Hamid Mohamadi

18 papers B 1C 1Journal 12Unranked 4
YearRankTypeTitle / Venue / Authors
2022 J jnl
ntHash2: recursive spaced seed hashing for nucleotide sequences.
Bioinform.
Parham Kazemi, Johnathan Wong, Vladimir Nikolic, Hamid Mohamadi, René L. Warren, Inanç Birol
2020 J jnl
Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters.
Proc. Natl. Acad. Sci. USA
Justin Chu, Hamid Mohamadi, Emre Erhan, Jeffery Tse, Readman Chiu, Sarah Yeo, Inanç Birol
2019 J jnl
ntEdit: scalable genome sequence polishing.
Bioinform.
René L. Warren, Lauren Coombe, Hamid Mohamadi, Jessica Zhang, Barry Jaquish, Nathalie Isabel, Steven J. M. Jones, Jean Bousquet, Jörg Bohlmann, Inanç Birol
2018 J jnl
ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.
Bioinform.
Hamza Khan, Hamid Mohamadi, Benjamin P. Vandervalk, René L. Warren, Justin Chu, Inanç Birol
2018 J jnl
Tigmint: correcting assembly errors using linked reads from large molecules.
BMC Bioinform.
Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol
2018 C conf
ntPack: A Software Package for Big Data in Genomics.
BDCAT
Inanç Birol, Hamid Mohamadi, Justin Chu
2017 J jnl
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art.
Bioinform.
Justin Chu, Hamid Mohamadi, René L. Warren, Chen Yang, Inanç Birol
2017 J jnl
ntCard: a streaming algorithm for cardinality estimation in genomics data.
Bioinform.
Hamid Mohamadi, Hamza Khan, Inanç Birol
2016 J jnl
ntHash: recursive nucleotide hashing.
Bioinform.
Hamid Mohamadi, Justin Chu, Benjamin P. Vandervalk, Inanç Birol
2014 J jnl
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.
Bioinform.
Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S. N. Butterfield, A. Gordon Robertson, Inanç Birol
2014 — conf
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph.
BIBM
Benjamin P. Vandervalk, Shaun D. Jackman, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali, Justin Chu, René L. Warren, Inanç Birol
2014 — conf
Spaced seed data structures.
BIBM
Inanç Birol, Hamid Mohamadi, Anthony Raymond, Karthika Raghavan, Justin Chu, Benjamin P. Vandervalk, Shaun D. Jackman, René L. Warren
2013 J jnl
BOND: Basic OligoNucleotide Design.
BMC Bioinform.
Lucian Ilie, Hamid Mohamadi, Geoffrey Brian Golding, William F. Smyth
2011 J jnl
Design and analysis of genetic fuzzy systems for intrusion detection in computer networks.
Expert Syst. Appl.
Mohammad Saniee Abadeh, Hamid Mohamadi, Jafar Habibi
2009 — conf
A Novel Fuzzy Genetic Annealing Classification Approach.
EMS
Maziyar Baran Pouyan, Hamid Mohamadi, Mohammad Saniee Abadeh, Ali Foroughifar
2009 B conf
Knowledge Discovery Using a New Interpretable Simulated Annealing Based Fuzzy Classification System.
ACIIDS
Hamid Mohamadi, Jafar Habibi, Shahrouz Moaven
2008 J jnl
Data mining with a simulated annealing based fuzzy classification system.
Pattern Recognit.
Hamid Mohamadi, Jafar Habibi, Mohammad Saniee Abadeh, Hamid Saadi
2008 — conf
Misuse Intrusion Detection Using a Fuzzy-Metaheuristic Approach.
Asia International Conference on Modelling and Simulation
Hamid Mohamadi, Jafar Habibi, Mohammad Saniee Abadeh