp/log",       # log_file
                1,                # file_number
                10,               # total_files
                "all",            # selected_modules
                False,            # dry_run
                False,            # yara_scan
                False,            # with_yara
                False,            # force
                modules,          # decompile_modules
            )

            worker(args)

            mock_pf.assert_called_once()
            call_kwargs = mock_pf.call_args[1]
            assert call_kwargs["decompile_modules"] == modules


# ============================================================================
# BinaryNinjaDecompiler._module_selected() Tests
# ============================================================================

class TestModuleSelected:
    """Tests for BinaryNinjaDecompiler._module_selected() helper."""

    def _make_decompiler(self, decompile_modules):
        """Create a minimal BinaryNinjaDecompiler-like object for testing _module_selected."""

        class FakeDecompiler:
            def __init__(self, modules):
                self.decompile_modules = modules

            def _module_selected(self, module_name):
                return "all" in self.decompile_modules or module_name in self.decompile_modules

        return FakeDecompiler(decompile_modules)

    def test_all_selects_everything(self):
        d = self._make_decompiler({"all"})
        assert d._module_selected("strings") is True
        assert d._module_selected("decompilation") is True
        assert d._module_selected("disassembly") is True
        assert d._module_selected("cfg") is True
        assert d._module_selected("llil") is True

    def test_specific_module_selected(self):
        d = self._make_decompiler({"cfg", "strings"})
        assert d._module_selected("cfg") is True
        assert d._module_selected("strings") is True
        assert d._module_selected("decompilation") is False
        assert d._module_selected("disassembly") is False
        assert d._module_selected("llil") is False

    def test_empty_set_selects_nothing(self):
        d = self._make_decompiler(set())
        assert d._module_selected("strings") is False
        assert d._module_selected("decompilation") is False

    def test_single_module(self):
        d = self._make_decompiler({"llil"})
        assert d._module_selected("llil") is True
        assert d._module_selected("cfg") is False
        assert d._module_selected("strings") is False


# ============================================================================
# analyze_binary() Selective Execution Tests
# ============================================================================

class TestAnalyzeBinaryGating:
    """Tests that analyze_binary() gates extraction per decompile_modules.

    Uses a FakeDecompiler to test the gating logic without importing binaryninja.
    """

    def _make_analyze_binary_runner(self, decompile_modules):
        """Create a test harness that simulates the gating logic of analyze_binary()."""
        run_all = "all" in decompile_modules
        run_strings = run_all or "strings" in decompile_modules
        run_decompilation = run_all or "decompilation" in decompile_modules
        run_disassembly = run_all or "disassembly" in decompile_modules
        run_llil = run_all or "llil" in decompile_modules
        run_cfg = run_all or "cfg" in decompile_modules
        need_per_function = run_decompilation or run_disassembly or run_llil or run_cfg

        return {
            "run_strings": run_strings,
            "run_decompilation": run_decompilation,
            "run_disassembly": run_disassembly,
            "run_llil": run_llil,
            "run_cfg": run_cfg,
            "need_per_function": need_per_function,
        }

    def test_all_runs_everything(self):
        r = self._make_analyze_binary_runner({"all"})
        assert r["run_strings"] is True
        assert r["run_decompilation"] is True
        assert r["run_disassembly"] is True
        assert r["run_llil"] is True
        assert r["run_cfg"] is True
        assert r["need_per_function"] is True

    def test_strings_only_skips_per_function_loop(self):
        """Selecting only 'strings' should skip the per-function loop entirely."""
        r = self._make_analyze_binary_runner({"strings"})
        assert r["run_strings"] is True
        assert r["run_decompilation"] is False
        assert r["run_disassembly"] is False
        assert r["run_llil"] is False
        assert r["run_cfg"] is False
        assert r["need_per_function"] is False

    def test_cfg_only_runs_cfg_and_disassembly_in_loop(self):
        """Selecting only 'cfg' should run the per-function loop but skip decompilation/llil/strings."""
        r = self._make_analyze_binary_runner({"cfg"})
        assert r["run_strings"] is False
        assert r["run_decompilation"] is False
        assert r["run_disassembly"] is False  # Not selected (but backbone runs anyway in real code)
        assert r["run_llil"] is False
        assert r["run_cfg"] is True
        assert r["need_per_function"] is True

    def test_decompilation_only(self):
        r = self._make_analyze_binary_runner({"decompilation"})
        assert r["run_decompilation"] is True
        assert r["run_strings"] is False
        assert r["run_cfg"] is False
        assert r["run_llil"] is False
        assert r["need_per_function"] is True

    def test_multiple_modules(self):
        r = self._make_analyze_binary_runner({"cfg", "llil", "strings"})
        assert r["run_strings"] is True
        assert r["run_cfg"] is True
        assert r["run_llil"] is True
        assert r["run_decompilation"] is False
        assert r["run_disassembly"] is False
        assert r["need_per_function"] is True

    def test_disassembly_only(self):
        r = self._make_analyze_binary_runner({"disassembly"})
        assert r["run_disassembly"] is True
        assert r["run_decompilation"] is False
        assert r["run_strings"] is False
        assert r["run_cfg"] is False
        assert r["run_llil"] is False
        assert r["need_per_function"] is True


# ============================================================================
# prepare_export_data() Table Filtering Tests
# ============================================================================

class TestPrepareExportDataFiltering:
    """Tests that prepare_export_data() only includes tables for selected modules.

    Simulates the filtering logic from DecompileBinja.prepare_export_data()
    without importing binaryninja.
    """

    def _get_export_tables(self, decompile_modules):
        """Simulate the table selection logic from prepare_export_data()."""
        run_all = "all" in decompile_modules
        run_decompilation = run_all or "decompilation" in decompile_modules
        run_disassembly = run_all or "disassembly" in decompile_modules
        run_llil = run_all or "llil" in decompile_modules
        run_cfg = run_all or "cfg" in decompile_modules
        run_strings = run_all or "strings" in decompile_modules

        tables = set()
        if run_decompilation:
            tables.update(["decompiled_content", "decompiled_refs"])
        if run_disassembly:
            tables.update(["disassembled_content", "disassembled_refs", "function_similarity_metrics"])
        if run_llil:
            tables.update(["llil_content", "llil_refs"])
        if run_cfg:
            tables.update(["cfg_functions"])
        if run_strings:
            tables.update(["strings_raw"])
        # Errors always included if per-function loop ran
        if run_decompilation or run_disassembly or run_llil or run_cfg:
            tables.add("function_analysis_errors")

        return tables

    def test_all_includes_all_tables(self):
        tables = self._get_export_tables({"all"})
        assert "decompiled_content" in tables
        assert "decompiled_refs" in tables
        assert "disassembled_content" in tables
        assert "disassembled_refs" in tables
        assert "function_similarity_metrics" in tables
        assert "llil_content" in tables
        assert "llil_refs" in tables
        assert "cfg_functions" in tables
        assert "strings_raw" in tables
        assert "function_analysis_errors" in tables

    def test_strings_only_includes_only_strings(self):
        tables = self._get_export_tables({"strings"})
        assert tables == {"strings_raw"}

    def test_cfg_only_includes_cfg_and_errors(self):
        tables = self._get_export_tables({"cfg"})
        assert tables == {"cfg_functions", "function_analysis_errors"}

    def test_decompilation_only_tables(self):
        tables = self._get_export_tables({"decompilation"})
        assert tables == {"decompiled_content", "decompiled_refs", "function_analysis_errors"}

    def test_disassembly_only_tables(self):
        tables = self._get_export_tables({"disassembly"})
        assert tables == {
            "disassembled_content", "disassembled_refs",
            "function_similarity_metrics", "function_analysis_errors"
        }

    def test_llil_only_tables(self):
        tables = self._get_export_tables({"llil"})
        assert tables == {"llil_content", "llil_refs", "function_analysis_errors"}

    def test_combined_cfg_strings_tables(self):
        tables = self._get_export_tables({"cfg", "strings"})
        assert tables == {"cfg_functions", "strings_raw", "function_analysis_errors"}

    def test_no_errors_table_for_strings_only(self):
        """Error table should NOT be included when only strings is selected (no per-function loop)."""
        tables = self._get_export_tables({"strings"})
        assert "function_analysis_errors" not in tables


# ============================================================================
# DecompileBinja Parameter Acceptance Tests
# ============================================================================

class TestDecompileBinjaDecompileModules:
    """Tests that DecompileBinja accepts and stores decompile_modules.

    Since DecompileBinja imports binaryninja (which requires blake3 etc),
    we test the default/init logic in isolation.
    """

    def test_default_decompile_modules(self):
        """decompile_modules defaults to {'all'} when None."""
        modules = None
        result = modules or {"all"}
        assert result == {"all"}

    def test_explicit_decompile_modules(self):
        """Explicit decompile_modules is preserved."""
        modules = {"cfg", "llil"}
        result = modules or {"all"}
        assert result == {"cfg", "llil"}

    def test_empty_set_becomes_all(self):
        """Empty set is falsy and defaults to {'all'}."""
        modules = set()
        result = modules or {"all"}
        assert result == {"all"}


# ============================================================================
# Integration-Style: analyze_binary() Per-Function Gating (Logic Tests)
# ============================================================================

class TestAnalyzeBinaryPerFunctionGating:
    """Test that the per-function extraction gating produces correct results structures.

    These test the logic patterns from analyze_binary() using mock data,
    verifying that:
    - Unselected modules produce empty result lists
    - Selected modules produce populated result lists
    - Disassembly always runs when any per-function module is selected
    - Cross-linkage None handling works when counterparts are skipped
    """

    def _simulate_per_function_results(self, decompile_modules, num_functions=3):
        """Simulate the per-function extraction loop from analyze_binary().

        Returns results dict with the same structure as analyze_binary().
        """
        run_all = "all" in decompile_modules
        run_strings = run_all or "strings" in decompile_modules
        run_decompilation = run_all or "decompilation" in decompile_modules
        run_disassembly = run_all or "disassembly" in decompile_modules
        run_llil = run_all or "llil" in decompile_modules
        run_cfg = run_all or "cfg" in decompile_modules
        need_per_function = run_decompilation or run_disassembly or run_llil or run_cfg

        results = {
            "decompiled": [],
            "disassembled": [],
            "cfg": [],
            "llil": [],
            "errors": [],
            "strings": [],
        }

        if run_strings:
            results["strings"] = [{"string": f"str_{i}"} for i in range(5)]

        if not need_per_function:
            return results

        for i in range(num_functions):
            hlil_json = {"decompiled_function_hash": f"hlil_{i}"} if run_decompilation else None
            disass_json = {"disassembled_function_hash": f"disass_{i}", "disassembled_function_name": f"func_{i}", "disassembled_function_address": i * 100}  # always
            cfg_json = {"function_address": i * 100, "cyclomatic_complexity": 5} if run_cfg else None
            lowlevel_json = {"sha256_llil": f"llil_{i}", "tlsh_llil": "def", "minhash": [1, 2]} if run_llil else None

            # Simulate cross-linkage (same pattern as real code)
            if hlil_json and disass_json:
                hlil_json["disassembled_function_hash"] = disass_json["disassembled_function_hash"]
                disass_json["decompiled_function_hash"] = hlil_json["decompiled_function_hash"]
                results["decompiled"].append(hlil_json)
                if run_disassembly:
                    results["disassembled"].append(disass_json)
            elif hlil_json:
                hlil_json["disassembled_function_hash"] = None
                results["decompiled"].append(hlil_json)
            elif disass_json:
                disass_json["decompiled_function_hash"] = None
                if run_disassembly:
                    results["disassembled"].append(disass_json)

            if lowlevel_json and disass_json:
                lowlevel_json["disassembled_function_hash"] = disass_json["disassembled_function_hash"]
                disass_json["tlsh_llil"] = lowlevel_json.get("tlsh_llil")
                disass_json["minhash"] = lowlevel_json.get("minhash")
            elif lowlevel_json:
                lowlevel_json["disassembled_function_hash"] = None
            elif disass_json:
                disass_json["tlsh_llil"] = None
                disass_json["minhash"] = None

            if lowlevel_json:
                results["llil"].append(lowlevel_json)

            if cfg_json and disass_json:
                cfg_json["disassembled_function_hash"] = disass_json["disassembled_function_hash"]
                disass_json["cyclomatic_complexity"] = cfg_json.get("cyclomatic_complexity")
                results["cfg"].append(cfg_json)
            elif cfg_json:
                cfg_json["disassembled_function_hash"] = None
                results["cfg"].append(cfg_json)

            if disass_json and "cyclomatic_complexity" not in disass_json:
                disass_json["cyclomatic_complexity"] = None

        return results

    def test_all_populates_everything(self):
        r = self._simulate_per_function_results({"all"}, 3)
        assert len(r["decompiled"]) == 3
        assert len(r["disassembled"]) == 3
        assert len(r["cfg"]) == 3
        assert len(r["llil"]) == 3
        assert len(r["strings"]) == 5

    def test_strings_only_populates_strings(self):
        r = self._simulate_per_function_results({"strings"}, 3)
        assert len(r["strings"]) == 5
        assert len(r["decompiled"]) == 0
        assert len(r["disassembled"]) == 0
        assert len(r["cfg"]) == 0
        assert len(r["llil"]) == 0

    def test_cfg_only_populates_cfg_no_disassembly_export(self):
        """With only 'cfg' selected, cfg list is populated but disassembled is empty
        (disassembly runs internally but not exported)."""
        r = self._simulate_per_function_results({"cfg"}, 3)
        assert len(r["cfg"]) == 3
        assert len(r["disassembled"]) == 0  # Not selected for export
        assert len(r["decompiled"]) == 0
        assert len(r["llil"]) == 0
        assert len(r["strings"]) == 0

    def test_cfg_has_disassembled_function_hash_linkage(self):
        """CFG entries get disassembled_function_hash from backbone disassembly."""
        r = self._simulate_per_function_results({"cfg"}, 2)
        for cfg in r["cfg"]:
            assert cfg["disassembled_function_hash"] is not None
            assert cfg["disassembled_function_hash"].startswith("disass_")

    def test_decompilation_only_has_none_disassembly_linkage_when_no_disasm(self):
        """When only decompilation selected, disassembled still runs (backbone)
        so linkage is still available."""
        r = self._simulate_per_function_results({"decompilation"}, 2)
        assert len(r["decompiled"]) == 2
        # Disassembly runs as backbone, so linkage hash is present
        for d in r["decompiled"]:
            assert d["disassembled_function_hash"] is not None

    def test_disassembly_without_llil_has_none_fuzzy_hashes(self):
        """When LLIL is not selected, disassembly records have None fuzzy hashes."""
        r = self._simulate_per_function_results({"disassembly"}, 2)
        for d in r["disassembled"]:
            assert d["tlsh_llil"] is None
            assert d["minhash"] is None

    def test_disassembly_without_decompilation_has_none_decompiled_hash(self):
        """When decompilation is not selected, disassembly has None decompiled_function_hash."""
        r = self._simulate_per_function_results({"disassembly"}, 2)
        for d in r["disassembled"]:
            assert d["decompiled_function_hash"] is None

    def test_disassembly_without_cfg_has_none_cyclomatic(self):
        """When CFG is not selected, disassembly has None cyclomatic_complexity."""
        r = self._simulate_per_function_results({"disassembly"}, 2)
        for d in r["disassembled"]:
            assert d["cyclomatic_complexity"] is None

    def test_all_linkage_populated(self):
        """When all modules run, all cross-linkage fields are populated."""
        r = self._simulate_per_function_results({"all"}, 2)
        for d in r["disassembled"]:
            assert d["decompiled_function_hash"] is not None
            assert d["tlsh_llil"] is not None
            assert d["cyclomatic_complexity"] is not None
        for h in r["decompiled"]:
            assert h["disassembled_function_hash"] is not None
        for c in r["cfg"]:
            assert c["disassembled_function_hash"] is not None
        for ll in r["llil"]:
            assert ll["disassembled_function_hash"] is not None


# ============================================================================
# IOC Extraction Gating by decompile_modules
# ============================================================================

class TestIOCExtractionGating:
    """Tests that IOC extraction only runs when its data sources are present.

    IOCExtractorFromResults consumes in-memory analysis_results['strings']
    and analysis_results['decompiled']. It runs automatically (implicit
    dependency) when 'decompilation' or 'strings' modules produce data.
    It is NOT a standalone selectable module.
    """

    @staticmethod
    def _is_ioc_relevant(decompile_modules):
        """Replicate the gating logic from workers.py."""
        return (
            not decompile_modules
            or "all" in decompile_modules
            or "decompilation" in decompile_modules
            or "strings" in decompile_modules
        )

    def test_all_triggers_ioc(self):
        assert self._is_ioc_relevant({"all"}) is True

    def test_decompilation_triggers_ioc(self):
        assert self._is_ioc_relevant({"decompilation"}) is True

    def test_strings_triggers_ioc(self):
        assert self._is_ioc_relevant({"strings"}) is True

    def test_decompilation_and_strings_triggers_ioc(self):
        assert self._is_ioc_relevant({"decompilation", "strings"}) is True

    def test_cfg_only_skips_ioc(self):
        assert self._is_ioc_relevant({"cfg"}) is False

    def test_disassembly_only_skips_ioc(self):
        assert self._is_ioc_relevant({"disassembly"}) is False

    def test_llil_only_skips_ioc(self):
        assert self._is_ioc_relevant({"llil"}) is False

    def test_cfg_and_disassembly_skips_ioc(self):
        assert self._is_ioc_relevant({"cfg", "disassembly"}) is False

    def test_cfg_and_llil_skips_ioc(self):
        assert self._is_ioc_relevant({"cfg", "llil"}) is False

    def test_cfg_and_decompilation_triggers_ioc(self):
        """If decompilation is included alongside cfg, IOC should run."""
        assert self._is_ioc_relevant({"cfg", "decompilation"}) is True

    def test_disassembly_and_strings_triggers_ioc(self):
        """If strings is included alongside disassembly, IOC should run."""
        assert self._is_ioc_relevant({"disassembly", "strings"}) is True

    def test_none_modules_triggers_ioc(self):
        """When decompile_modules is None (default), IOC should run."""
        assert self._is_ioc_relevant(None) is True

    def test_empty_set_triggers_ioc(self):
        """When decompile_modules is empty set, IOC should run (falsy)."""
        assert self._is_ioc_relevant(set()) is True