Haiyuan Yu

26 papers B 1Journal 24
YearRankTypeTitle / Venue / Authors
2022 J jnl
A monotone finite volume element scheme for diffusion equations on triangular grids.
Comput. Math. Appl.
Cunyun Nie, Haiyuan Yu
2021 J jnl
Combining views for newly sequenced organisms.
Nat. Mach. Intell.
Yingying Zhang, Shayne D. Wierbowski, Haiyuan Yu
2021 J jnl
SAAMBE-SEQ: a sequence-based method for predicting mutation effect on protein-protein binding affinity.
Bioinform.
Gen Li, Swagata Pahari, Adithya Krishna Murthy, Siqi Liang, Robert Fragoza, Haiyuan Yu, Emil Alexov
2020 J jnl
A Difference Scheme and Its Error Analysis for a Poisson Equation with Nonlocal Boundary Conditions.
Complex.
Chunsheng Feng, Cunyun Nie, Haiyuan Yu, Liping Zhou, Karthikeyan Rajagopal
2020 J jnl
Revealing new therapeutic opportunities through drug target prediction: a class imbalance-tolerant machine learning approach.
Bioinform.
Siqi Liang, Haiyuan Yu, Jonathan D. Wren
2019 J jnl
Leveraging genetic interactions for adverse drug-drug interaction prediction.
PLoS Comput. Biol.
Sheng Qian, Siqi Liang, Haiyuan Yu
2017 J jnl
Error estimates on a finite volume method for diffusion problems with interface on rectangular grids.
Appl. Math. Comput.
Jie Peng, Shi Shu, Haiyuan Yu, Chunsheng Feng, Mingxian Kan, Ganghua Wang
2017 J jnl
GeMSTONE: orchestrated prioritization of human germline mutations in the cloud.
Nucleic Acids Res.
Siwei Chen, Juan F. Beltrán, Clara Esteban-Jurado, Sebastià Franch-Expósito, Sergi Castellví-Bel, Steven Lipkin, Xiaomu Wei, Haiyuan Yu
2017 J jnl
Superconvergence and asymptotic expansions for bilinear finite volume element approximation on non-uniform grids.
J. Comput. Appl. Math.
Cunyun Nie, Shi Shu, Haiyuan Yu, Wenhua Xia
2016 J jnl
BISQUE: locus- and variant-specific conversion of genomic, transcriptomic and proteomic database identifiers.
Bioinform.
Michael J. Meyer, Philip Geske, Haiyuan Yu
2015 J jnl
Some error estimates on the large jump asymptotic approach for the interface problem.
Appl. Math. Comput.
Cunyun Nie, Haiyuan Yu
2014 J jnl
A high order composite scheme for the second order elliptic problem with nonlocal boundary and its fast algorithm.
Appl. Math. Comput.
Cunyun Nie, Shi Shu, Haiyuan Yu, Qianjiang An
2013 J jnl
INstruct: a database of high-quality 3D structurally resolved protein interactome networks.
Bioinform.
Michael J. Meyer, Jishnu Das, Xiujuan Wang, Haiyuan Yu
2013 J jnl
Superconvergence and asymptotic expansion for semidiscrete bilinear finite volume element approximation of the parabolic problem.
Comput. Math. Appl.
Cunyun Nie, Shi Shu, Haiyuan Yu, Yuyue Yang
2013 J jnl
Target Essentiality and Centrality Characterize Drug Side Effects.
PLoS Comput. Biol.
Xiujuan Wang, Bram Thijssen, Haiyuan Yu
2012 J jnl
Genome-scale analysis of interaction dynamics reveals organization of biological networks.
Bioinform.
Jishnu Das, Jaaved Mohammed, Haiyuan Yu
2012 J jnl
HINT: High-quality protein interactomes and their applications in understanding human disease.
BMC Syst. Biol.
Jishnu Das, Haiyuan Yu
2007 J jnl
The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics.
PLoS Comput. Biol.
Haiyuan Yu, Philip M. Kim, Emmett Sprecher, Valery Trifonov, Mark Gerstein
2007 J jnl
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.
Bioinform.
Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein
2007 J jnl
Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications.
Bioinform.
Haiyuan Yu, Ronald Jansen, Gustavo Stolovitzky, Mark Gerstein
2006 J jnl
An algebraic multigrid method for finite element systems on criss-cross grids.
Adv. Comput. Math.
Shi Shu, Jinchao Xu, Ying Yang, Haiyuan Yu
2006 J jnl
Predicting interactions in protein networks by completing defective cliques.
Bioinform.
Haiyuan Yu, Alberto Paccanaro, Valery Trifonov, Mark Gerstein
2006 J jnl
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.
Bioinform.
Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein
2005 B conf
Inferring protein-protein interactions using interaction network topologies.
IJCNN
Alberto Paccanaro, Valery Trifonov, Haiyuan Yu, Mark Gerstein
2005 — ch.
Protein Interaction Prediction by Integrating Genomic Features and Protein Interaction Network Analysis.
Data Analysis and Visualization in Genomics and Proteomics
Long J. Lu, Yu Xia, Haiyuan Yu, Alexander Rives, Haoxin Lu, Falk Schubert, Mark Gerstein
2003 J jnl
Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data.
Bioinform.
Jiang Qian, C. Jimmy Lin, Nicholas M. Luscombe, Haiyuan Yu, Mark Gerstein