Géraldine Jean

40 papers A 1B 1C 5Journal 24Unranked 7
YearRankTypeTitle / Venue / Authors
2025 J jnl
Partition Based Algorithms for Rearrangement Distances With Flexible Intergenic Regions.
IEEE Trans. Comput. Biol. Bioinform.
Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Zanoni Dias
2025 J jnl
Sorting genomes by prefix double-cut-and-joins.
Theor. Comput. Sci.
Guillaume Fertin, Géraldine Jean, Anthony Labarre
2025 J jnl
The Exact Subset MultiCover problem.
Theor. Comput. Sci.
Emile Benoist, Guillaume Fertin, Géraldine Jean
2024 J jnl
Assignment of orthologous genes in unbalanced genomes using cycle packing of adjacency graphs.
J. Heuristics
Gabriel Siqueira, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Zanoni Dias
2024 J jnl
The Maximum Zero-Sum Partition problem.
Theor. Comput. Sci.
Guillaume Fertin, Oscar Fontaine, Géraldine Jean, Stéphane Vialette
2023 — conf
Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions.
ISBRA
Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Zanoni Dias
2023 J jnl
Approximation algorithms for sorting by k-cuts on signed permutations.
J. Comb. Optim.
Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2023 J jnl
Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides.
BMC Bioinform.
Grégoire Prunier, Mehdi Cherkaoui, Albane Lysiak, Olivier Langella, Mélisande Blein-Nicolas, Virginie Lollier, Emile Benoist, Géraldine Jean, Guillaume Fertin, Hélène Rogniaux, Dominique Tessier
2023 J jnl
Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information.
J. Comput. Biol.
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2022 C conf
Sorting Genomes by Prefix Double-Cut-and-Joins.
SPIRE
Guillaume Fertin, Géraldine Jean, Anthony Labarre
2022 J jnl
Sorting Genomes by Prefix Double-Cut-and-Joins.
CoRR
Guillaume Fertin, Géraldine Jean, Anthony Labarre
2022 — conf
Sorting by k-Cuts on Signed Permutations.
RECOMB-CG
Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2022 C conf
The Exact Subset MultiCover Problem.
TAMC
Emile Benoist, Guillaume Fertin, Géraldine Jean
2022 A conf
The Maximum Zero-Sum Partition Problem.
ICS
Guillaume Fertin, Oscar Fontaine, Géraldine Jean, Stéphane Vialette
2022 — conf
Transposition Distance Considering Intergenic Regions for Unbalanced Genomes.
ISBRA
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2021 J jnl
Evaluation of open search methods based on theoretical mass spectra comparison.
BMC Bioinform.
Albane Lysiak, Guillaume Fertin, Géraldine Jean, Dominique Tessier
2021 J jnl
Sorting Permutations by Intergenic Operations.
IEEE ACM Trans. Comput. Biol. Bioinform.
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
2021 J jnl
Sorting Signed Permutations by Intergenic Reversals.
IEEE ACM Trans. Comput. Biol. Bioinform.
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Laurent Bulteau, Ulisses Dias, Zanoni Dias
2021 J jnl
Sorting by Multi-Cut Rearrangements.
Algorithms
Laurent Bulteau, Guillaume Fertin, Géraldine Jean, Christian Komusiewicz
2021 B conf
Sorting by Multi-cut Rearrangements.
SOFSEM
Laurent Bulteau, Guillaume Fertin, Géraldine Jean, Christian Komusiewicz
2021 J jnl
The Maximum Colorful Arborescence problem: How (computationally) hard can it be?
Theor. Comput. Sci.
Guillaume Fertin, Julien Fradin, Géraldine Jean
2020 — conf
A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions.
AlCoB
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
2020 J jnl
Sorting by Genome Rearrangements on Both Gene Order and Intergenic Sizes.
J. Comput. Biol.
Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2019 — conf
Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes.
ISBRA
Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2019 J jnl
Super short operations on both gene order and intergenic sizes.
Algorithms Mol. Biol.
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2018 J jnl
Prefix and suffix reversals on strings.
Discret. Appl. Math.
Guillaume Fertin, Loïc Jankowiak, Géraldine Jean
2018 — conf
Super Short Reversals on Both Gene Order and Intergenic Sizes.
BSB
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2017 C conf
Algorithmic Aspects of the Maximum Colorful Arborescence Problem.
TAMC
Guillaume Fertin, Julien Fradin, Géraldine Jean
2017 J jnl
Algorithms for computing the double cut and join distance on both gene order and intergenic sizes.
Algorithms Mol. Biol.
Guillaume Fertin, Géraldine Jean, Eric Tannier
2017 — ch.
The Contig Assembly Problem and Its Algorithmic Solutions.
Algorithms for Next-Generation Sequencing Data
Géraldine Jean, Andreea Radulescu, Irena Rusu
2016 C conf
Genome Rearrangements on Both Gene Order and Intergenic Regions.
WABI
Guillaume Fertin, Géraldine Jean, Eric Tannier
2015 C conf
Prefix and Suffix Reversals on Strings.
SPIRE
Guillaume Fertin, Loïc Jankowiak, Géraldine Jean
2014 — conf
DExTaR: Detection of exact tandem repeats based on the de Bruijn graph.
BIBM
Guillaume Fertin, Géraldine Jean, Andreea Radulescu, Irena Rusu
2014 J jnl
Oqtans: a multifunctional workbench for RNA-seq data analysis.
BMC Bioinform.
Vipin T. Sreedharan, Sebastian J. Schultheiß, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller, Gunnar Rätsch
2014 J jnl
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.
Bioinform.
Vipin T. Sreedharan, Sebastian J. Schultheiß, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller, Gunnar Rätsch
2011 J jnl
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data.
BMC Bioinform.
Sebastian J. Schultheiß, Géraldine Jean, Jonas Behr, Regina Bohnert, Philipp Drewe, Nico Görnitz, André Kahles, Pramod Mudrakarta, Vipin T. Sreedharan, Georg Zeller, Gunnar Rätsch
2011 J jnl
SyDiG: uncovering Synteny in Distant Genomes.
Int. J. Bioinform. Res. Appl.
Géraldine Jean, Macha Nikolski
2009 J jnl
Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures.
J. Comput. Biol.
Géraldine Jean, David James Sherman, Macha Nikolski
2008 — —
In silico methods for genome rearrangement analysis: from identification of common markers to ancestral reconstruction. (Méthodes in silico pour l'étude des réarrangements génomiques : de l'identification de marqueurs communs à la reconstruction ancestrale).
Géraldine Jean
2007 J jnl
Genome rearrangements: a correct algorithm for optimal capping.
Inf. Process. Lett.
Géraldine Jean, Macha Nikolski