Hai-Feng Chen

30 papers Journal 29Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
MotifBench: A standardized protein design benchmark for motif-scaffolding problems.
CoRR
Zhuoqi Zheng, Bo Zhang, Kieran Didi, Kevin K. Yang, Jason Yim, Joseph L. Watson, Hai-Feng Chen, Brian L. Trippe
2025 J jnl
Nonbonded Parameter Optimization Improving Simulation of Intrinsically Disordered Phosphoproteins.
J. Chem. Inf. Model.
Xinyao Zheng, Ge Song, Zhengxin Li, Bowen Duan, Bofan Zhu, Hai-Feng Chen
2025 J jnl
Personalized Energy Adaptation through Reweighting Learning (PEARL) Force Field for Intrinsically Disordered Proteins.
J. Chem. Inf. Model.
Xiaoyue Ji, Junjie Zhu, Bozitao Zhong, Zhengxin Li, Taeyoung Choi, Xiaochen Cui, Ting Wei, Hai-Feng Chen
2025 J jnl
ProDualNet: dual-target protein sequence design method based on protein language model and structure model.
Briefings Bioinform.
Liu Cheng, Ting Wei, Xiaochen Cui, Hai-Feng Chen, Zhangsheng Yu
2024 J jnl
Early Aggregation Mechanism of SOD1
J. Chem. Inf. Model.
Mueed Ur Rahman, Saira Bano, Xiaokun Hong, Ruo-Xu Gu, Hai-Feng Chen
2024 J jnl
Graphormer supervised
Briefings Bioinform.
Junxi Mu, Zhengxin Li, Bo Zhang, Qi Zhang, Jamshed Iqbal, Abdul Wadood, Ting Wei, Yan Feng, Hai-Feng Chen
2024 J jnl
Multi-indicator comparative evaluation for deep learning-based protein sequence design methods.
Bioinform.
Jinyu Yu, Junxi Mu, Ting Wei, Hai-Feng Chen
2024 J jnl
Phanto-IDP: compact model for precise intrinsically disordered protein backbone generation and enhanced sampling.
Briefings Bioinform.
Junjie Zhu, Zhengxin Li, Haowei Tong, Zhouyu Lu, Ningjie Zhang, Ting Wei, Hai-Feng Chen
2023 — conf
Development and Application of Offshore Trade Authenticity Verification Platform Based on Blockchain.
DSIE
Hai-Feng Chen, Lv Zhang, Shuai Wang, Shan-Shan Shi
2023 J jnl
PTMint database of experimentally verified PTM regulation on protein-protein interaction.
Bioinform.
Xiaokun Hong, Ningshan Li, Jiyang Lv, Yan Zhang, Jing Li, Jian Zhang, Hai-Feng Chen
2023 J jnl
Personal Precise Force Field for Intrinsically Disordered and Ordered Proteins Based on Deep Learning.
J. Chem. Inf. Model.
Xiaoyue Ji, Hao Liu, Yangpeng Zhang, Jun Chen, Hai-Feng Chen
2023 J jnl
Phosphorylation Modification Force Field FB18CMAP Improving Conformation Sampling of Phosphoproteins.
J. Chem. Inf. Model.
Ge Song, Bozitao Zhong, Bo Zhang, Ashfaq Ur Rehman, Hai-Feng Chen
2023 J jnl
Phosphorylation Regulation Mechanism of β2 Integrin for the Binding of Filamin Revealed by Markov State Model.
J. Chem. Inf. Model.
Xiaokun Hong, Kaiyuan Song, Mueed Ur Rahman, Ting Wei, Yan Zhang, Lin-Tai Da, Hai-Feng Chen
2023 J jnl
Research and Evaluation of the Allosteric Protein-Specific Force Field Based on a Pre-Training Deep Learning Model.
J. Chem. Inf. Model.
Xiaoyue Ji, Xiaochen Cui, Zhengxin Li, Taeyoung Choi, Ying Wang, Wen Xiao, Yunshuo Zhao, Jinyin Zha, Jian Zhang, Hai-Feng Chen, Zhengtian Yu
2022 J jnl
Polarizable Force Field of Intrinsically Disordered Proteins with CMAP and Reweighting Optimization.
J. Chem. Inf. Model.
Xiaochen Cui, Hao Liu, Hai-Feng Chen
2022 J jnl
RNA-Specific Force Field Optimization with CMAP and Reweighting.
J. Chem. Inf. Model.
Jun Chen, Hao Liu, Xiaochen Cui, Zhengxin Li, Hai-Feng Chen
2021 J jnl
Balanced Solvent Model for Intrinsically Disordered and Ordered Proteins.
J. Chem. Inf. Model.
Junxi Mu, Zhengsong Pan, Hai-Feng Chen
2021 J jnl
Recent Force Field Strategies for Intrinsically Disordered Proteins.
J. Chem. Inf. Model.
Junxi Mu, Hao Liu, Jian Zhang, Ray Luo, Hai-Feng Chen
2020 J jnl
Comparison and Evaluation of Force Fields for Intrinsically Disordered Proteins.
J. Chem. Inf. Model.
Mueed Ur Rahman, Ashfaq Ur Rehman, Hao Liu, Hai-Feng Chen
2020 J jnl
Environment-Specific Force Field for Intrinsically Disordered and Ordered Proteins.
J. Chem. Inf. Model.
Dong Song, Hao Liu, Ray Luo, Hai-Feng Chen
2019 J jnl
Dynamical important residue network (DIRN): network inference via conformational change.
Bioinform.
Quan Li, Ray Luo, Hai-Feng Chen
2019 J jnl
Exploring the Pyrazinamide Drug Resistance Mechanism of Clinical Mutants T370P and W403G in Ribosomal Protein S1 ofMycobacterium tuberculosis.
J. Chem. Inf. Model.
Ashfaq Ur Rehman, Muhammad Tahir Khan, Hao Liu, Abdul Wadood, Shaukat Iqbal Malik, Hai-Feng Chen
2019 J jnl
Gain-of-Function SHP2 E76Q Mutant Rescuing Autoinhibition Mechanism Associated with Juvenile Myelomonocytic Leukemia.
J. Chem. Inf. Model.
Ashfaq Ur Rehman, Humaira Rafiq, Mueed Ur Rahman, Jiayi Li, Hao Liu, Shenggan Luo, Taaha Arshad, Abdul Wadood, Hai-Feng Chen
2019 J jnl
Residue-Specific Force Field Improving the Sample of Intrinsically Disordered Proteins and Folded Proteins.
J. Chem. Inf. Model.
Sheng Yang, Hao Liu, Yangpeng Zhang, Hui Lu, Hai-Feng Chen
2018 J jnl
Inhibitory mechanism of 5-bromo-3-indoleacetic acid for non-structural-3 helicase hepatitis C virus with dynamics correlation network analysis.
Comput. Biol. Chem.
Mueed Ur Rahman, Ashfaq Ur Rehman, Hao Liu, Hai-Feng Chen
2017 J jnl
Allosteric Autoinhibition Pathway in Transcription Factor ERG: Dynamics Network and Mutant Experimental Evaluations.
J. Chem. Inf. Model.
Wei Ye, Tianle Qian, Hao Liu, Ray Luo, Hai-Feng Chen
2017 J jnl
The IDP-Specific Force Field
J. Chem. Inf. Model.
Dong Song, Ray Luo, Hai-Feng Chen
2016 J jnl
Synergistic Allosteric Mechanism of Fructose-1, 6-bisphosphate and Serine for Pyruvate Kinase M2 via Dynamics Fluctuation Network Analysis.
J. Chem. Inf. Model.
Jingxu Yang, Hao Liu, Xiaorui Liu, Chengbo Gu, Ray Luo, Hai-Feng Chen
2015 J jnl
Test and Evaluation of
J. Chem. Inf. Model.
Wei Ye, Dingjue Ji, Wei Wang, Ray Luo, Hai-Feng Chen
2009 J jnl
Aggregation mechanism investigation of the GIFQINS cross-beta amyloid fibril.
Comput. Biol. Chem.
Hai-Feng Chen