Haixu Tang - RankMe

123 papers A* 19A 6B 8C 1Misc 5Journal 68Unranked 15

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Large-Scale Comprehensive Measurement of AI-Generated Code in Real-World Repositories A Large-Scale Comprehensive Measurement of AI-Generated Code in Real-World Repositories. CoRR Tianhao Mao, Dongfang Zhao, Haixu Tang, Xiaofeng Wang, Hang Zhang
2026	J	`jnl`	Trojans in Artificial Intelligence (TrojAI) Final Report. CoRR Kristopher W. Reese, Taylor Kulp-McDowall, Michael Majurski, Timothy Blattner, Derek Juba, Peter Bajcsy, Antonio Cardone, Philippe Dessauw, Alden Dima, Anthony J. Kearsley, Melinda Kleczynski, Joel Vasanth, Walid Keyrouz, Chace Ashcraft, Neil Fendley, Ted Staley, Trevor Stout, Josh Carney, Greg Canal, William Redman, Aurora Schmidt, Cameron Hickert, William Paul, Jared Markowitz, Nathan Drenkow, David Shriver, Marissa Connor, Keltin Grimes, Marco Christiani, Hayden Moore, Jordan Widjaja, Kasimir Gabert, Uma Balakrishnan, Satyanadh Gundimada, John Jacobellis, Sandya Lakkur, Vitus Leung, Jon Roose, Casey Battaglino, Farinaz Koushanfar, Greg Fields, Xihe Gu, Yaman Jandali, Xinqiao Zhang, Tara Javidi, Akash Vartak, Tim Oates, Ben Erichson, Michael Mahoney, Rauf Izmailov, Xiangyu Zhang, Guangyu Shen, Siyuan Cheng, Shiqing Ma, Xiaofeng Wang, Haixu Tang, Di Tang, Xiaoyi Chen, Zihao Wang, Rui Zhu, Susmit Jha, Xiao Lin, Manoj Acharya, Weichao Zhou, Feisi Fu, Panagiota Kiourti, Chenyu Wang, Zijian Guo, H. M. Sabbir Ahmad, Wenchao Li, Chao Chen
2025	J	`jnl`	Adversarial Attack-Defense Co-Evolution for LLM Safety Alignment via Tree-Group Dual-Aware Search and Optimization. CoRR Xurui Li, Kaisong Song, Rui Zhu, Pin-Yu Chen, Haixu Tang
2025	J	`jnl`	ByzSFL: Achieving Byzantine-Robust Secure Federated Learning with Zero-Knowledge Proofs. CoRR Yongming Fan, Rui Zhu, Zihao Wang, Chenghong Wang, Haixu Tang, Ye Dong, Hyunghoon Cho, Lucila Ohno-Machado
2025	J	`jnl`	Designing a large language model for chemists. Patterns Xiaoyi Chen, Haixu Tang
2025	J	`jnl`	Enhancing Patient-Centric Communication: Leveraging LLMs to Simulate Patient Perspectives. CoRR Xinyao Ma, Rui Zhu, Zihao Wang, Jingwei Xiong, Qingyu Chen, Haixu Tang, L. Jean Camp, Lucila Ohno-Machado
2025	J	`jnl`	Hey, That's My Data! Label-Only Dataset Inference in Large Language Models. CoRR Chen Xiong, Zihao Wang, Rui Zhu, Tsung-Yi Ho, Pin-Yu Chen, Jingwei Xiong, Haixu Tang, Lucila Ohno-Machado
2025	A*	`conf`	Knowledge-Aware Co-Reasoning for Multidisciplinary Collaboration. EMNLP Xurui Li, Wanghaijiao, Kaisong Song, Rui Zhu, Haixu Tang
2025	J	`jnl`	Near-Lossless Model Compression Enables Longer Context Inference in DNA Large Language Models. CoRR Rui Zhu, Xiaopu Zhou, Haixu Tang, Stephen W. Scherer, Lucila Ohno-Machado
2025	J	`jnl`	Predicting the trend of SARS-CoV-2 mutation frequencies using historical data. Bioinform. Xinyu Zhou, Yi Yan, Kevin Hu, Haixu Tang, Yijie Wang, Lu Wang, Chi Zhang, Sha Cao
2025	A*	`conf`	Rigging the Foundation: Manipulating Pre-training for Advanced Membership Inference Attacks. SP Zihao Wang, Rui Zhu, Zhikun Zhang, Haixu Tang, Xiaofeng Wang
2025	A*	`conf`	Sharpness-Aware Initialization: Improving Differentially Private Machine Learning from First Principles. USENIX Security Symposium Zihao Wang, Rui Zhu, Dongruo Zhou, Zhikun Zhang, Xiaofeng Wang, Haixu Tang
2025	J	`jnl`	Strategic priorities for transformative progress in advancing biology with proteomics and artificial intelligence. CoRR Yingying Sun, Jun A, Zhiwei Liu, Rui Sun, Liujia Qian, Samuel H. Payne, Wout Bittremieux, Markus Ralser, Chen Li, Yi Chen, Zhen Dong, Yasset Pérez-Riverol, Asif Khan, Chris Sander, Ruedi Aebersold, Juan Antonio Vizcaíno, Jonathan R. Krieger, Jianhua Yao, Han Wen, Linfeng Zhang, Yunping Zhu, Yue Xuan, Benjamin Boyang Sun, Liang Qiao, Henning Hermjakob, Haixu Tang, Huanhuan Gao, Yamin Deng, Qing Zhong, Cheng Chang, Nuno Bandeira, Ming Li, Weinan E, Siqi Sun, Yuedong Yang, Gilbert S. Omenn, Yue Zhang, Ping Xu, Yan Fu, Xiaowen Liu, Christopher M. Overall, Yu Wang, Eric W. Deutsch, Luonan Chen, Jürgen Cox, Vadim Demichev, Fuchu He, Jiaxing Huang, Huilin Jin, Chao Liu, Nan Li, Zhongzhi Luan, Jiangning Song, Kaicheng Yu, Wanggen Wan, Tai Wang, Kang Zhang, Le Zhang, Peter A. Bell, Matthias Mann, Bing Zhang, Tiannan Guo
2024	A*	`conf`	DPAdapter: Improving Differentially Private Deep Learning through Noise Tolerance Pre-training. USENIX Security Symposium Zihao Wang, Rui Zhu, Dongruo Zhou, Zhikun Zhang, John Mitchell, Haixu Tang, Xiaofeng Wang
2024	J	`jnl`	DPAdapter: Improving Differentially Private Deep Learning through Noise Tolerance Pre-training. CoRR Zihao Wang, Rui Zhu, Dongruo Zhou, Zhikun Zhang, John Mitchell, Haixu Tang, Xiaofeng Wang
2024	—	`conf`	FairFix: Enhancing Fairness of Pre-Trained Deep Neural Networks with Scarce Data Resources. IDS Zhixin Li, Rui Zhu, Zihao Wang, Jiale Li, Kaiyuan Liu, Yue Qin, Yongming Fan, Mingyu Gu, Zhihui Lu, Jie Wu, Hongfeng Chai, Xiaofeng Wang, Haixu Tang
2024	A*	`conf`	Gradient Shaping: Enhancing Backdoor Attack Against Reverse Engineering. NDSS Rui Zhu, Di Tang, Siyuan Tang, Zihao Wang, Guanhong Tao, Shiqing Ma, Xiaofeng Wang, Haixu Tang
2024	J	`jnl`	LLM-Enhanced Software Patch Localization. CoRR Jinhong Yu, Yi Chen, Di Tang, Xiaozhong Liu, Xiaofeng Wang, Chen Wu, Haixu Tang
2024	B	`conf`	Protein Domain Embeddings for Fast and Accurate Similarity Search. RECOMB Benjamin Giovanni Iovino, Haixu Tang, Yuzhen Ye
2024	A*	`conf`	Racing on the Negative Force: Efficient Vulnerability Root-Cause Analysis through Reinforcement Learning on Counterexamples. USENIX Security Symposium Dandan Xu, Di Tang, Yi Chen, Xiaofeng Wang, Kai Chen, Haixu Tang, Longxing Li
2024	J	`jnl`	SpecEncoder: deep metric learning for accurate peptide identification in proteomics. Bioinform. Kaiyuan Liu, Chenghua Tao, Yuzhen Ye, Haixu Tang
2024	A*	`conf`	The Janus Interface: How Fine-Tuning in Large Language Models Amplifies the Privacy Risks. CCS Xiaoyi Chen, Siyuan Tang, Rui Zhu, Shijun Yan, Lei Jin, Zihao Wang, Liya Su, Zhikun Zhang, Xiaofeng Wang, Haixu Tang
2023	J	`jnl`	3DMolMS: prediction of tandem mass spectra from 3D molecular conformations. Bioinform. Yuhui Hong, Sujun Li, Christopher J. Welch, Shane Tichy, Yuzhen Ye, Haixu Tang
2023	J	`jnl`	Gradient Shaping: Enhancing Backdoor Attack Against Reverse Engineering. CoRR Rui Zhu, Di Tang, Siyuan Tang, Guanhong Tao, Shiqing Ma, Xiaofeng Wang, Haixu Tang
2023	J	`jnl`	Large Language Model Soft Ideologization via AI-Self-Consciousness. CoRR Xiaotian Zhou, Qian Wang, Xiaofeng Wang, Haixu Tang, Xiaozhong Liu
2023	J	`jnl`	Preface: RECOMB 2023 Special Issue. J. Comput. Biol. Haixu Tang
2023	B	`ed.`	Research in Computational Molecular Biology - 27th Annual International Conference, RECOMB 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings RECOMB Haixu Tang
2023	A*	`conf`	STINMatch: Semi-Supervised Semantic-Topological Iteration Network for Financial Risk Detection via News Label Diffusion. EMNLP Xurui Li, Yue Qin, Rui Zhu, Tianqianjin Lin, Yongming Fan, Yangyang Kang, Kaisong Song, Fubang Zhao, Changlong Sun, Haixu Tang, Xiaozhong Liu
2023	A*	`conf`	Selective Amnesia: On Efficient, High-Fidelity and Blind Suppression of Backdoor Effects in Trojaned Machine Learning Models. SP Rui Zhu, Di Tang, Siyuan Tang, Xiaofeng Wang, Haixu Tang
2023	A*	`conf`	Sherlock on Specs: Building LTE Conformance Tests through Automated Reasoning. USENIX Security Symposium Yi Chen, Di Tang, Yepeng Yao, Mingming Zha, Xiaofeng Wang, Xiaozhong Liu, Haixu Tang, Baoxu Liu
2023	J	`jnl`	The Janus Interface: How Fine-Tuning in Large Language Models Amplifies the Privacy Risks. CoRR Xiaoyi Chen, Siyuan Tang, Rui Zhu, Shijun Yan, Lei Jin, Zihao Wang, Liya Su, Xiaofeng Wang, Haixu Tang
2022	J	`jnl`	Locality-Sensitive Hashing-Based k-Mer Clustering for Identification of Differential Microbial Markers Related to Host Phenotype. J. Comput. Biol. Wontack Han, Haixu Tang, Yuzhen Ye
2022	A*	`conf`	Seeing the Forest for the Trees: Understanding Security Hazards in the 3GPP Ecosystem through Intelligent Analysis on Change Requests. USENIX Security Symposium Yi Chen, Di Tang, Yepeng Yao, Mingming Zha, Xiaofeng Wang, Xiaozhong Liu, Haixu Tang, Dongfang Zhao
2022	J	`jnl`	Selective Amnesia: On Efficient, High-Fidelity and Blind Suppression of Backdoor Effects in Trojaned Machine Learning Models. CoRR Rui Zhu, Di Tang, Siyuan Tang, Xiaofeng Wang, Haixu Tang
2022	J	`jnl`	The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition. J. Am. Medical Informatics Assoc. Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, Xiaofeng Wang, Arif Ozgun Harmanci, Miran Kim, Kai W. Post, Diyue Bu, Tyler Bath, Jihoon Kim, Weijie Liu, Hongbo Chen, Lucila Ohno-Machado
2022	J	`jnl`	Understanding Impacts of Task Similarity on Backdoor Attack and Detection. CoRR Di Tang, Rui Zhu, Xiaofeng Wang, Haixu Tang, Yi Chen
2021	A*	`conf`	Bookworm Game: Automatic Discovery of LTE Vulnerabilities Through Documentation Analysis. SP Yi Chen, Yepeng Yao, Xiaofeng Wang, Dandan Xu, Chang Yue, Xiaozhong Liu, Kai Chen, Haixu Tang, Baoxu Liu
2021	A*	`conf`	Demon in the Variant: Statistical Analysis of DNNs for Robust Backdoor Contamination Detection. USENIX Security Symposium Di Tang, Xiaofeng Wang, Haixu Tang, Kehuan Zhang
2021	J	`jnl`	Haplotype-based membership inference from summary genomic data. Bioinform. Diyue Bu, Xiaofeng Wang, Haixu Tang
2021	B	`conf`	HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework. CLOUD Chathura Widanage, Weijie Liu, Jiayu Li, Hongbo Chen, Xiaofeng Wang, Haixu Tang, Judy Fox
2021	J	`jnl`	HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework. CoRR Chathura Widanage, Weijie Liu, Jiayu Li, Hongbo Chen, Xiaofeng Wang, Haixu Tang, Judy Fox
2021	A	`conf`	Practical and Efficient in-Enclave Verification of Privacy Compliance. DSN Weijie Liu, Wenhao Wang, Hongbo Chen, Xiaofeng Wang, Yaosong Lu, Kai Chen, Xinyu Wang, Qintao Shen, Yi Chen, Haixu Tang
2021	A	`conf`	Towards Fair Cross-Domain Adaptation via Generative Learning. WACV Tongxin Wang, Zhengming Ding, Wei Shao, Haixu Tang, Kun Huang
2021	J	`jnl`	Understanding TEE Containers, Easy to Use? Hard to Trust. CoRR Weijie Liu, Hongbo Chen, Xiaofeng Wang, Zhi Li, Danfeng Zhang, Wenhao Wang, Haixu Tang
2020	A	`conf`	A Pragmatic Approach to Membership Inferences on Machine Learning Models. EuroS&P Yunhui Long, Lei Wang, Diyue Bu, Vincent Bindschaedler, Xiaofeng Wang, Haixu Tang, Carl A. Gunter, Kai Chen
2020	J	`jnl`	Bounding The Number of Linear Regions in Local Area for Neural Networks with ReLU Activations. CoRR Rui Zhu, Bo Lin, Haixu Tang
2020	J	`jnl`	Confidential Attestation: Efficient in-Enclave Verification of Privacy Policy Compliance. CoRR Weijie Liu, Wenhao Wang, Xiaofeng Wang, Xiaozhu Meng, Yaosong Lu, Hongbo Chen, Xinyu Wang, Qingtao Shen, Kai Chen, Haixu Tang, Yi Chen, Luyi Xing
2020	—	`conf`	Learning Structural Genetic Information via Graph Neural Embedding. ISBRA Yuan Xie, Yulong Pei, Yun Lu, Haixu Tang, Yuan Zhou
2020	Misc	`conf`	Navigating Ethical Quandaries with the Privacy Dilemma of Biomedical Datasets. PSB Gamze Gürsoy, Megan Doerr, John Wilbanks, Jennifer K. Wagner, Haixu Tang, Steven E. Brenner
2020	J	`jnl`	Overlap detection on long, error-prone sequencing reads via smooth q-gram. Bioinform. Yan Song, Haixu Tang, Haoyu Zhang, Qin Zhang
2020	J	`jnl`	Privacy-preserving construction of generalized linear mixed model for biomedical computation. Bioinform. Rui Zhu, Chao Jiang, Xiaofeng Wang, Shuang Wang, Hao Zheng, Haixu Tang
2020	J	`jnl`	Towards Fair Cross-Domain Adaptation via Generative Learning. CoRR Tongxin Wang, Zhengming Ding, Wei Shao, Haixu Tang, Kun Huang
2019	J	`jnl`	Algorithmic approaches to clonal reconstruction in heterogeneous cell populations. Quant. Biol. Wazim Mohammed Ismail, Etienne Nzabarushimana, Haixu Tang
2019	J	`jnl`	Demon in the Variant: Statistical Analysis of DNNs for Robust Backdoor Contamination Detection. CoRR Di Tang, Xiaofeng Wang, Haixu Tang, Kehuan Zhang
2019	J	`jnl`	GenoPri'17: International Workshop on Genome Privacy and Security. IEEE ACM Trans. Comput. Biol. Bioinform. Erman Ayday, Muhammad Naveed, Haixu Tang
2019	A*	`conf`	MBeacon: Privacy-Preserving Beacons for DNA Methylation Data. NDSS Inken Hagestedt, Yang Zhang, Mathias Humbert, Pascal Berrang, Haixu Tang, Xiaofeng Wang, Michael Backes
2019	Misc	`conf`	Session Introduction. PSB Gamze Gürsoy, Arif Ozgun Harmanci, Haixu Tang, Erman Ayday, Steven E. Brenner
2019	J	`jnl`	Toward Scalable Fully Homomorphic Encryption Through Light Trusted Computing Assistance. CoRR Wenhao Wang, Yichen Jiang, Qintao Shen, Weihao Huang, Hao Chen, Shuang Wang, Xiaofeng Wang, Haixu Tang, Kai Chen, Kristin E. Lauter, Dongdai Lin
2018	J	`jnl`	A Secure Alignment Algorithm for Mapping Short Reads to Human Genome. J. Comput. Biol. Yongan Zhao, Xiaofeng Wang, Haixu Tang
2018	J	`jnl`	Computational identification of micro-structural variations and their proteogenomic consequences in cancer. Bioinform. Yen-Yi Lin, Alexander Gawronski, Faraz Hach, Sujun Li, Ibrahim Numanagic, Iman Sarrafi, Swati Mishra, Andrew W. McPherson, Colin C. Collins, Milan Radovich, Haixu Tang, Süleyman Cenk Sahinalp
2018	B	`conf`	Constrained De Novo Sequencing of neo-Epitope Peptides Using Tandem Mass Spectrometry. RECOMB Sujun Li, Alex DeCourcy, Haixu Tang
2018	A	`conf`	Smooth q-Gram, and Its Applications to Detection of Overlaps among Long, Error-Prone Sequencing Reads. CIKM Haoyu Zhang, Qin Zhang, Haixu Tang
2018	J	`jnl`	Smooth q-Gram, and Its Applications to Detection of Overlaps among Long, Error-Prone Sequencing Reads. CoRR Haoyu Zhang, Qin Zhang, Haixu Tang
2018	J	`jnl`	Understanding Membership Inferences on Well-Generalized Learning Models. CoRR Yunhui Long, Vincent Bindschaedler, Lei Wang, Diyue Bu, Xiaofeng Wang, Haixu Tang, Carl A. Gunter, Kai Chen
2017	—	`conf`	A Sparse Latent Regression Approach for Integrative Analysis of Glycomic and Glycotranscriptomic Data. BCB Xuefu Wang, Sujun Li, Wenjing Peng, Yehia Mechref, Haixu Tang
2017	J	`jnl`	Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. J. Am. Medical Informatics Assoc. Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, W. Knox Carey, David D. Lloyd, Heidi Sofia, Dixie Baker, Paul Flicek, Suyash S. Shringarpure, Carlos D. Bustamante, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang, Xiaofeng Wang, Jean-Pierre Hubaux
2017	J	`jnl`	ISEScan: automated identification of insertion sequence elements in prokaryotic genomes. Bioinform. Zhiqun Xie, Haixu Tang
2017	J	`jnl`	Improving de novo metatranscriptome assembly via machine learning algorithms. Int. J. Comput. Biol. Drug Des. Hussein Mohsen, Haixu Tang, Yuzhen Ye
2017	A*	`conf`	Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. CCS Wenhao Wang, Guoxing Chen, Xiaorui Pan, Yinqian Zhang, Xiaofeng Wang, Vincent Bindschaedler, Haixu Tang, Carl A. Gunter
2017	J	`jnl`	Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. CoRR Wenhao Wang, Guoxing Chen, Xiaorui Pan, Yinqian Zhang, Xiaofeng Wang, Vincent Bindschaedler, Haixu Tang, Carl A. Gunter
2017	J	`jnl`	STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data. BMC Bioinform. Haixu Tang, Etienne Nzabarushimana
2016	J	`jnl`	A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics. PLoS Comput. Biol. Haixu Tang, Sujun Li, Yuzhen Ye
2016	J	`jnl`	MGEScan: a Galaxy-based system for identifying retrotransposons in genomes. Bioinform. Hyungro Lee, Minsu Lee, Wazim Mohammed Ismail, Mina Rho, Geoffrey C. Fox, Sangyoon Oh, Haixu Tang
2016	—	`conf`	On the Privacy Risks of Sharing Clinical Proteomics Data. CRI Sujun Li, Nuno Bandeira, Xiaofeng Wang, Haixu Tang
2016	J	`jnl`	Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis. Bioinform. Yuzhen Ye, Haixu Tang
2015	—	`conf`	A maximum-likelihood approach to absolute protein quantification in mass spectrometry. BCB Chao Ji, Yong Fuga Li, Earl P. Bellinger, Sujun Li, Randy J. Arnold, Predrag Radivojac, Haixu Tang
2015	J	`jnl`	Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery. J. Am. Medical Informatics Assoc. Yongan Zhao, Xiaofeng Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang
2015	A*	`conf`	Efficient Genome-Wide, Privacy-Preserving Similar Patient Query based on Private Edit Distance. CCS Xiao Shaun Wang, Yan Huang, Yongan Zhao, Haixu Tang, Xiaofeng Wang, Diyue Bu
2015	J	`jnl`	Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis. CoRR Yuzhen Ye, Haixu Tang
2014	J	`jnl`	A community assessment of privacy preserving techniques for human genomes. BMC Medical Informatics Decis. Mak. Xiaoqian Jiang, Yongan Zhao, Xiaofeng Fang, Bradley A. Malin, Shuang Wang, Lucila Ohno-Machado, Haixu Tang
2014	J	`jnl`	Detection of Structural Variants Involving Repetitive Regions in the Reference Genome. J. Comput. Biol. Heewook Lee, Ellen Popodi, Patricia L. Foster, Haixu Tang
2014	J	`jnl`	Gene finding in metatranscriptomic sequences. BMC Bioinform. Wazim Ismail, Yuzhen Ye, Haixu Tang
2014	—	`conf`	Identification and characterization of accessory genomes in bacterial species based on genome comparison and metagenomic recruitment. BIBM Mingjie Wang, Haixu Tang, Yuzhen Ye
2014	B	`conf`	Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions. CCGRID Yang Ruan, Geoffrey L. House, Saliya Ekanayake, Ursel Schutte, James D. Bever, Haixu Tang, Geoffrey C. Fox
2014	—	`conf`	Quasispecies reconstruction based on vertex coloring algorithms. BIBM Diyue Bu, Haixu Tang
2013	J	`jnl`	Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry. Bioinform. Chuan-Yih Yu, Anoop M. Mayampurath, Yunli Hu, Shiyue Zhou, Yehia Mechref, Haixu Tang
2013	—	`conf`	Improving phosphopeptide identification in shotgun proteomics by supervised filtering of peptide-spectrum matches. BCB Sujun Li, Randy J. Arnold, Haixu Tang, Predrag Radivojac
2013	J	`jnl`	Probabilistic Inference of Biochemical Reactions in Microbial Communities from Metagenomic Sequences. PLoS Comput. Biol. Dazhi Jiao, Yuzhen Ye, Haixu Tang
2012	J	`jnl`	A J. Comput. Biol. Mingjie Wang, Yuzhen Ye, Haixu Tang
2012	—	`conf`	DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences. BCB Yang Ruan, Saliya Ekanayake, Mina Rho, Haixu Tang, Seung-Hee Bae, Judy Qiu, Geoffrey C. Fox
2012	J	`jnl`	Detecting structural variants involving repetitive elements: capturing transposition events of IS elements in the genome of Escherichia coli. BMC Bioinform. Heewook Lee, Ellen Popodi, Patricia L. Foster, Haixu Tang
2012	A*	`conf`	Large-Scale Privacy-Preserving Mapping of Human Genomic Sequences on Hybrid Clouds. NDSS Yangyi Chen, Bo Peng, Xiaofeng Wang, Haixu Tang
2012	—	`conf`	Privacy Protection in Sharing Personal Genome Sequencing Data. HISB Xiaofeng Wang, Haixu Tang
2012	J	`jnl`	RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data. Bioinform. Yongan Zhao, Haixu Tang, Yuzhen Ye
2011	Misc	`conf`	Comparing Bacterial Communities Inferred from 16s Rrna Gene Sequencing and Shotgun Metagenomics. Pacific Symposium on Biocomputing Neethu Shah, Haixu Tang, Thomas G. Doak, Yuzhen Ye
2011	J	`jnl`	Enhanced peptide quantification using spectral count clustering and cluster abundance. BMC Bioinform. Seungmook Lee, Min-Seok Kwon, Hyoung-joo Lee, Young-Ki Paik, Haixu Tang, Jae K. Lee, Taesung Park
2011	J	`jnl`	RAPSearch: a Fast Protein Similarity Search Tool for Short Reads. BMC Bioinform. Yuzhen Ye, Jeong-Hyeon Choi, Haixu Tang
2011	A	`conf`	To Release or Not to Release: Evaluating Information Leaks in Aggregate Human-Genome Data. ESORICS Xiao-yong Zhou, Bo Peng, Yong Fuga Li, Yangyi Chen, Haixu Tang, Xiaofeng Wang
2009	J	`jnl`	A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. J. Comput. Biol. Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang
2009	J	`jnl`	An Orfome Assembly Approach to Metagenomics Sequences Analysis. J. Bioinform. Comput. Biol. Yuzhen Ye, Haixu Tang
2009	C	`conf`	Biomedical Case Studies in Data Intensive Computing. CloudCom Geoffrey C. Fox, Xiaohong Qiu, Scott Beason, Jong Youl Choi, Jaliya Ekanayake, Thilina Gunarathne, Mina Rho, Haixu Tang, Neil Devadasan, Gilbert C. Liu
2009	A*	`conf`	Learning your identity and disease from research papers: information leaks in genome wide association study. CCS Rui Wang, Yong Fuga Li, Xiaofeng Wang, Haixu Tang, Xiao-yong Zhou
2009	A*	`conf`	Privacy-preserving genomic computation through program specialization. CCS Rui Wang, Xiaofeng Wang, Zhou Li, Haixu Tang, Michael K. Reiter, Zheng Dong
2008	B	`conf`	A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. RECOMB Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang
2008	J	`jnl`	A machine-learning approach to combined evidence validation of genome assemblies. Bioinform. Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G. Gilbert, John Colbourne
2008	J	`jnl`	Fast and accurate identification of semi-tryptic peptides in shotgun proteomics. Bioinform. Pedro Alves, Randy J. Arnold, David E. Clemmer, Yixue Li, James P. Reilly, Quanhu Sheng, Haixu Tang, Zhiyin Xun, Rong Zeng, Predrag Radivojac
2007	Misc	`conf`	Advancement in Protein Inference from Shotgun Proteomics Using Peptide Detectability. Pacific Symposium on Biocomputing Pedro Alves, Randy J. Arnold, Milos V. Novotny, Predrag Radivojac, James P. Reilly, Haixu Tang
2007	—	`ch.`	Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments. Analysis of Biological Data: A Soft Computing Approach Haixu Tang, Sun Kim
2007	J	`jnl`	Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. IEEE ACM Trans. Comput. Biol. Bioinform. Degui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang
2007	J	`jnl`	dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis. Bioinform. Seung-Hee Bae, Haixu Tang, Jing Wu, Jun Xie, Sun Kim
2006	—	`conf`	A Computational Approach for the Identification of Site-Specific Protein Glycosylations Through Ion-Trap Mass Spectrometry. Systems Biology and Computational Proteomics Yin Wu, Yehia Mechref, Iveta Klouckova, Milos V. Novotny, Haixu Tang
2006	Misc	`conf`	A Machine Learning Approach to Predicting Peptide Fragmentation Spectra. Pacific Symposium on Biocomputing Randy J. Arnold, Narmada Jayasankar, Divya Aggarwal, Haixu Tang, Predrag Radivojac
2006	—	`conf`	A computational approach toward label-free protein quantification using predicted peptide detectability. ISMB (Supplement of Bioinformatics) Haixu Tang, Randy J. Arnold, Pedro Alves, Zhiyin Xun, David E. Clemmer, Milos V. Novotny, James P. Reilly, Predrag Radivojac
2006	—	`conf`	An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences. VDMB Rupali Patwardhan, Haixu Tang, Sun Kim, Mehmet M. Dalkilic
2006	J	`jnl`	Consensus Folding of Unaligned RNA Sequences Revisited. J. Comput. Biol. Vineet Bafna, Haixu Tang, Shaojie Zhang
2005	—	`conf`	Automated interpretation of MS/MS spectra of oligosaccharides. ISMB (Supplement of Bioinformatics) Haixu Tang, Yehia Mechref, Milos V. Novotny
2005	B	`conf`	Consensus Folding of Unaligned RNA Sequences Revisited. RECOMB Vineet Bafna, Haixu Tang, Shaojie Zhang
2004	J	`jnl`	Fragment assembly with short reads. Bioinform. Mark Chaisson, Pavel A. Pevzner, Haixu Tang
2004	J	`jnl`	MedBlast: searching articles related to a biological sequence. Bioinform. Qiang Tu, Haixu Tang, Dafu Ding
2002	A	`conf`	Splicing graphs and EST assembly problem. ISMB Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner
2001	J	`jnl`	A New Estimator of Significance of Correlation in Time Series Data. J. Comput. Biol. Semyon Kruglyak, Haixu Tang
2001	B	`conf`	A new approach to fragment assembly in DNA sequencing. RECOMB Pavel A. Pevzner, Haixu Tang, Michael S. Waterman
2001	—	`conf`	Fragment assembly with double-barreled data. ISMB (Supplement of Bioinformatics) Pavel A. Pevzner, Haixu Tang