Haim Ashkenazy

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2021 J jnl
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Nucleic Acids Res.
Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost
2017 J jnl
SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm.
Nucleic Acids Res.
Haim Ashkenazy, Eli Levy Karin, Zach Mertens, Reed A. Cartwright, Tal Pupko
2017 J jnl
TraitRateProp: a web server for the detection of trait-dependent evolutionary rate shifts in sequence sites.
Nucleic Acids Res.
Eli Levy Karin, Haim Ashkenazy, Susann Wicke, Tal Pupko, Itay Mayrose
2016 J jnl
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules.
Nucleic Acids Res.
Haim Ashkenazy, Shiran Abadi, Eric Martz, Ofer Chay, Itay Mayrose, Tal Pupko, Nir Ben-Tal
2015 J jnl
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters.
Nucleic Acids Res.
Itamar Sela, Haim Ashkenazy, Kazutaka Katoh, Tal Pupko
2015 J jnl
Using ConTemplate and the PDB to explore conformational space: on the detection of rare protein conformations.
BMC Bioinform.
Aya Narunsky, Haim Ashkenazy, Rachel Kolodny, Nir Ben-Tal
2014 J jnl
PredictProtein - an open resource for online prediction of protein structural and functional features.
Nucleic Acids Res.
Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost
2013 J jnl
CoPAP: Coevolution of Presence-Absence Patterns.
Nucleic Acids Res.
Ofir Cohen, Haim Ashkenazy, Eli Levy Karin, David Burstein, Tal Pupko
2012 J jnl
FastML: a web server for probabilistic reconstruction of ancestral sequences.
Nucleic Acids Res.
Haim Ashkenazy, Osnat Penn, Adi Doron-Faigenboim, Ofir Cohen, Gina Cannarozzi, Oren Zomer, Tal Pupko
2012 J jnl
Uncovering the co-evolutionary network among prokaryotic genes.
Bioinform.
Ofir Cohen, Haim Ashkenazy, David Burstein, Tal Pupko
2011 J jnl
Hidden conformations in protein structures.
Bioinform.
Haim Ashkenazy, Ron Unger, Yossef Kliger
2011 J jnl
Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site.
Bioinform.
Gilad Wainreb, Lior Wolf, Haim Ashkenazy, Yves Dehouck, Nir Ben-Tal
2010 J jnl
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.
Nucleic Acids Res.
Haim Ashkenazy, Elana Erez, Eric Martz, Tal Pupko, Nir Ben-Tal
2010 J jnl
GLOOME: gain loss mapping engine.
Bioinform.
Ofir Cohen, Haim Ashkenazy, Frida Belinky, Dorothée Huchon, Tal Pupko
2010 J jnl
GUIDANCE: a web server for assessing alignment confidence scores.
Nucleic Acids Res.
Osnat Penn, Eyal Privman, Haim Ashkenazy, Giddy Landan, Dan Graur, Tal Pupko
2010 J jnl
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.
Nucleic Acids Res.
Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal