Hakim Tafer

15 papers Journal 11Unranked 4
YearRankTypeTitle / Venue / Authors
2014 J jnl
Nat.
Juliane C. Dohm, André E. Minoche, Daniela Holtgräwe, Salvador Capella-Gutiérrez, Falk Zakrzewski, Hakim Tafer, Oliver Rupp, Thomas Rosleff Sörensen, Ralf Stracke, Richard Reinhardt, Alexander Goesmann, Thomas Kraft, Britta Schulz, Peter F. Stadler, Thomas Schmidt, Toni Gabaldón, Hans Lehrach, Bernd Weisshaar, Heinz Himmelbauer
2014 J jnl
Bioinform.
Sebastian Bartschat, Stephanie Kehr, Hakim Tafer, Peter F. Stadler, Jana Hertel
2013 J jnl
Nucleic Acids Res.
Radhakrishnan Sabarinathan, Hakim Tafer, Stefan E. Seemann, Ivo L. Hofacker, Peter F. Stadler, Jan Gorodkin
2011 J jnl
Bioinform.
Hakim Tafer, Fabian Amman, Florian Eggenhofer, Peter F. Stadler, Ivo L. Hofacker
2011 conf
BSB
David Langenberger, Sebastian Bartschat, Jana Hertel, Steve Hoffmann, Hakim Tafer, Peter F. Stadler
2011 J jnl
Bioinform.
Stephanie Kehr, Sebastian Bartschat, Peter F. Stadler, Hakim Tafer
2011 J jnl
Nucleic Acids Res.
Florian Eggenhofer, Hakim Tafer, Peter F. Stadler, Ivo L. Hofacker
2011 J jnl
Algorithms Mol. Biol.
Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker
2008 J jnl
Bioinform.
Hakim Tafer, Ivo L. Hofacker
2008 conf
BIRD
Ulrike Mückstein, Hakim Tafer, Stephan H. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker
2008 J jnl
Comput. Methods Programs Biomed.
Radka Svobodová Vareková, Ivan Bradác, Martin Plchút, Michal Skrdla, Michael Wacenovsky, Helmuth Mahr, Georg Mayer, Herbert Tanner, Hermann Brugger, Josef Withalm, Peter Lederer, Heinrich J. Huber, Gerhard Gierlinger, Ronald Graf, Hakim Tafer, Ivo L. Hofacker, Peter Schuster, Martin Polcík
2007 conf
German Conference on Bioinformatics
Hakim Tafer
2006 J jnl
Algorithms Mol. Biol.
Stephan H. Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker
2006 J jnl
Bioinform.
Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker
2005 conf
German Conference on Bioinformatics
Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker
redb/extractors/macho_extractors/macho_exports.py
← Index redb/extractors/macho_extractors/macho_exports.py python
import inspect
from datetime import datetime, timezone
from typing import Any

from redb.extractors.enum import Tag
from redb.extractors.macho_extractor import MachOExtractor
from redb.models.dataclasses import MachOExport


class MachOExportExtractor(MachOExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        macho=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            macho,
        )
        self.elastic_index = self.index_prefix + "-macho_exports"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def tag(self):
        return Tag.MACHO_EXPORT.value

    def _extract_exports(self, arch_name=None):
        """Extract export information from the MachO binary for a specific architecture."""
        self.log.debug(inspect.currentframe().f_code.co_name)

        if not self.macho:
            return None

        try:
            # Get exported symbols using new API for specific architecture
            exported_symbols = self.macho.get_exported_symbols(arch=arch_name)

            # Extract all exported symbols (may be empty for some binaries)
            # Handle None or empty dict
            if not exported_symbols:
                exported_symbols = {}
            all_symbols = []
            for dylib_name, symbols in exported_symbols.items():
                # Process symbol names
                for symbol in symbols:
                    if isinstance(symbol, bytes):
                        symbol = symbol.decode('utf-8', errors='replace')
                    all_symbols.append(symbol)

            # Create export dataclass
            macho_export = MachOExport(
                macho_exports_total=len(all_symbols),
                macho_export_symbols=all_symbols  # Empty list is fine, but None is not allowed for Array type
            )

            return macho_export

        except Exception as e:
            self.log.error(f"Error extracting MachO exports for arch {arch_name}: {e}")
            return None

    def extract(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        try:
            # Get architectures (macho is already parsed in base class)
            architectures = self.macho.get_architectures()
            if len(architectures) > 1:
                # FAT binary - return list of exports for each architecture
                results = []
                for arch_name in architectures:
                    exports = self._extract_exports(arch_name)
                    if exports:
                        exports.arch_identifier = arch_name
                        results.append(exports)
                return results
            else:
                # Single architecture - return single result
                return self._extract_exports(architectures[0] if architectures else None)
        except Exception as e:
            self.log.error(f"Error extracting MachO exports: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        if exporter_type == "ElasticsearchExporter":
            return self.extract()
        elif exporter_type == "ClickHouseExporter":
            if not self.macho:
                return None

            # Get architectures (macho is already parsed in base class)
            try:
                architectures = self.macho.get_architectures()
                is_fat = len(architectures) > 1
            except Exception as e:
                self.log.error(f"Could not get architectures: {e}")
                return None

            data = []
            current_time = datetime.now(timezone.utc)

            # Loop through each architecture (1 for single, multiple for FAT)
            for arch_name in architectures:
                # Get architecture-specific sha256
                try:
                    arch_general_info = self.macho.get_general_info(arch=arch_name)
                    arch_header_raw = self.macho.get_macho_header(arch=arch_name)
                    arch_sha256 = arch_general_info.get('SHA256', self.sha256)
                    arch_cputype_raw = arch_header_raw.get('cputype', 0) if arch_header_raw else 0
                except Exception as e:
                    self.log.warning(f"Could not get arch-specific data for {arch_name}: {e}")
                    arch_sha256 = self.sha256
                    arch_cputype_raw = 0

                # Get exports for this architecture
                macho_export = self._extract_exports(arch_name)
                if not macho_export:
                    continue

                data.append([
                    arch_sha256,                          # sha256 (arch-specific)
                    macho_export.macho_exports_total,     # macho_exports_total
                    macho_export.macho_export_symbols,    # macho_export_symbols (keep as array!)
                    current_time,                         # analysis_date
                ])

            column_names = [
                'sha256',
                'macho_exports_total', 'macho_export_symbols',
                'analysis_date'
            ]

            if not data:
                return None

            column_type_names = [
                'FixedString(64)',
                'UInt32', 'Array(Nullable(String))',
                'DateTime64(3, \'UTC\')'
            ]

            return (data, column_names, column_type_names)

        return None

    def get_clickhouse_table(self) -> str:
        return "redb_macho_exports"