Haider Iqbal

13 papers A* 1Journal 9Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
CoRR
James Alastair McLaughlin, Josh Lagrimas, Haider Iqbal, Helen E. Parkinson, Henriette Harmse
2025 J jnl
Bioinform.
James A. McLaughlin, Josh Lagrimas, Haider Iqbal, Helen E. Parkinson, Henriette Harmse
2025 conf
FOIS (Satellite Events)
Henriette Harmse, Haider Iqbal, Helen E. Parkinson, James Alastair McLaughlin
2025 J jnl
CoRR
Henriette Harmse, Haider Iqbal, Helen E. Parkinson, James Alastair McLaughlin
2024 conf
ICBO
Haider Iqbal, James Alastair McLaughlin, Helen E. Parkinson, Henriette Harmse
2022 J jnl
Nucleic Acids Res.
Pablo A. Moreno, Silvie Fexova, Nancy George, Jonathan R. Manning, Zhichao Miao, Suhaib Mohammed, Alfonso Muñoz-Pomer Fuentes, Anja Füllgrabe, Yalan Bi, Natassja Bush, Haider Iqbal, Upendra Kumbham, Andrey Solovyev, Lingyun Zhao, Ananth Prakash, David García-Seisdedos, Deepti Jaiswal Kundu, Shengbo Wang, Mathias Walzer, Laura Clarke, David Osumi-Sutherland, Marcela Karey Tello-Ruiz, Sunita Kumari, Doreen Ware, Jana Eliasova, Mark J. Arends, Martijn C. Nawijn, Kerstin B. Meyer, Tony Burdett, John C. Marioni, Sarah A. Teichmann, Juan Antonio Vizcaíno, Alvis Brazma, Irene Papatheodorou
2021 A* conf
NeurIPS
Hannah Rose Kirk, Yennie Jun, Filippo Volpin, Haider Iqbal, Elias Benussi, Frédéric A. Dreyer, Aleksandar Shtedritski, Yuki M. Asano
2021 J jnl
Nucleic Acids Res.
Ugis Sarkans, Anja Füllgrabe, Ahmed Ali, Awais Athar, Ehsan Behrangi, Nestor Diaz, Silvie Fexova, Nancy George, Haider Iqbal, Sandeep Kurri, Jhoan Munoz, Juan Camillo Rada, Irene Papatheodorou, Alvis Brazma
2021 J jnl
CoRR
Hannah Kirk, Yennie Jun, Haider Iqbal, Elias Benussi, Filippo Volpin, Frédéric A. Dreyer, Aleksandar Shtedritski, Yuki Markus Asano
2020 J jnl
Nucleic Acids Res.
Irene Papatheodorou, Pablo A. Moreno, Jonathan R. Manning, Alfonso Muñoz-Pomer Fuentes, Nancy George, Silvie Fexova, Nuno A. Fonseca, Anja Füllgrabe, Matthew Green, Ni Huang, Laura Huerta, Haider Iqbal, Monica Jianu, Suhaib Mohammed, Lingyun Zhao, Andrew F. Jarnuczak, Simon Jupp, John C. Marioni, Kerstin B. Meyer, Robert Petryszak, Cesar Augusto Prada Medina, Carlos Talavera-López, Sarah A. Teichmann, Juan Antonio Vizcaíno, Alvis Brazma
2019 J jnl
Nucleic Acids Res.
Awais Athar, Anja Füllgrabe, Nancy George, Haider Iqbal, Laura Huerta, Ahmed Ali, Catherine Snow, Nuno A. Fonseca, Robert Petryszak, Irene Papatheodorou, Ugis Sarkans, Alvis Brazma
2019 conf
CLEF (Working Notes)
Shaina Ashraf, Omer Javed, Muhammad Adeel, Haider Iqbal, Rao Muhammad Adeel Nawab
2018 J jnl
Nucleic Acids Res.
Marcela K. Tello-Ruiz, Sushma Naithani, Joshua C. Stein, Parul Gupta, Michael Campbell, Andrew Olson, Sharon Wei, Justin Preece, Matthew J. Geniza, Yinping Jiao, Young Koung Lee, Bo Wang, Joseph Mulvaney, Kapeel Chougule, Justin Elser, Noor Al-Bader, Sunita Kumari, James Thomason, Vivek Kumar, Daniel M. Bolser, Guy Naamati, Electra Tapanari, Nuno A. Fonseca, Laura Huerta, Haider Iqbal, Maria Keays, Alfonso Muñoz-Pomer Fuentes, Y. Amy Tang, Antonio Fabregat, Peter D'Eustachio, Joel Weiser, Lincoln D. Stein, Robert Petryszak, Irene Papatheodorou, Paul J. Kersey, Patti Lockhart, Crispin Taylor, Pankaj Jaiswal, Doreen Ware
redb/extractors/pe_extractors/pe_overlay.py
← Index redb/extractors/pe_extractors/pe_overlay.py python
from hashlib import md5, sha1, sha256
import inspect
from datetime import datetime, timezone
from typing import Any

import magic
from magika import Magika

from redb.extractors.enum import Tag
from redb.extractors.pe_extractor import PEExtractor
from redb.models.dataclasses import PEOverlay


class PEOverlayExtractor(PEExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        pe=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            pe,
        )
        self.elastic_index = self.index_prefix + "-pe_overlay"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def tag(self):
        return Tag.PE_OVERLAY.value

    def _extract_pe_overlay(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        overlay = self.pe.get_overlay()
        if overlay:
            return PEOverlay(
                _id=sha256(overlay).hexdigest(),
                overlay_size=len(overlay),
                overlay_entropy=self.calculate_entropy(overlay),
                overlay_offset=self.pe.get_overlay_data_start_offset(),
                overlay_mimetype=magic.from_buffer(overlay, mime=True),
                overlay_type=magic.from_buffer(overlay),
                overlay_magika=Magika().identify_bytes(overlay).output.ct_label,
                overlay_sha256=sha256(overlay).hexdigest(),
                overlay_sha1=sha1(overlay).hexdigest(),
                overlay_md5=md5(overlay).hexdigest(),
            )
        return None

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)
            overlay = self._extract_pe_overlay()
            # self.export_to_elastic([overlay])  # Let the exporters handle this
            return overlay
        except Exception as e:
            self.log.error(f"Error extracting PE overlay: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        if exporter_type == "ElasticsearchExporter":
            return self.extract()
        elif exporter_type == "ClickHouseExporter":
            overlay = self.extract()
            if overlay is None:
                return None
            
            data = []
            current_time = datetime.now(timezone.utc)
            
            data.append([
                self.sha256,              # sha256
                self.md5,                 # md5
                self.sha1,                # sha1
                overlay.overlay_size,     # overlay_size
                overlay.overlay_entropy,  # overlay_entropy
                overlay.overlay_offset,   # overlay_offset
                overlay.overlay_mimetype, # overlay_mimetype
                overlay.overlay_type,     # overlay_type
                overlay.overlay_magika,   # overlay_magika
                overlay.overlay_sha256,   # overlay_sha256
                overlay.overlay_sha1,     # overlay_sha1
                overlay.overlay_md5,      # overlay_md5
                current_time             # analysis_date
            ])
            
            column_names = [
                'sha256', 'md5', 'sha1', 'overlay_size', 'overlay_entropy',
                'overlay_offset', 'overlay_mimetype', 'overlay_type', 'overlay_magika',
                'overlay_sha256', 'overlay_sha1', 'overlay_md5',
                'analysis_date'
            ]
            
            if not data:
                return None

            column_type_names = [
                'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                'UInt64', 'Float64', 'UInt64',
                'LowCardinality(String)', 'LowCardinality(String)', 'LowCardinality(String)',
                'FixedString(64)', 'FixedString(40)', 'FixedString(32)',
                'DateTime64(3, \'UTC\')'
            ]

            return (data, column_names, column_type_names)

    def get_clickhouse_table(self) -> str:
        return "redb_pe_overlays"