Gürkan Bebek

17 papers B 1Misc 5Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2021 Misc conf
Frequent Subgraph Mining of Functional Interaction Patterns Across Multiple Cancers.
PSB
Arda Durmaz, Tim A. D. Henderson, Gürkan Bebek
2017 Misc conf
Frequent Subgraph Mining of Personalized Signaling Pathway Networks Groups Patients with Frequently Dysregulated Disease Pathways and Predicts Prognosis.
PSB
Arda Durmaz, Tim A. D. Henderson, Douglas Brubaker, Gürkan Bebek
2014 Misc conf
Drug Intervention Response Predictions with Paradigm (DIRPP) Identifies Drug Resistant Cancer Cell Lines and Pathway Mechanisms of Resistance.
Pacific Symposium on Biocomputing
Douglas Brubaker, Analisa Difeo, Yanwen Chen, Taylor Pearl, Kaide Zhai, Gürkan Bebek, Mark R. Chance, Jill S. Barnholtz-Sloan
2013 Misc conf
Session introduction.
Pacific Symposium on Biocomputing
Gürkan Bebek, Mehmet Koyutürk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance
2012 J jnl
MAGNET: MicroArray Gene expression and Network Evaluation Toolkit.
Nucleic Acids Res.
George C. Linderman, Mark R. Chance, Gürkan Bebek
2012 J jnl
Network biology methods integrating biological data for translational science.
Briefings Bioinform.
Gürkan Bebek, Mehmet Koyutürk, Nathan D. Price, Mark R. Chance
2011 J jnl
BiC: a web server for calculating bimodality of coexpression between gene and protein networks.
Bioinform.
George C. Linderman, Vishal N. Patel, Mark R. Chance, Gürkan Bebek
2011 J jnl
DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization.
BioData Min.
Sinan Erten, Gürkan Bebek, Rob M. Ewing, Mehmet Koyutürk
2011 B conf
Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks.
RECOMB
Sinan Erten, Gürkan Bebek, Mehmet Koyutürk
2011 J jnl
Microenvironmental genomic alterations reveal signaling networks for head and neck squamous cell carcinoma.
J. Clin. Bioinform.
Gürkan Bebek, Mohammed Orloff, Charis Eng
2011 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Gürkan Bebek, Mehmet Koyutürk, Mark R. Chance, Nathan D. Price
2011 J jnl
Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks.
J. Comput. Biol.
Sinan Erten, Gürkan Bebek, Mehmet Koyutürk
2010 J jnl
PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling.
BMC Bioinform.
Gürkan Bebek, Vishal N. Patel, Mark R. Chance
2009 J jnl
Phylogenetic analysis of modularity in protein interaction networks.
BMC Bioinform.
Sinan Erten, Xin Li, Gürkan Bebek, Jing Li, Mehmet Koyutürk
2007 J jnl
PathFinder: mining signal transduction pathway segments from protein-protein interaction networks.
BMC Bioinform.
Gürkan Bebek, Jiong Yang
2006 J jnl
The degree distribution of the generalized duplication model.
Theor. Comput. Sci.
Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp
2005 — conf
Improved Duplication Models for Proteome Network Evolution.
Systems Biology and Regulatory Genomics
Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp