Hai-Feng Chen - RankMe

30 papers Journal 29Unranked 1

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	MotifBench: A standardized protein design benchmark for motif-scaffolding problems. CoRR Zhuoqi Zheng, Bo Zhang, Kieran Didi, Kevin K. Yang, Jason Yim, Joseph L. Watson, Hai-Feng Chen, Brian L. Trippe
2025	J	`jnl`	Nonbonded Parameter Optimization Improving Simulation of Intrinsically Disordered Phosphoproteins. J. Chem. Inf. Model. Xinyao Zheng, Ge Song, Zhengxin Li, Bowen Duan, Bofan Zhu, Hai-Feng Chen
2025	J	`jnl`	Personalized Energy Adaptation through Reweighting Learning (PEARL) Force Field for Intrinsically Disordered Proteins. J. Chem. Inf. Model. Xiaoyue Ji, Junjie Zhu, Bozitao Zhong, Zhengxin Li, Taeyoung Choi, Xiaochen Cui, Ting Wei, Hai-Feng Chen
2025	J	`jnl`	ProDualNet: dual-target protein sequence design method based on protein language model and structure model. Briefings Bioinform. Liu Cheng, Ting Wei, Xiaochen Cui, Hai-Feng Chen, Zhangsheng Yu
2024	J	`jnl`	Early Aggregation Mechanism of SOD1 J. Chem. Inf. Model. Mueed Ur Rahman, Saira Bano, Xiaokun Hong, Ruo-Xu Gu, Hai-Feng Chen
2024	J	`jnl`	Graphormer supervised Briefings Bioinform. Junxi Mu, Zhengxin Li, Bo Zhang, Qi Zhang, Jamshed Iqbal, Abdul Wadood, Ting Wei, Yan Feng, Hai-Feng Chen
2024	J	`jnl`	Multi-indicator comparative evaluation for deep learning-based protein sequence design methods. Bioinform. Jinyu Yu, Junxi Mu, Ting Wei, Hai-Feng Chen
2024	J	`jnl`	Phanto-IDP: compact model for precise intrinsically disordered protein backbone generation and enhanced sampling. Briefings Bioinform. Junjie Zhu, Zhengxin Li, Haowei Tong, Zhouyu Lu, Ningjie Zhang, Ting Wei, Hai-Feng Chen
2023	—	`conf`	Development and Application of Offshore Trade Authenticity Verification Platform Based on Blockchain. DSIE Hai-Feng Chen, Lv Zhang, Shuai Wang, Shan-Shan Shi
2023	J	`jnl`	PTMint database of experimentally verified PTM regulation on protein-protein interaction. Bioinform. Xiaokun Hong, Ningshan Li, Jiyang Lv, Yan Zhang, Jing Li, Jian Zhang, Hai-Feng Chen
2023	J	`jnl`	Personal Precise Force Field for Intrinsically Disordered and Ordered Proteins Based on Deep Learning. J. Chem. Inf. Model. Xiaoyue Ji, Hao Liu, Yangpeng Zhang, Jun Chen, Hai-Feng Chen
2023	J	`jnl`	Phosphorylation Modification Force Field FB18CMAP Improving Conformation Sampling of Phosphoproteins. J. Chem. Inf. Model. Ge Song, Bozitao Zhong, Bo Zhang, Ashfaq Ur Rehman, Hai-Feng Chen
2023	J	`jnl`	Phosphorylation Regulation Mechanism of β2 Integrin for the Binding of Filamin Revealed by Markov State Model. J. Chem. Inf. Model. Xiaokun Hong, Kaiyuan Song, Mueed Ur Rahman, Ting Wei, Yan Zhang, Lin-Tai Da, Hai-Feng Chen
2023	J	`jnl`	Research and Evaluation of the Allosteric Protein-Specific Force Field Based on a Pre-Training Deep Learning Model. J. Chem. Inf. Model. Xiaoyue Ji, Xiaochen Cui, Zhengxin Li, Taeyoung Choi, Ying Wang, Wen Xiao, Yunshuo Zhao, Jinyin Zha, Jian Zhang, Hai-Feng Chen, Zhengtian Yu
2022	J	`jnl`	Polarizable Force Field of Intrinsically Disordered Proteins with CMAP and Reweighting Optimization. J. Chem. Inf. Model. Xiaochen Cui, Hao Liu, Hai-Feng Chen
2022	J	`jnl`	RNA-Specific Force Field Optimization with CMAP and Reweighting. J. Chem. Inf. Model. Jun Chen, Hao Liu, Xiaochen Cui, Zhengxin Li, Hai-Feng Chen
2021	J	`jnl`	Balanced Solvent Model for Intrinsically Disordered and Ordered Proteins. J. Chem. Inf. Model. Junxi Mu, Zhengsong Pan, Hai-Feng Chen
2021	J	`jnl`	Recent Force Field Strategies for Intrinsically Disordered Proteins. J. Chem. Inf. Model. Junxi Mu, Hao Liu, Jian Zhang, Ray Luo, Hai-Feng Chen
2020	J	`jnl`	Comparison and Evaluation of Force Fields for Intrinsically Disordered Proteins. J. Chem. Inf. Model. Mueed Ur Rahman, Ashfaq Ur Rehman, Hao Liu, Hai-Feng Chen
2020	J	`jnl`	Environment-Specific Force Field for Intrinsically Disordered and Ordered Proteins. J. Chem. Inf. Model. Dong Song, Hao Liu, Ray Luo, Hai-Feng Chen
2019	J	`jnl`	Dynamical important residue network (DIRN): network inference via conformational change. Bioinform. Quan Li, Ray Luo, Hai-Feng Chen
2019	J	`jnl`	Exploring the Pyrazinamide Drug Resistance Mechanism of Clinical Mutants T370P and W403G in Ribosomal Protein S1 ofMycobacterium tuberculosis. J. Chem. Inf. Model. Ashfaq Ur Rehman, Muhammad Tahir Khan, Hao Liu, Abdul Wadood, Shaukat Iqbal Malik, Hai-Feng Chen
2019	J	`jnl`	Gain-of-Function SHP2 E76Q Mutant Rescuing Autoinhibition Mechanism Associated with Juvenile Myelomonocytic Leukemia. J. Chem. Inf. Model. Ashfaq Ur Rehman, Humaira Rafiq, Mueed Ur Rahman, Jiayi Li, Hao Liu, Shenggan Luo, Taaha Arshad, Abdul Wadood, Hai-Feng Chen
2019	J	`jnl`	Residue-Specific Force Field Improving the Sample of Intrinsically Disordered Proteins and Folded Proteins. J. Chem. Inf. Model. Sheng Yang, Hao Liu, Yangpeng Zhang, Hui Lu, Hai-Feng Chen
2018	J	`jnl`	Inhibitory mechanism of 5-bromo-3-indoleacetic acid for non-structural-3 helicase hepatitis C virus with dynamics correlation network analysis. Comput. Biol. Chem. Mueed Ur Rahman, Ashfaq Ur Rehman, Hao Liu, Hai-Feng Chen
2017	J	`jnl`	Allosteric Autoinhibition Pathway in Transcription Factor ERG: Dynamics Network and Mutant Experimental Evaluations. J. Chem. Inf. Model. Wei Ye, Tianle Qian, Hao Liu, Ray Luo, Hai-Feng Chen
2017	J	`jnl`	The IDP-Specific Force Field J. Chem. Inf. Model. Dong Song, Ray Luo, Hai-Feng Chen
2016	J	`jnl`	Synergistic Allosteric Mechanism of Fructose-1, 6-bisphosphate and Serine for Pyruvate Kinase M2 via Dynamics Fluctuation Network Analysis. J. Chem. Inf. Model. Jingxu Yang, Hao Liu, Xiaorui Liu, Chengbo Gu, Ray Luo, Hai-Feng Chen
2015	J	`jnl`	Test and Evaluation of J. Chem. Inf. Model. Wei Ye, Dingjue Ji, Wei Wang, Ray Luo, Hai-Feng Chen
2009	J	`jnl`	Aggregation mechanism investigation of the GIFQINS cross-beta amyloid fibril. Comput. Biol. Chem. Hai-Feng Chen