Habtom W. Ressom

83 papers A 1B 13C 4Misc 3Journal 18Unranked 42

Year	Rank	Type	Title / Venue / Authors
2023	—	`conf`	Bayesian Approach Integrating Prior Knowledge for Identifying miRNA-mRNA Interactions in Hepatocellular Carcinoma. BIBM Yichen Guo, Marie Denis, Rency S. Varghese, Sidharth S. Jain, Mahlet G. Tadesse, Habtom W. Ressom
2023	—	`conf`	Deep Learning Based Metabolite Annotation. EMBC Hoi Yan Katharine Chau, Hongyu Ao, Xinran Zhang, Shijinqiu Gao, Rency S. Varghese, Habtom W. Ressom
2022	—	`conf`	A Bayesian two-step integrative procedure incorporating prior knowledge for the identification of miRNA-mRNAs involved in hepatocellular carcinoma. EMBC Marie Denis, Rency S. Varghese, Megan E. Barefoot, Mahlet G. Tadesse, Habtom W. Ressom
2022	—	`conf`	Cell-type Deconvolution and Age Estimation Using DNA Methylation Reveals NK Cell Deficiency in the Hepatocellular Carcinoma Microenvironment. BIBM Sidharth S. Jain, Megan E. Barefoot, Rency S. Varghese, Habtom W. Ressom
2020	—	`conf`	Epigenetic changes associated with mechanisms of disparities in hepatocellular carcinoma. EMBC Rency S. Varghese, Yuan Zhou, Yifan Chen, Megan E. Barefoot, Mahlet G. Tadesse, Habtom W. Ressom
2020	—	`conf`	Integrative Analysis to Identify Race-Associated Metabolite Biomarkers for Hepatocellular Carcinoma. EMBC Yifan Chen, Megan E. Barefoot, Rency S. Varghese, Kuijun Wang, Cristina Di Poto, Habtom W. Ressom
2019	—	`conf`	Integrative Analysis of DNA Methylation and Gene Expression Patterns in Tissues from Hepatocellular Carcinoma Patients. BIBM Megan E. Barefoot, Yifan Chen, Rency S. Varghese, Yuan Zhou, Habtom W. Ressom
2019	—	`conf`	MOTA: Multi-omic integrative analysis for biomarker discovery. EMBC Ziling Fan, Yuan Zhou, Habtom W. Ressom
2019	—	`conf`	Metabolite Identification Using Artificial Neural Network. BIBM Ziling Fan, Kian Ghaffari, Amber Alley, Habtom W. Ressom
2019	—	`conf`	Multi-omic Pathway and Network Analysis to Identify Biomarkers for Hepatocellular Carcinoma. EMBC Megan E. Barefoot, Rency S. Varghese, Yuan Zhou, Cristina Di Poto, Alessia Ferrarini, Habtom W. Ressom
2018	—	`conf`	INDEED: R package for network based differential expression analysis. BIBM Zhenzhi Li, Yiming Zuo, Chaohui Xu, Rency S. Varghese, Habtom W. Ressom
2017	J	`jnl`	Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO. BMC Bioinform. Yiming Zuo, Yi Cui, Guoqiang Yu, Ruijiang Li, Habtom W. Ressom
2016	J	`jnl`	Integrative Analysis of Proteomic, Glycomic, and Metabolomic Data for Biomarker Discovery. IEEE J. Biomed. Health Informatics Minkun Wang, Guoqiang Yu, Habtom W. Ressom
2016	—	`conf`	Metabolomic data deconvolution using probabilistic purification models. BIBM Minkun Wang, Cristina Di Poto, Alessia Ferrarini, Guoqiang Yu, Habtom W. Ressom
2016	—	`conf`	Multi-omic approaches for characterization of hepatocellular carcinoma. EMBC Habtom W. Ressom, Cristina Di Poto, Alessia Ferrarini, Yunli Hu, Mohammad R. Nezami Ranjbar, Ehwang Song, Rency S. Varghese, Minkun Wang, Shiyue Zhou, Rui Zhu, Yiming Zuo, Mahlet G. Tadesse, Yehia Mechref
2016	—	`conf`	Network-based analysis of reverse phase protein array data. BIBM Rency S. Varghese, Yiming Zuo, Yi Zhao, Yong-Wei Zhang, Sandra A. Jablonski, Mariaelena Pierobon, Emanuel F. Petricoin, Habtom W. Ressom, Louis M. Weiner
2015	J	`jnl`	Bayesian Normalization Model for Label-Free Quantitative Analysis by LC-MS. IEEE ACM Trans. Comput. Biol. Bioinform. Mohammad R. Nezami Ranjbar, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom
2015	—	`conf`	Integrating prior biological knowledge and graphical LASSO for network inference. BIBM Yiming Zuo, Guoqiang Yu, Habtom W. Ressom
2015	—	`conf`	Integrative analysis of LC-MS based glycomic and proteomic data. EMBC Minkun Wang, Guoqiang Yu, Habtom W. Ressom
2015	—	`conf`	Purification of LC/GC-MS based biomolecular expression profiles using a topic model. BIBM Minkun Wang, Tsung-Heng Tsai, Guoqiang Yu, Habtom W. Ressom
2015	J	`jnl`	SIMAT: GC-SIM-MS data analysis tool. BMC Bioinform. Mohammad R. Nezami Ranjbar, Cristina Di Poto, Yue Joseph Wang, Habtom W. Ressom
2014	—	`conf`	A new approach for multi-omic data integration. BIBM Yiming Zuo, Guoqiang Yu, Chi Zhang, Habtom W. Ressom
2013	—	`ed.`	2013 IEEE International Conference on Bioinformatics and Biomedicine, Shanghai, China, December 18-21, 2013 BIBM Guo-Zheng Li, Sunghoon Kim, Michael Hughes, Geoffrey J. McLachlan, Hongye Sun, Xiaohua Hu, Habtom W. Ressom, Baoyan Liu, Michael N. Liebman
2013	—	`conf`	GPA: An algorithm for LC/MS based glycan profile annotation. BIBM Minkun Wang, Guoqiang Yu, Yehia Mechref, Habtom W. Ressom
2013	J	`jnl`	Module-based breast cancer classification. Int. J. Data Min. Bioinform. Yuji Zhang, Jianhua Xuan, Robert Clarke, Habtom W. Ressom
2013	J	`jnl`	Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards. Bioinform. Tsung-Heng Tsai, Mahlet G. Tadesse, Cristina Di Poto, Lewis K. Pannell, Yehia Mechref, Yue Joseph Wang, Habtom W. Ressom
2013	J	`jnl`	Profile-Based LC-MS Data Alignment-A Bayesian Approach. IEEE ACM Trans. Comput. Biol. Bioinform. Tsung-Heng Tsai, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom
2013	—	`conf`	Reconstructing biological networks using low order partial correlation. BIBM Yiming Zuo, Guoqiang Yu, Mahlet G. Tadesse, Habtom W. Ressom
2012	—	`conf`	Evaluation of normalization methods for analysis of LC-MS data. BIBM Workshops Mohammad R. Nezami Ranjbar, Yi Zhao, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom
2012	J	`jnl`	Identification of aberrant pathways and network activities from high-throughput data. Briefings Bioinform. Jinlian Wang, Yuji Zhang, Catalin Marian, Habtom W. Ressom
2012	—	`conf`	Integration of multiple data sources for identifying functional modules using Bayesian network. GENSiPS Jinlian Wang, Hongyan Yuan, Mahlet G. Tadesse, Habtom W. Ressom
2012	—	`conf`	Normalization of LC-MS data using Gaussian process. GENSiPS Mohammad R. Nezami Ranjbar, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom
2012	—	`conf`	Variability assessment of LC-MS experiments and its application to experimental design and difference detection. GENSiPS Yi Zhao, Tsung-Heng Tsai, Cristina Di Poto, Lewis K. Pannell, Mahlet G. Tadesse, Habtom W. Ressom
2011	—	`conf`	A Computational Pipeline for LC-MS/MS Based Metabolite Identification. BIBM Bin Zhou, Jun Feng Xiao, Habtom W. Ressom
2011	—	`conf`	Analysis of aberrant pathways using HCC candidate biomarkers identified from high-throuput omics studies. BIBM Workshops Jinlian Wang, Habtom W. Ressom
2011	—	`conf`	Bayesian Alignment Model for LC-MS Data. BIBM Tsung-Heng Tsai, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom
2011	—	`conf`	Meta-analysis of LC-MS based metabolomic experiments. BIBM Workshops Rency S. Varghese, Bin Zhou, Habtom W. Ressom
2011	J	`jnl`	Probabilistic Mixture Regression Models for Alignment of LC-MS Data. IEEE ACM Trans. Comput. Biol. Bioinform. Getachew K. Befekadu, Mahlet G. Tadesse, Tsung-Heng Tsai, Habtom W. Ressom
2011	—	`conf`	Quality assessment of LC-MS metabolomic data. BIBM Workshops Mohammad R. Nezami Ranjbar, Yue Joseph Wang, Habtom W. Ressom
2011	Misc	`conf`	Workshop Introduction. Pacific Symposium on Biocomputing Michael F. Ochs, Rachel Karchin, Habtom W. Ressom, Robert Gentleman
2010	—	`conf`	A new method for alignment of LC-MALDI-TOF data. BIBM Zhiqun Tang, Lihua Zhang, Amrita K. Cheema, Habtom W. Ressom
2010	—	`conf`	Metabolomic profiling for biomarker discovery in pancreatic cancer. BIBM Prabhjit Kaur, Kathryn Sheikh, Alexander Kirilyuk, Ksenia Kirilyuk, Habtom W. Ressom, Amrita K. Cheema, Bhaskar Kallakury
2010	—	`conf`	Module-based biomarker discovery in breast cancer. BIBM Yuji Zhang, Jianhua Jason Xuan, Robert Clarke, Habtom W. Ressom
2010	—	`conf`	Using a spike-in experiment to evaluate analysis of LC-MS data. BIBM Workshops Leepika Tuli, Tsung-Heng Tsai, Rency S. Varghese, Amrita K. Cheema, Habtom W. Ressom
2009	J	`jnl`	Analysis of LC-MS Data Using probabilitic-based mixture regression models (Analyse von LC-MS-Daten mit wahrscheinlichkeitsbasierter Mischung von Regressionsmodellen). Autom. Habtom W. Ressom, Getachew K. Befekadu, Mahlet G. Tadesse
2009	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Michael F. Ochs, John Quackenbush, Ramana V. Davuluri, Habtom W. Ressom
2008	Misc	`conf`	Analysis of MALDI-TOF Spectrometry Data for Detection of Glycan Biomarkers. Pacific Symposium on Biocomputing Habtom W. Ressom, Rency S. Varghese, Lenka Goldman, Christopher A. Loffredo, Mohamed Abdel-Hamid, Zuzana Kyselova, Yehia Mechref, Milos V. Novotny, Radoslav Goldman
2008	J	`jnl`	Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data. BMC Bioinform. Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom
2008	—	`conf`	Probabilistic-Based Mixture Regression Models for Multi-Class Alignment of LC-MS Data. BIOCOMP Getachew K. Befekadu, Mahlet G. Tadesse, Habtom W. Ressom
2008	—	`conf`	Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling. BIOCOMP Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom
2007	J	`jnl`	Neural network-based light attenuation model for monitoring seagrass population in the Indian river lagoon. J. Intell. Inf. Syst. Mohamad T. Musavi, Habtom W. Ressom, Siva Srirangam, Padma Natarajan, Robert W. Virnstein, Lori J. Morris, Wendy Tweedale
2007	J	`jnl`	Peak selection from MALDI-TOF mass spectra using ant colony optimization. Bioinform. Habtom W. Ressom, Rency S. Varghese, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman
2006	—	`conf`	Ant Colony Optimization for Biomarker Identification from MALDI-TOF Mass Spectra. EMBC Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman
2006	C	`conf`	Biomarker Identification and Rule Extraction from Mass Spectral Serum Profiles. CIBCB Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman
2006	B	`conf`	Estimation of Ocean Water Chlorophyll-a Concentration Using Fuzzy C-means Clustering and Artificial Neural Networks. IJCNN Habtom W. Ressom, Kevin Turner, Mohamad T. Musavi
2006	C	`conf`	Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence. CIBCB Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Joseph Wang, Robert Clarke
2006	—	`conf`	Inferring Network Interactions Using Recurrent Neural Networks and Swarm Intelligence. EMBC Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Wang, Robert Clarke
2005	C	`conf`	Analysis of MALDI-TOF Serum Profiles for Biomarker Selection and Sample Classification. CIBCB Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman
2005	J	`jnl`	Analysis of mass spectral serum profiles for biomarker selection. Bioinform. Habtom W. Ressom, Rency S. Varghese, Mohamed Abdel-Hamid, Sohair Abdel-Latif Eissa, Daniel Saha, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Christopher A. Loffredo, Radoslav Goldman
2005	J	`jnl`	Applications of fuzzy logic in genomics. Fuzzy Sets Syst. Habtom W. Ressom, Padma Natarajan, Rency S. Varghese, Mohamad T. Musavi
2005	A	`conf`	Particle swarm optimization for analysis of mass spectral serum profiles. GECCO Habtom W. Ressom, Rency S. Varghese, Daniel Saha, Eduard Orvisky, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman
2004	B	`conf`	A fuzzy confidence value for DNA bases. FUZZ-IEEE Rency Susan Varghese, Mohamad T. Musavi, Habtom W. Ressom
2004	—	`conf`	Estimation of photosynthetic efficiency for monitoring seagrass health using neural networks. Neural Networks and Computational Intelligence Habtom W. Ressom, S. K. Fyfe, Siva Srirangam, Mohamad T. Musavi, Padma Natarajan
2004	J	`jnl`	Inversion of ocean color observations using particle swarm optimization. IEEE Trans. Geosci. Remote. Sens. Wayne H. Slade Jr., Habtom W. Ressom, Mohamad T. Musavi, Richard L. Miller
2004	B	`conf`	Neural network based light attenuation model for monitoring health. IJCNN Habtom W. Ressom, Padma Natarajan, Siva Srirangam, Mohamad T. Musavi, Robert W. Virnstein, Lori J. Morris, Wendy Tweedale
2004	—	`conf`	Neural network-based retrieval of phytoplankton abundance from remotely-sensed ocean radiance. Neural Networks and Computational Intelligence Wayne H. Slade Jr., Richard L. Miller, Habtom W. Ressom, Padma Natarajan
2004	B	`conf`	Ocean color inversion by particle swarm optimization. IEEE Congress on Evolutionary Computation Wayne H. Slade Jr., Habtom W. Ressom, Mohamad T. Musavi, Richard L. Miller
2003	B	`conf`	Adaptive double self-organizing map and its application in gene expression data. IJCNN Habtom W. Ressom, Dali Wang, Padma Natarajan
2003	J	`jnl`	Adaptive double self-organizing maps for clustering gene expression profiles. Neural Networks Habtom W. Ressom, Dali Wang, Padma Natarajan
2003	—	`conf`	Computational Methods for Identifying Number of Clusters in Gene Expression Data. Neural Networks and Computational Intelligence Habtom W. Ressom, Dali Wang, Padma Natarajan
2003	B	`conf`	Ensemble neural network methods for satellite-derived estimation of chlorophyll α. IJCNN Wayne H. Slade Jr., Richard L. Miller, Habtom W. Ressom, Padma Natarajan
2003	B	`conf`	Fuzzy logic-based gene regulatory network. FUZZ-IEEE Habtom W. Ressom, Dali Wang, Rency S. Varghese, Robert Reynolds
2003	B	`conf`	Monitoring seagrass health using neural networks. IJCNN Habtom W. Ressom, S. K. Fyfe, Padma Natarajan, S. Srirangam
2003	B	`conf`	Neural network-based estimation of light attenuation coefficient. IJCNN S. Srirangam, Habtom W. Ressom, Padma Natarajan, Mohamad T. Musavi, R. W. Virnstein, L. J. Morris, W. Tweedale
2002	—	`conf`	Biodiversity and Ecosystems Informatics Workshop for the Indian River Lagoon. DG.O Mohamad T. Musavi, Habtom W. Ressom, Ross Hinkle, Richard L. Miller
2002	B	`conf`	Double self-organizing maps to cluster gene expression data. ESANN Dali Wang, Habtom W. Ressom, Mohamad T. Musavi, Christian Domnisoru
2002	B	`conf`	Improving robustness of fuzzy gene modeling. ESANN Robert Reynolds, Habtom W. Ressom, Mohamad T. Musavi, Christian Domnisoru
2002	J	`jnl`	Learning Premises of Fuzzy Rules for Knowledge Acquisition in Classification Problems. Knowl. Inf. Syst. Ning Xiong, Lothar Litz, Habtom W. Ressom
2000	B	`conf`	On-line estimation of key quality parameters in nonwoven production. SMC Habtom W. Ressom, Holger Voos, Lothar Litz, Peter Schmitt
1999	—	`—`	Dynamic system and virtual sensor modeling using neural networks = Modellierung dynamischer Systeme und virtueller Sensoren mit neuronalen Netzen. Habtom W. Ressom
1999	—	`conf`	Modeling a Refrigeration System Using Recurrent Neural Networks. Fuzzy Days Habtom W. Ressom
1999	B	`conf`	Modeling a compression plant using recurrent neural networks. IJCNN Habtom W. Ressom
1997	C	`conf`	Neurocontrol of Nonlinear Dynamic Systems Subject to Unmeasured Disturbance Inputs. ICANN Habtom W. Ressom, Lothar Litz