Hamdi A. Tchelepi

65 papers A 1Journal 64
YearRankTypeTitle / Venue / Authors
2025 J jnl
CoRR
Matteo Frigo, Nicola Castelletto, Matteo Cusini, Randolph R. Settgast, Hamdi A. Tchelepi
2025 J jnl
J. Comput. Phys.
Ricardo H. Deucher, Jacques Franc, Olav Møyner, Hamdi A. Tchelepi
2024 J jnl
J. Open Source Softw.
Randolph R. Settgast, Ryan M. Aronson, Julien R. Besset, Andrea Borio, Quan M. Bui, Thomas J. Byer, Nicola Castelletto, Aurélien Citrain, Benjamin C. Corbett, James Corbett, Philippe Cordier, Matthias A. Cremon, Cameron M. Crook, Matteo Cusini, Fan Fei, Stefano Frambati, Jacques Franc, Andrea Franceschini, Matteo Frigo, Pengcheng Fu, Thomas Gazzola, Herve Gross, François P. Hamon, Brian M. Han, Yue Hao, Rasim Hasanzade, Michael Homel, Jian Huang, Tao Jin, Isaac Ju, Dickson Kachuma, Mohammad Karimi-Fard, Taeho Kim, Sergey Klevtsov, Alexandre Lapene, Victor Antonio Paludetto Magri, Antoine Mazuyer, Mamadou N'diaye, Daniel Osei-Kuffuor, Stefan Povolny, Guotong Ren, Shabnam J. Semnani, Christopher S. Sherman, Melvin Rey, Hamdi A. Tchelepi, William R. Tobin, Pavel Tomin, Lionel Untereiner, Arturo Vargas, Sohail Waziri, XianHuan Wen, Joshua A. White, Hui Wu
2024 J jnl
Comput. Geosci.
Xin Ju, François P. Hamon, Gege Wen, Rayan Kanfar, Mauricio Araya-Polo, Hamdi A. Tchelepi
2024 J jnl
CoRR
Ryan M. Aronson, Pavel Tomin, Nicola Castelletto, François P. Hamon, Joshua A. White, Hamdi A. Tchelepi
2024 J jnl
CoRR
Ryan M. Aronson, Nicola Castelletto, François P. Hamon, Joshua A. White, Hamdi A. Tchelepi
2023 J jnl
J. Comput. Phys.
Jiamin Jiang, Pavel Tomin, Hamdi A. Tchelepi
2023 J jnl
J. Comput. Phys.
Jacques Franc, Olav Møyner, Hamdi A. Tchelepi
2023 J jnl
CoRR
Xin Ju, François P. Hamon, Gege Wen, Rayan Kanfar, Mauricio Araya-Polo, Hamdi A. Tchelepi
2023 J jnl
Eng. Appl. Artif. Intell.
Ruixiao Sun, Huanquan Pan, Hongyu Xiong, Hamdi A. Tchelepi
2023 J jnl
CoRR
Bernd Flemisch, Jan M. Nordbotten, Martin A. Fernø, Ruben Juanes, Holger Class, Mojdeh Delshad, Florian Doster, Jonathan Ennis-King, Jacques Franc, Sebastian Geiger, Dennis Gläser, Christopher Green, James Gunning, Hadi Hajibeygi, Samuel J. Jackson, Mohamad Jammoul, Satish Karra, Jiawei Li, Stephan K. Matthäi, Terry Miller, Qi Shao, Catherine Spurin, Philip Stauffer, Hamdi A. Tchelepi, Xiaoming Tian, Hari S. Viswanathan, Denis V. Voskov, Yuhang Wang, Michiel Wapperom, Mary F. Wheeler, Andrew Wilkins, AbdAllah A. Youssef, Ziliang Zhang
2023 J jnl
J. Comput. Phys.
Patrick Jenny, Rasim Hasanzade, Hamdi A. Tchelepi
2022 J jnl
CoRR
Mamadou N'diaye, François P. Hamon, Hamdi A. Tchelepi
2022 J jnl
J. Comput. Phys.
Ricardo H. Deucher, Hamdi A. Tchelepi
2022 J jnl
CoRR
Marta D'Elia, Hang Deng, Cedric G. Fraces, Krishna C. Garikipati, Lori Graham-Brady, Amanda A. Howard, George Em Karniadakis, Vahid Keshavarzzadeh, Robert M. Kirby, J. Nathan Kutz, Chunhui Li, Xing Liu, Hannah Lu, Pania Newell, Daniel O'Malley, Masa Prodanovic, Gowri Srinivasan, Alexandre M. Tartakovsky, Daniel M. Tartakovsky, Hamdi A. Tchelepi, Bozo Vazic, Hari S. Viswanathan, Hongkyu Yoon, Piotr Zarzycki
2022 J jnl
J. Comput. Phys.
Andrea Franceschini, Nicola Castelletto, Joshua A. White, Hamdi A. Tchelepi
2022 J jnl
CoRR
Cedric Fraces Gasmi, Hamdi A. Tchelepi
2021 J jnl
J. Comput. Phys.
Yashar Mehmani, Nicola Castelletto, Hamdi A. Tchelepi
2021 J jnl
CoRR
Farzaneh Rajabi, Hamdi A. Tchelepi
2021 J jnl
SoftwareX
Arnout M. P. Boelens, Hamdi A. Tchelepi
2021 J jnl
J. Comput. Phys.
Jiawei Li, Pavel Tomin, Hamdi A. Tchelepi
2021 J jnl
CoRR
Sebastian B. M. Bosma, François P. Hamon, Bradley T. Mallison, Hamdi A. Tchelepi
2020 J jnl
CoRR
Andrea Franceschini, Nicola Castelletto, Joshua A. White, Hamdi A. Tchelepi
2020 J jnl
J. Comput. Appl. Math.
Kirill M. Terekhov, Hamdi A. Tchelepi
2020 J jnl
CoRR
I. Shovkun, T. Garipov, Hamdi A. Tchelepi
2020 J jnl
CoRR
Chiyu Max Jiang, Soheil Esmaeilzadeh, Kamyar Azizzadenesheli, Karthik Kashinath, Mustafa Mustafa, Hamdi A. Tchelepi, Philip Marcus, Prabhat, Anima Anandkumar
2020 A conf
SC
Chiyu Max Jiang, Soheil Esmaeilzadeh, Kamyar Azizzadenesheli, Karthik Kashinath, Mustafa Mustafa, Hamdi A. Tchelepi, Philip Marcus, Prabhat, Anima Anandkumar
2020 J jnl
CoRR
Cedric G. Fraces, Adrien Papaioannou, Hamdi A. Tchelepi
2020 J jnl
CoRR
Bazyli Klockiewicz, Léopold Cambier, Ryan Humble, Hamdi A. Tchelepi, Eric Darve
2020 J jnl
J. Comput. Phys.
Zhipeng Qin, Soheil Esmaeilzadeh, Amir Riaz, Hamdi A. Tchelepi
2019 J jnl
J. Comput. Phys.
Massimiliano Ferronato, Andrea Franceschini, Carlo Janna, Nicola Castelletto, Hamdi A. Tchelepi
2019 J jnl
CoRR
Ammar Alali, François P. Hamon, Bradley T. Mallison, Hamdi A. Tchelepi
2019 J jnl
J. Comput. Phys.
Bo Guo, Yashar Mehmani, Hamdi A. Tchelepi
2019 J jnl
J. Comput. Phys.
Yashar Mehmani, Hamdi A. Tchelepi
2019 J jnl
J. Comput. Phys.
Zhi Yang Wong, Felix Kwok, Roland N. Horne, Hamdi A. Tchelepi
2019 J jnl
J. Comput. Phys. X
Amir H. Delgoshaie, Peter W. Glynn, Patrick Jenny, Hamdi A. Tchelepi
2018 J jnl
J. Comput. Phys.
Moataz O. Abu-Al-Saud, Stéphane Popinet, Hamdi A. Tchelepi
2018 J jnl
J. Comput. Phys.
Jiamin Jiang, Hamdi A. Tchelepi
2018 J jnl
J. Comput. Phys.
Yashar Mehmani, Hamdi A. Tchelepi
2018 J jnl
J. Comput. Phys.
Arthur Moncorgé, Hamdi A. Tchelepi, Patrick Jenny
2018 J jnl
J. Comput. Phys.
Zhi Yang Wong, Roland N. Horne, Hamdi A. Tchelepi
2017 J jnl
J. Comput. Phys.
Qinzhuo Liao, Dongxiao Zhang, Hamdi A. Tchelepi
2017 J jnl
J. Comput. Phys.
Kirill M. Terekhov, Bradley T. Mallison, Hamdi A. Tchelepi
2017 J jnl
J. Comput. Phys.
Ahmad S. Abushaikha, Denis V. Voskov, Hamdi A. Tchelepi
2017 J jnl
J. Comput. Phys.
Arthur Moncorgé, Hamdi A. Tchelepi, Patrick Jenny
2017 J jnl
SIAM/ASA J. Uncertain. Quantification
Fayadhoi Ibrahima, Hamdi A. Tchelepi
2017 J jnl
J. Comput. Phys.
Sebastian B. M. Bosma, Hadi Hajibeygi, Matei Tene, Hamdi A. Tchelepi
2017 J jnl
J. Comput. Phys.
Nicola Castelletto, Hadi Hajibeygi, Hamdi A. Tchelepi
2017 J jnl
J. Comput. Phys.
Moataz O. Abu-Al-Saud, Amir Riaz, Hamdi A. Tchelepi
2017 J jnl
CoRR
Amir H. Delgoshaie, Patrick Jenny, Hamdi A. Tchelepi
2016 J jnl
SIAM J. Numer. Anal.
François P. Hamon, Hamdi A. Tchelepi
2015 J jnl
J. Comput. Phys.
Boxiao Li, Hamdi A. Tchelepi
2014 J jnl
J. Comput. Phys.
Yixuan Wang, Hadi Hajibeygi, Hamdi A. Tchelepi
2013 J jnl
J. Comput. Phys.
Xiaochen Wang, Hamdi A. Tchelepi
2009 J jnl
J. Comput. Phys.
Seong H. Lee, H. Zhou, Hamdi A. Tchelepi
2009 J jnl
SIAM J. Sci. Comput.
Romain de Loubens, Amir Riaz, Hamdi A. Tchelepi
2009 J jnl
J. Comput. Phys.
Patrick Jenny, Hamdi A. Tchelepi, Seong H. Lee
2008 J jnl
J. Comput. Phys.
Manav Tyagi, Patrick Jenny, Ivan Lunati, Hamdi A. Tchelepi
2008 J jnl
Multiscale Model. Simul.
Marc Andre Hesse, Bradley T. Mallison, Hamdi A. Tchelepi
2008 J jnl
SIAM J. Numer. Anal.
Felix Kwok, Hamdi A. Tchelepi
2007 J jnl
J. Comput. Phys.
Felix Kwok, Hamdi A. Tchelepi
2006 J jnl
J. Comput. Phys.
Patrick Jenny, Seong H. Lee, Hamdi A. Tchelepi
2006 J jnl
J. Comput. Phys.
Sébastien F. Matringe, Ruben Juanes, Hamdi A. Tchelepi
2006 J jnl
Multiscale Model. Simul.
Christian Wolfsteiner, Seong H. Lee, Hamdi A. Tchelepi
2005 J jnl
Multiscale Model. Simul.
Patrick Jenny, Seong H. Lee, Hamdi A. Tchelepi
redb/extractors/elf_extractors/elf_sections.py
← Index redb/extractors/elf_extractors/elf_sections.py python
import inspect
import hashlib
import math
from collections import Counter
from datetime import datetime, timezone
from typing import Any, List, Dict

from elftools.elf.elffile import ELFFile
from elftools.common.exceptions import ELFError

from redb.extractors.enum import Tag
from redb.extractors.elf_extractor import ELFExtractor
from redb.models.dataclasses import ELFSection


class ELFSectionExtractor(ELFExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        elf=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            elf,
        )
        self.elf_sections = []
        self.elastic_index = self.index_prefix + "-elf_sections"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def _is_empty_result(self, extracted_data) -> bool:
        """
        Override: Empty sections is an ERROR, not a valid empty case.
        A valid ELF file must have sections (at minimum a null section).
        """
        # Always return False - empty sections should be treated as an error
        return False

    def _calculate_entropy(self, data: bytes) -> float:
        """Calculate Shannon entropy of data."""
        if not data:
            return 0.0

        try:
            # Count frequency of each byte
            byte_counts = Counter(data)
            data_len = len(data)

            # Calculate entropy
            entropy = 0.0
            for count in byte_counts.values():
                if count > 0:
                    frequency = count / data_len
                    entropy -= frequency * math.log2(frequency)

            return entropy
        except Exception as e:
            self.log.error(f"Error calculating entropy: {e}")
            return 0.0

    def _map_section_type(self, sh_type_str: str) -> int:
        """Map section type string to enum value."""
        type_map = {
            'SHT_NULL': 0,
            'SHT_PROGBITS': 1,
            'SHT_SYMTAB': 2,
            'SHT_STRTAB': 3,
            'SHT_RELA': 4,
            'SHT_HASH': 5,
            'SHT_DYNAMIC': 6,
            'SHT_NOTE': 7,
            'SHT_NOBITS': 8,
            'SHT_REL': 9,
            'SHT_DYNSYM': 11
        }
        return type_map.get(sh_type_str, 0)

    def _decode_section_flags(self, flags: int) -> List[str]:
        """Decode section flags to human-readable strings."""
        flag_strings = []

        # Common ELF section flags
        if flags & 0x1:  # SHF_WRITE
            flag_strings.append('WRITE')
        if flags & 0x2:  # SHF_ALLOC
            flag_strings.append('ALLOC')
        if flags & 0x4:  # SHF_EXECINSTR
            flag_strings.append('EXECINSTR')
        if flags & 0x10:  # SHF_MERGE
            flag_strings.append('MERGE')
        if flags & 0x20:  # SHF_STRINGS
            flag_strings.append('STRINGS')
        if flags & 0x40:  # SHF_INFO_LINK
            flag_strings.append('INFO_LINK')
        if flags & 0x80:  # SHF_LINK_ORDER
            flag_strings.append('LINK_ORDER')
        if flags & 0x100:  # SHF_OS_NONCONFORMING
            flag_strings.append('OS_NONCONFORMING')
        if flags & 0x200:  # SHF_GROUP
            flag_strings.append('GROUP')
        if flags & 0x400:  # SHF_TLS
            flag_strings.append('TLS')

        return flag_strings if flag_strings else ['NONE']

    def _extract_section_data(self, section) -> Dict:
        """Extract data from a single section."""
        try:
            header = section.header

            # Get section name (handle empty names)
            section_name = section.name if section.name else f"<unnamed_{section.header.get('sh_name', 0)}>"

            # Get section type and map to enum
            sh_type_str = header.get('sh_type', 'SHT_NULL')
            section_type_enum = self._map_section_type(sh_type_str)
            section_type_str = sh_type_str.replace('SHT_', '') if sh_type_str.startswith('SHT_') else sh_type_str

            # Get section properties
            section_flags = header.get('sh_flags', 0)
            section_flags_str = self._decode_section_flags(section_flags)
            section_addr = header.get('sh_addr', 0)
            section_offset = header.get('sh_offset', 0)
            section_size = header.get('sh_size', 0)
            section_link = header.get('sh_link', 0)
            section_info = header.get('sh_info', 0)
            section_addralign = header.get('sh_addralign', 0)
            section_entsize = header.get('sh_entsize', 0)

            # Calculate entropy and hashes for section data
            section_entropy = 0.0
            section_sha256 = ""
            section_md5 = ""

            try:
                if section_size > 0 and section_type_str != 'NOBITS':
                    section_data = section.data()
                    if section_data:
                        # Calculate entropy
                        section_entropy = self._calculate_entropy(section_data)

                        # Calculate hashes
                        section_sha256 = hashlib.sha256(section_data).hexdigest()
                        section_md5 = hashlib.md5(section_data).hexdigest()
            except Exception as e:
                self.log.warning(f"Could not read section '{section_name}' data: {e}")
                section_entropy = 0.0
                section_sha256 = ""
                section_md5 = ""

            return ELFSection(
                section_name=section_name,
                section_type=section_type_enum,
                section_type_str=section_type_str,
                section_flags=section_flags,
                section_flags_str=section_flags_str,
                section_addr=section_addr,
                section_offset=section_offset,
                section_size=section_size,
                section_link=section_link,
                section_info=section_info,
                section_addralign=section_addralign,
                section_entsize=section_entsize,
                section_entropy=section_entropy,
                section_sha256=section_sha256,
                section_md5=section_md5
            )

        except Exception as e:
            self.log.error(f"Error extracting section data: {e}")
            return None

    def tag(self):
        return Tag.ELF_SECTIONS.value if hasattr(Tag, 'ELF_SECTIONS') else "elf_sections"

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)

            def extract_data(elf):
                sections_data = []

                # Iterate through all sections with per-section error handling
                for section_index, section in enumerate(elf.iter_sections()):
                    try:
                        section_data = self._extract_section_data(section)
                        if section_data:
                            sections_data.append(section_data)
                        else:
                            self.log.warning(f"Failed to extract data for section {section_index}")
                    except Exception as e:
                        self.log.warning(f"Error processing section {section_index}: {e}")
                        # Continue processing other sections

                return sections_data

            if not self._is_elf_file():
                return None

            result = self._with_elf_file(extract_data)
            if result is None:
                return None

            self.elf_sections = result
            return self.elf_sections

        except Exception as e:
            self.log.error(f"Error extracting ELF sections {self.hash.sha256}: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        self.log.debug(inspect.currentframe().f_code.co_name)

        if exporter_type == "ElasticsearchExporter":
            return self.elf_sections
        elif exporter_type == "ClickHouseExporter":
            try:
                if not self.elf_sections:
                    return None

                # Prepare data arrays for all sections
                data = []
                current_time = datetime.now(timezone.utc)
                for section in self.elf_sections:
                    row = [
                        self.sha256,
                        self.md5,
                        self.sha1,
                        section.section_name,
                        section.section_type,
                        section.section_type_str,
                        section.section_flags,
                        section.section_flags_str,
                        section.section_addr,
                        section.section_offset,
                        section.section_size,
                        section.section_link,
                        section.section_info,
                        section.section_addralign,
                        section.section_entsize,
                        section.section_entropy,
                        section.section_sha256,
                        section.section_md5,
                        current_time
                    ]
                    data.append(row)

                column_names = [
                    'sha256', 'md5', 'sha1',
                    'section_name', 'section_type', 'section_type_str',
                    'section_flags', 'section_flags_str',
                    'section_addr', 'section_offset', 'section_size',
                    'section_link', 'section_info', 'section_addralign', 'section_entsize',
                    'section_entropy', 'section_sha256', 'section_md5',
                    'analysis_date'
                ]

                column_type_names = [
                    'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                    'LowCardinality(String)',
                    "Enum8('NULL'=0, 'PROGBITS'=1, 'SYMTAB'=2, 'STRTAB'=3, 'RELA'=4, 'HASH'=5, 'DYNAMIC'=6, 'NOTE'=7, 'NOBITS'=8, 'REL'=9, 'DYNSYM'=11)",
                    'LowCardinality(String)',
                    'UInt64',
                    'Array(LowCardinality(String))',
                    'UInt64', 'UInt64', 'UInt64',
                    'UInt32', 'UInt32', 'UInt64', 'UInt64',
                    'Float64',
                    'FixedString(64)', 'FixedString(32)',
                    'DateTime64(3, \'UTC\')'
                ]

                if not data:
                    return None

                return (data, column_names, column_type_names)

            except Exception as e:
                self.log.error(f"Error preparing export data: {e}")
                raise

    def get_clickhouse_table(self) -> str:
        return "redb_elf_sections"