Haim J. Wolfson

73 papers A* 8A 2B 7C 5Misc 1Journal 38Unranked 12

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	Funneling modulatory peptide design with generative models: Discovery and characterization of disruptors of calcineurin protein-protein interactions. PLoS Comput. Biol. Jérôme Tubiana, Lucia Adriana-Lifshits, Michael Nissan, Matan Gabay, Inbal Sher, Marina Sova, Haim J. Wolfson, Maayan Gal
2023	—	`conf`	SegmA: Residue Segmentation of cryo-EM density maps. BIBM Mark Rozanov, Haim J. Wolfson
2018	—	`conf`	AAnchor: CNN guided detection of anchor amino acids in high resolution cryo-EM density maps. BIBM Mark Rozanov, Haim J. Wolfson
2017	J	`jnl`	SnapDock - template-based docking by Geometric Hashing. Bioinform. Michael Estrin, Haim J. Wolfson
2016	—	`conf`	Accelerating protein-protein complex validation by GPU based funnel generation. BIBM Michael Zabejansky, Haim J. Wolfson
2016	J	`jnl`	Memdock: an α-helical membrane protein docking algorithm. Bioinform. Naama Hurwitz, Dina Schneidman-Duhovny, Haim J. Wolfson
2016	J	`jnl`	PinaColada: peptide-inhibitor ant colony ad-hoc design algorithm. Bioinform. Daniel Zaidman, Haim J. Wolfson
2015	B	`conf`	DockStar: A Novel ILP Based Integrative Method for Structural Modelling of Multimolecular Protein Complexes (Extended Abstract). RECOMB Naama Amir, Dan Cohen, Haim J. Wolfson
2015	J	`jnl`	DockStar: a novel ILP-based integrative method for structural modeling of multimolecular protein complexes. Bioinform. Naama Amir, Dan Cohen, Haim J. Wolfson
2011	J	`jnl`	GOSSIP: a method for fast and accurate global alignment of protein structures. Bioinform. Ilona Kifer, Ruth Nussinov, Haim J. Wolfson
2011	Misc	`conf`	Inexact Graph Matching by "Geodesic Hashing" for the Alignment of Pseudoknoted RNA Secondary Structures. PSC Mira Abraham, Haim J. Wolfson
2011	J	`jnl`	MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map. Nucleic Acids Res. Elina Tjioe, Keren Lasker, Ben M. Webb, Haim J. Wolfson, Andrej Sali
2011	C	`conf`	PepCrawler: A Fast RRT-Like Algorithm for High-Resolution Refinement and Binding-Affinity Estimation of Peptide Inhibitors - (Abstract). WABI Elad Donsky, Haim J. Wolfson
2011	J	`jnl`	PepCrawler: a fast RRT-based algorithm for high-resolution refinement and binding affinity estimation of peptide inhibitors. Bioinform. Elad Donsky, Haim J. Wolfson
2010	J	`jnl`	FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking. Nucleic Acids Res. Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson
2009	J	`jnl`	Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications. J. Chem. Inf. Model. Oranit Dror, Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2009	J	`jnl`	RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases. Nucleic Acids Res. Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
2008	J	`jnl`	Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules. J. Comput. Biol. Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2008	J	`jnl`	FireDock: a web server for fast interaction refinement in molecular docking. Nucleic Acids Res. Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson
2008	J	`jnl`	MolAxis: a server for identification of channels in macromolecules. Nucleic Acids Res. Eitan Yaffe, Dan Fishelovitch, Haim J. Wolfson, Dan Halperin, Ruth Nussinov
2008	J	`jnl`	MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions. Nucleic Acids Res. Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
2008	J	`jnl`	PharmaGist: a webserver for ligand-based pharmacophore detection. Nucleic Acids Res. Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2008	J	`jnl`	Structural similarity of genetically interacting proteins. BMC Syst. Biol. Oranit Dror, Dina Schneidman-Duhovny, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson, Roded Sharan
2007	B	`conf`	Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. RECOMB Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson
2007	J	`jnl`	EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM Maps. IEEE ACM Trans. Comput. Biol. Bioinform. Keren Lasker, Oranit Dror, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
2006	J	`jnl`	A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. Bioinform. Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov
2006	J	`jnl`	The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Res. Oranit Dror, Ruth Nussinov, Haim J. Wolfson
2006	J	`jnl`	The Multiple Common Point Set Problem and Its Application to Molecule Binding Pattern Detection. J. Comput. Biol. Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
2005	—	`conf`	ARTS: alignment of RNA tertiary structures. ECCB/JBI Oranit Dror, Ruth Nussinov, Haim J. Wolfson
2005	C	`conf`	Discovery of Protein Substructures in EM Maps. WABI Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson
2005	—	`conf`	MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces. CompLife Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
2005	J	`jnl`	Multiple Docking for Protein Structure Prediction. Int. J. Robotics Res. Yuval Inbar, Haim J. Wolfson, Ruth Nussinov
2005	J	`jnl`	PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Res. Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2005	B	`conf`	Recognition of Binding Patterns Common to a Set of Protein Structures. RECOMB Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
2005	J	`jnl`	SiteEngines: recognition and comparison of binding sites and protein-protein interfaces. Nucleic Acids Res. Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
2004	J	`jnl`	BioInfo3D: a suite of tools for structural bioinformatics. Nucleic Acids Res. Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, Haim J. Wolfson
2004	J	`jnl`	FlexProt: Alignment of Flexible Protein Structures Without a Predefinition of Hinge Regions. J. Comput. Biol. Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
2004	C	`conf`	Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations. WABI Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson
2003	—	`conf`	MASS: multiple structural alignment by secondary structures. ISMB (Supplement of Bioinformatics) Oranit Dror, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson
2003	—	`conf`	Protein structure prediction via combinatorial assembly of sub-structural units. ISMB (Supplement of Bioinformatics) Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson
2003	—	`conf`	Spatial Pattern Detection in Structural Bioinformatics. Mathematical Methods for Protein Structure Analysis and Design Haim J. Wolfson
2002	C	`conf`	Efficient Unbound Docking of Rigid Molecules. WABI Dina Duhovny, Ruth Nussinov, Haim J. Wolfson
2002	C	`conf`	MultiProt - A Multiple Protein Structural Alignment Algorithm. WABI Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
2001	J	`jnl`	A hierarchical, building-block-based computational scheme for protein structure prediction. IBM J. Res. Dev. Chung-Jung Tsai, Buyong Ma, Yuk Yin Sham, Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov
2001	J	`jnl`	MUSTA - A General, Efficient, Automated Method for Multiple Structure Alignment and Detection of Common Motifs: Application to Proteins. J. Comput. Biol. Nathaniel Leibowitz, Ruth Nussinov, Haim J. Wolfson
2001	J	`jnl`	Protein flexibility and electrostatic interactions. IBM J. Res. Dev. Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov
2000	A	`conf`	Alignment of Flexible Protein Structures. ISMB Maxim Shatsky, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson
1999	A	`conf`	Multiple Structural Alignment and Core Detection by Geometric Hashing. ISMB Nathaniel Leibowitz, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson
1998	J	`jnl`	A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility. J. Comput. Biol. Bilha Sandak, Ruth Nussinov, Haim J. Wolfson
1998	—	`conf`	[Invited Lecture] Structural motifs in the interior and on the surfaces of protein monomers and at protein-protein interfaces. German Conference on Bioinformatics Ruth Nussinov, Raquel Norel, Bilha Sandak, George Verbitsky, Haim J. Wolfson
1996	J	`jnl`	A new method of estimating shape similarity. Pattern Recognit. Lett. Konstantin Y. Kupeev, Haim J. Wolfson
1996	B	`conf`	Docking of Conformationally Flexible Proteins. CPM Bilha Sandak, Ruth Nussinov, Haim J. Wolfson
1995	J	`jnl`	An automated computer vision and robotics-based technique for 3-D flexible biomolecular docking and matching. Comput. Appl. Biosci. Bilha Sandak, Ruth Nussinov, Haim J. Wolfson
1995	J	`jnl`	Context-free attentional operators: The generalized symmetry transform. Int. J. Comput. Vis. Daniel Reisfeld, Haim J. Wolfson, Yehezkel Yeshurun
1994	—	`conf`	Docking of protein molecules. ICPR (2) Daniel Fischer, Shuo L. Lin, Ruth Nussinov, Haim J. Wolfson
1994	—	`conf`	On shape similarity. ICPR (1) Konstantin Y. Kupeev, Haim J. Wolfson
1994	—	`conf`	Partial matching of 3-D objects in CAD/CAM systems. ICPR (1) Efi Cohen, Haim J. Wolfson
1993	B	`conf`	3-D Docking of Protein Molecules. CPM Daniel Fischer, Raquel Norel, Ruth Nussinov, Haim J. Wolfson
1992	B	`conf`	3-D Substructure Matching in Protein Molecules. CPM Daniel Fischer, Ruth Nussinov, Haim J. Wolfson
1991	J	`jnl`	3-D curve matching using splines. J. Field Robotics Eyal Kishon, Trevor Hastie, Haim J. Wolfson
1991	A*	`conf`	Articulated object recognition, or: how to generalize the generalized Hough transform. CVPR Avinoam Beinglass, Haim J. Wolfson
1991	J	`jnl`	Generalizing the generalized hough transform. Pattern Recognit. Lett. Haim J. Wolfson
1991	A*	`conf`	On the error analysis of 'geometric hashing'. CVPR Yehezkel Lamdan, Haim J. Wolfson
1990	A*	`conf`	3-D Curve Matching Using Splines. ECCV Eyal Kishon, Trevor Hastie, Haim J. Wolfson
1990	J	`jnl`	Affine invariant model-based object recognition. IEEE Trans. Robotics Autom. Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson
1990	A*	`conf`	Detection of interest points using symmetry. ICCV Daniel Reisfeld, Haim J. Wolfson, Yehezkel Yeshurun
1990	A*	`conf`	Model-Based Object Recognition by Geometric Hashing. ECCV Haim J. Wolfson
1990	J	`jnl`	On curve matching. IEEE Trans. Pattern Anal. Mach. Intell. Haim J. Wolfson
1989	J	`jnl`	Solving jigsaw puzzles by a robot. IEEE Trans. Robotics Autom. Grigore C. Burdea, Haim J. Wolfson
1988	B	`conf`	An improved model-based matching method using footprints. ICPR Jiawei Hong, Haim J. Wolfson
1988	A*	`conf`	Geometric Hashing: A General And Efficient Model-based Recognition Scheme. ICCV Yehezkel Lamdan, Haim J. Wolfson
1988	A*	`conf`	Object recognition by affine invariant matching. CVPR Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson
1988	A*	`conf`	On recognition of 3-D objects from 2-D images. ICRA Yehezkel Lamdan, Jacob T. Schwartz, Haim J. Wolfson